Extended Data Fig. 9: Immune context analysis. | Nature Medicine

Extended Data Fig. 9: Immune context analysis.

From: A single-cell map of intratumoral changes during anti-PD1 treatment of patients with breast cancer

Extended Data Fig. 9

Spearman correlation between the number of expanded clonotypes and other key functional marker genes or signature modules pre-treatment. Average expression of genes was calculated in the indicated (sub)cell type pre-treatment per patient. In each heatmap two clusters positively or negatively correlating with expansion were identified, as indicated by the squared boxes.

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