Abstract
Traumatic brain injury (TBI) and cerebrovascular injury are leading causes of disability and mortality worldwide. Systemic infections often accompany these disorders and can worsen outcomes. Recovery after brain injury depends on innate immunity, but the effect of infections on this process is not well understood. Here, we demonstrate that systemically introduced microorganisms and microbial products interfered with meningeal vascular repair after TBI in a type I interferon (IFN-I)-dependent manner, with sequential infections promoting chronic disrepair. Mechanistically, we discovered that MDA5-dependent detection of an arenavirus encountered after TBI disrupted pro-angiogenic myeloid cell programming via induction of IFN-I signaling. Systemic viral infection similarly blocked restorative angiogenesis in the brain parenchyma after intracranial hemorrhage, leading to chronic IFN-I signaling, blood–brain barrier leakage and a failure to restore cognitive–motor function. Our findings reveal a common immunological mechanism by which systemic infections deviate reparative programming after central nervous system injury and offer a new therapeutic target to improve recovery.
This is a preview of subscription content, access via your institution
Relevant articles
Open Access articles citing this article.
-
Systemic innate myeloid responses to acute ischaemic and haemorrhagic stroke
Seminars in Immunopathology Open Access 08 November 2022
Access options
Access Nature and 54 other Nature Portfolio journals
Get Nature+, our best-value online-access subscription
$29.99 per month
cancel any time
Subscribe to this journal
Receive 12 print issues and online access
$189.00 per year
only $15.75 per issue
Rent or buy this article
Get just this article for as long as you need it
$39.95
Prices may be subject to local taxes which are calculated during checkout








Data availability
The data that support the findings of this study are available from the corresponding author upon request. There are no restrictions on data availability. Bulk RNA-seq data are available in the NCBI Gene Expression Omnibus under accession code GSE172102. The mouse genome database used in our RNA-seq analysis was GRCm38 (https://www.ncbi.nlm.nih.gov/assembly/GCF_000001635.20/). Source data are provided with this paper.
References
Capizzi, A., Woo, J. & Verduzco-Gutierrez, M. Traumatic brain injury: an overview of epidemiology, pathophysiology, and medical management. Med. Clin. North Am. 104, 213–238 (2020).
Powers, W. J. et al. Guidelines for the early management of patients with acute ischemic stroke: 2019 update to the 2018 guidelines for the early management of acute ischemic stroke: a guideline for healthcare professionals from the American Heart Association/American Stroke Association. Stroke 50, e344–e418 (2019).
Schumacher, R., Muri, R. M. & Walder, B. Integrated health care management of moderate to severe TBI in older patients-A narrative review. Curr. Neurol. Neurosci. Rep. 17, 92 (2017).
Pendlebury, S. T. & Rothwell, P. M. Prevalence, incidence, and factors associated with pre-stroke and post-stroke dementia: a systematic review and meta-analysis. Lancet Neurol. 8, 1006–1018 (2009).
Nordstrom, A. & Nordstrom, P. Traumatic brain injury and the risk of dementia diagnosis: a nationwide cohort study. PLoS Med. 15, e1002496 (2018).
Vermeij, F. H. et al. Stroke-associated infection is an independent risk factor for poor outcome after acute ischemic stroke: data from the Netherlands Stroke Survey. Cerebrovasc. Dis. 27, 465–471 (2009).
Kourbeti, I. S. et al. Infections in traumatic brain injury patients. Clin. Microbiol. Infect. 18, 359–364 (2012).
Lord, A. S. et al. Infection after intracerebral hemorrhage: risk factors and association with outcomes in the ethnic/racial variations of intracerebral hemorrhage study. Stroke 45, 3535–3542 (2014).
Sharma, R. et al. Infections after a traumatic brain injury: the complex interplay between the immune and neurological systems. Brain Behav. Immun. 79, 63–74 (2019).
Shim, R. & Wong, C. H. Y. Complex interplay of multiple biological systems that contribute to post-stroke infections. Brain Behav. Immun. 70, 10–20 (2018).
Ritzel, R. M. et al. Chronic alterations in systemic immune function after traumatic brain injury. J. Neurotrauma 35, 1419–1436 (2018).
Harrison-Felix, C., Whiteneck, G., Devivo, M. J., Hammond, F. M. & Jha, A. Causes of death following 1 year postinjury among individuals with traumatic brain injury. J. Head Trauma Rehabil. 21, 22–33 (2006).
Kesinger, M. R. et al. Hospital-acquired pneumonia is an independent predictor of poor global outcome in severe traumatic brain injury up to 5 years after discharge. J. Trauma Acute Care Surg. 78, 396–402 (2015).
Andraweera, N. & Seemann, R. Acute rehospitalisation during the first 3 months of in-patient rehabilitation for traumatic brain injury. Aust. Health Rev. 40, 114–117 (2016).
Westendorp, W. F., Nederkoorn, P. J., Vermeij, J. D., Dijkgraaf, M. G. & van de Beek, D. Post-stroke infection: a systematic review and meta-analysis. BMC Neurol. 11, 110 (2011).
Westendorp, W. F. et al. The preventive antibiotics in stroke study (PASS): a pragmatic randomised open-label masked endpoint clinical trial. Lancet 385, 1519–1526 (2015).
Rico, R. M., Ripamonti, R., Burns, A. L., Gamelli, R. L. & DiPietro, L. A. The effect of sepsis on wound healing. J. Surg. Res. 102, 193–197 (2002).
Koskela, M. et al. Epidermal wound healing in severe sepsis and septic shock in humans. Crit. Care 13, R100 (2009).
Jassam, Y. N., Izzy, S., Whalen, M., McGavern, D. B. & El Khoury, J. Neuroimmunology of traumatic brain injury: time for a paradigm shift. Neuron 95, 1246–1265 (2017).
Shlosberg, D., Benifla, M., Kaufer, D. & Friedman, A. Blood–brain barrier breakdown as a therapeutic target in traumatic brain injury. Nat. Rev. Neurol. 6, 393–403 (2010).
Mastorakos, P. & McGavern, D. The anatomy and immunology of vasculature in the central nervous system. Sci. Immunol. https://doi.org/10.1126/sciimmunol.aav0492 (2019).
Russo, M. V. & McGavern, D. B. Inflammatory neuroprotection following traumatic brain injury. Science 353, 783–785 (2016).
Vannella, K. M. & Wynn, T. A. Mechanisms of organ injury and repair by macrophages. Annu. Rev. Physiol. 79, 593–617 (2017).
Shechter, R. et al. Recruitment of beneficial M2 macrophages to injured spinal cord is orchestrated by remote brain choroid plexus. Immunity 38, 555–569 (2013).
Roth, T. L. et al. Transcranial amelioration of inflammation and cell death after brain injury. Nature 505, 223–228 (2014).
Russo, M. V., Latour, L. L. & McGavern, D. B. Distinct myeloid cell subsets promote meningeal remodeling and vascular repair after mild traumatic brain injury. Nat. Immunol. 19, 442–452 (2018).
Mastorakos, P. et al. Temporally distinct myeloid cell responses mediate damage and repair after cerebrovascular injury. Nat. Neurosci. 24, 245–258 (2021).
Iadecola, C. & Anrather, J. The immunology of stroke: from mechanisms to translation. Nat. Med. 17, 796–808 (2011).
Ahmed, N. A. et al. Mechanisms for the diminished neutrophil exudation to secondary inflammatory sites in infected patients with a systemic inflammatory response (sepsis). Crit. Care Med. 27, 2459–2468 (1999).
Santoro, M. M. & Gaudino, G. Cellular and molecular facets of keratinocyte reepithelization during wound healing. Exp. Cell. Res. 304, 274–286 (2005).
Traub, E. Persistence of lymphocytic choriomeningitis virus in immune animals and its relation to immunity. J. Exp. Med. 63, 847–861 (1936).
Volkert, M. & Larsen, J. H. Studies on immunological tolerance to LCM virus. 5. The induction of tolerance to the virus. Acta Pathol. Microbiol. Scand. 63, 161–171 (1965).
Moseman, E. A., Blanchard, A. C., Nayak, D. & McGavern, D. B. T cell engagement of cross-presenting microglia protects the brain from a nasal virus infection. Sci. Immunol. https://doi.org/10.1126/sciimmunol.abb1817 (2020).
Fensterl, V. & Sen, G. C. Interferons and viral infections. Biofactors 35, 14–20 (2009).
Zhou, S. et al. Induction and inhibition of type I interferon responses by distinct components of lymphocytic choriomeningitis virus. J. Virol. 84, 9452–9462 (2010).
Gliem, M. et al. Macrophages prevent hemorrhagic infarct transformation in murine stroke models. Ann. Neurol. 71, 743–752 (2012).
Wattananit, S. et al. Monocyte-derived macrophages contribute to spontaneous long-term functional recovery after stroke in mice. J. Neurosci. 36, 4182–4195 (2016).
Fenn, A. M. et al. Immune activation promotes depression 1 month after diffuse brain injury: a role for primed microglia. Biol. Psychiatry 76, 575–584 (2014).
Muccigrosso, M. M. et al. Cognitive deficits develop 1month after diffuse brain injury and are exaggerated by microglia-associated reactivity to peripheral immune challenge. Brain Behav. Immun. 54, 95–109 (2016).
Doran, S. J. et al. Early or late bacterial lung infection increases mortality after traumatic brain injury in male mice and chronically impairs monocyte innate immune function. Crit. Care Med. 48, e418–e428 (2020).
Davis, F. M. et al. Sepsis induces prolonged epigenetic modifications in bone marrow and peripheral macrophages impairing inflammation and wound healing. Arterioscler. Thromb. Vasc. Biol. 39, 2353–2366 (2019).
Hazeldine, J., Lord, J. M. & Belli, A. Traumatic brain injury and peripheral immune suppression: primer and prospectus. Front. Neurol. 6, 235 (2015).
Angus, D. C. & Opal, S. Immunosuppression and secondary infection in sepsis: part, not all, of the story. JAMA 315, 1457–1459 (2016).
Sadler, A. J. & Williams, B. R. Interferon-inducible antiviral effectors. Nat. Rev. Immunol. 8, 559–568 (2008).
McNab, F., Mayer-Barber, K., Sher, A., Wack, A. & O’Garra, A. Type I interferons in infectious disease. Nat. Rev. Immunol. 15, 87–103 (2015).
Amarante-Mendes, G. P. et al. Pattern-recognition receptors and the host cell death molecular machinery. Front Immunol. 9, 2379 (2018).
Abdullah, A. et al. STING-mediated type-I interferons contribute to the neuroinflammatory process and detrimental effects following traumatic brain injury. J. Neuroinflammation 15, 323 (2018).
Karve, I. P. et al. Ablation of Type-1 IFN signaling in hematopoietic cells confers protection following traumatic brain injury. eNeuro https://doi.org/10.1523/ENEURO.0128-15.2016 (2016).
Barrett, J. P. et al. Interferon-beta plays a detrimental role in experimental traumatic brain injury by enhancing neuroinflammation that drives chronic neurodegeneration. J. Neurosci. 40, 2357–2370 (2020).
Tsirogianni, A. K., Moutsopoulos, N. M. & Moutsopoulos, H. M. Wound healing: immunological aspects. Injury 37, S5–S12 (2006).
Shi, C. & Pamer, E. G. Monocyte recruitment during infection and inflammation. Nat. Rev. Immunol. 11, 762–774 (2011).
Kenyon, A. J. Delayed wound healing in mice associated with viral alteration of macrophages. Am. J. Vet. Res. 44, 652–656 (1983).
Crane, M. J. et al. Pulmonary influenza A virus infection leads to suppression of the innate immune response to dermal injury. PLoS Pathog. 14, e1007212 (2018).
Erdur, H. et al. In-hospital stroke recurrence and stroke after transient ischemic attack: frequency and risk factors. Stroke 46, 1031–1037 (2015).
McColl, B. W., Rothwell, N. J. & Allan, S. M. Systemic inflammatory stimulus potentiates the acute phase and CXC chemokine responses to experimental stroke and exacerbates brain damage via interleukin-1- and neutrophil-dependent mechanisms. J. Neurosci. 27, 4403–4412 (2007).
Xiong, Y., Mahmood, A. & Chopp, M. Angiogenesis, neurogenesis and brain recovery of function following injury. Curr. Opin. Investig. Drugs 11, 298–308 (2010).
Krupinski, J., Kaluza, J., Kumar, P., Kumar, S. & Wang, J. M. Role of angiogenesis in patients with cerebral ischemic stroke. Stroke 25, 1794–1798 (1994).
Cumming, T. B. & Brodtmann, A. Can stroke cause neurodegenerative dementia? Int. J. Stroke 6, 416–424 (2011).
Kraemer, M. et al. Delayed shrinkage of the brain after ischemic stroke: preliminary observations with voxel-guided morphometry. J. Neuroimaging 14, 265–272 (2004).
Nitkunan, A., Lanfranconi, S., Charlton, R. A., Barrick, T. R. & Markus, H. S. Brain atrophy and cerebral small vessel disease: a prospective follow-up study. Stroke 42, 133–138 (2011).
Gorelick, P. B. & Nyenhuis, D. Stroke and cognitive decline. JAMA 314, 29–30 (2015).
Wardlaw, J. M., Sandercock, P. A., Dennis, M. S. & Starr, J. Is breakdown of the blood–brain barrier responsible for lacunar stroke, leukoaraiosis, and dementia? Stroke 34, 806–812 (2003).
Rothenburg, L. S. et al. The relationship between inflammatory markers and post stroke cognitive impairment. J. Geriatr. Psychiatry Neurol. 23, 199–205 (2010).
Kliper, E. et al. Cognitive decline after stroke: relation to inflammatory biomarkers and hippocampal volume. Stroke 44, 1433–1435 (2013).
Becker, K. J., Kindrick, D. L., Lester, M. P., Shea, C. & Ye, Z. C. Sensitization to brain antigens after stroke is augmented by lipopolysaccharide. J. Cereb. Blood Flow Metab. 25, 1634–1644 (2005).
Clausen, B. E., Burkhardt, C., Reith, W., Renkawitz, R. & Forster, I. Conditional gene targeting in macrophages and granulocytes using LysM-cre mice. Transgenic Res. 8, 265–277 (1999).
Prigge, J. R. et al. Type I IFNs act upon hematopoietic progenitors to protect and maintain hematopoiesis during pneumocystis lung infection in mice. J. Immunol. 195, 5347–5357 (2015).
Gitlin, L. et al. Essential role of Mda5 in type I IFN responses to polyriboinosinic:polyribocytidylic acid and encephalomyocarditis picornavirus. Proc. Natl Acad. Sci. USA 103, 8459–8464 (2006).
Jung, S. et al. Analysis of fractalkine receptor CX3CR1 function by targeted deletion and green fluorescent protein reporter gene insertion. Mol. Cell. Biol. 20, 4106–4114 (2000).
Saederup, N. et al. Selective chemokine receptor usage by central nervous system myeloid cells in CCR2-red fluorescent protein knock-in mice. PLoS ONE 5, e13693 (2010).
Muller, U. et al. Functional role of type I and type II interferons in antiviral defense. Science 264, 1918–1921 (1994).
Manglani, M. & McGavern, D. B. Intravital imaging of neuroimmune interactions through a thinned skull. Curr. Protoc. Immunol. 120, 24.2.1–24.2.12 (2018).
Oldstone, M. B., Blount, P., Southern, P. J. & Lampert, P. W. Cytoimmunotherapy for persistent virus infection reveals a unique clearance pattern from the central nervous system. Nature 321, 239–243 (1986).
Welsh, R. M. & Seedhom, M. O. Lymphocytic choriomeningitis virus: propagation, quantitation, and storage. Curr. Protoc. Microbiol. Chapter 15, Unit 15A 11 (2008).
Navarathna, D. H. et al. Enhanced pathogenicity of Candida albicans pre-treated with subinhibitory concentrations of fluconazole in a mouse model of disseminated candidiasis. J. Antimicrob. Chemother. 56, 1156–1159 (2005).
Acknowledgements
This research was supported by the intramural program at the NINDS, NIH. We thank A. Elkahloun and W. Wu in the National Human Genome Research Institute Microarray core for their assistance with the RNA-seq experiment.
Author information
Authors and Affiliations
Contributions
P.M., M.V.R. and T.Z. performed the design, data acquisition and analysis. K.J. conducted computation analyses of RNA-seq data. P.M. and D.B.M. wrote and edited the manuscript. D.B.M. supervised and directed the project and participated in experimental design, data acquisition and analysis.
Corresponding author
Ethics declarations
Competing interests
The authors declare no competing interests.
Additional information
Peer review information Nature Immunology thanks Dennis Simon and the other, anonymous, reviewer(s) for their contribution to the peer review of this work. Editor recognition statement: L. A. Dempsey was the primary editor on this article and managed its editorial process and peer review in collaboration with the rest of the editorial team.
Publisher’s note Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
Extended data
Extended Data Fig. 1 Inhibition of interferon signaling improves meningeal repair after mTBI.
The dot plot depicts the percent of meningeal lesion repair 7 days after mTBI in uninfected mice (Ctrl) as well as mice challenged with LCMV, LPS, or Candida albicans (C. Alb) on day 4 post-injury, with or without αIFNAR antibody treatment. Cumulative data from two independent experiments. Each symbol represents an individual mouse, and asterisks denote statistical significance. Data are represented as mean ± SD. (Ctrl n=6, LCMV n=8, LPS n=15, C. Alb n=15; ****P<0.0001; Two-way ANOVA/ Holm-Sidak test). Representative confocal images from meningeal wholemounts show laminin staining in red, and functional vessels visualized with i.v. fluorescent tomato lectin in green. White dotted lines denote areas of injury and vascular repair. Scale bar, 200 μm. Source data in Source Data Extended Data Fig. 1.
Extended Data Fig. 2 Viral infection after CVI reduces tight junction protein expression.
a. Axial confocal images show i.v. injected tomato lectin (green), claudin-5 (red) and ZO-1 (white) in the superficial neocortex of uninfected (Ctrl) and d4 LCMV-infected B6 mice at day 20 post-CVI. Scale bar, 50 μm. b, c. Dot plots show image-based quantification of claudin-5 (b) and ZO-1 (c) sum intensity per vascular volume. Data represent a compilation of two independent experiments. Each symbol represents an individual mouse and asterisks denote statistical significance. Data are represented as mean ± SD. (Ctrl n=6, LCMV n=8; **P<0.01, ***P<0.0001; Two-tailed Student’s t-test). Source data for b,c in Source Data Extended Data Fig. 2.
Supplementary information
Supplementary Video 1
A representative time lapse captured through the thinned skull of a Cx3cr1GFP/WTCcr2RFP/WT mouse at day 5 after mTBI. The mouse was imaged before (left) and after (right) transcranial IFN-β1 administration. Before IFN-β1 administration, CCR2+ monocytes were observed within the lesion core (denoted with a white dashed line) and perilesional area. One hour of IFN-β1 treatment triggered increased recruitment of CCR2+ cells into the perilesional area and a decrease of these cells within the lesion core. The video is representative of three independent experiments. Quantification of these time lapses is shown in Fig. 5f.
Source data
Source Data Fig. 1
Statistical source data.
Source Data Fig. 2
Statistical source data.
Source Data Fig. 3
Statistical source data.
Source Data Fig. 4
Statistical source data.
Source Data Fig. 5
Statistical source data.
Source Data Fig. 6
Statistical source data.
Source Data Fig. 7
Statistical source data.
Source Data Fig. 8
Statistical source data.
Source Data Extended Data Fig. 1
Statistical source data.
Source Data Extended Data Fig. 2
Statistical source data.
Rights and permissions
About this article
Cite this article
Mastorakos, P., Russo, M.V., Zhou, T. et al. Antimicrobial immunity impedes CNS vascular repair following brain injury. Nat Immunol 22, 1280–1293 (2021). https://doi.org/10.1038/s41590-021-01012-1
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1038/s41590-021-01012-1
This article is cited by
-
Systemic innate myeloid responses to acute ischaemic and haemorrhagic stroke
Seminars in Immunopathology (2022)
-
Interfer(on)-ing with vascular repair after acute brain injury
Nature Immunology (2021)