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Bacterial genomics of plant adaptation

What allows bacteria, both pathogens and mutualists alike, to survive in close association with a eukaryotic host? A new study performed a large-scale comparative genomics analysis to identify novel genetic and genomic traits that are enriched in plant-associated bacterial taxa.

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Fig. 1: Identification of bacterial genes that are enriched in the genomes of plant-associated microbes.


  1. Hacquard, S. et al. Cell Host Microbe 17, 603–616 (2015).

    Article  CAS  Google Scholar 

  2. Pel, M. J. C. & Pieterse, C. M. J. J. Exp. Bot. 64, 1237–1248 (2013).

    Article  CAS  Google Scholar 

  3. Levy, A. et al. Nat. Genet. (2017).

    Article  Google Scholar 

  4. Porter, S. S., Chang, P. L., Conow, C. A., Dunham, J. P. & Friesen, M. L. ISME J. 11, 248–262 (2017).

    Article  CAS  Google Scholar 

  5. Nowell, R. W., Laue, B. E., Sharp, P. M. & Green, S. Mol. Plant Pathol. 17, 1409–1424 (2016).

    Article  CAS  Google Scholar 

  6. Ali, S., Duan, J., Charles, T. C. & Glick, B. R. J. Theor. Biol. 343, 193–198 (2014).

    Article  CAS  Google Scholar 

  7. Loper, J. E. et al. PLoS Genet. 8, e1002784 (2012).

    Article  CAS  Google Scholar 

  8. Ho, B. T., Dong, T. G. & Mekalanos, J. J. Cell Host Microbe 15, 9–21 (2014).

    Article  CAS  Google Scholar 

  9. Xin, X.-F. & He, S. Y. Annu. Rev. Phytopathol. 51, 473–498 (2013).

    Article  CAS  Google Scholar 

  10. Kereszt, A., Mergaert, P., Maróti, G. & Kondorosi, E. Curr. Opin. Microbiol. 14, 76–81 (2011).

    Article  CAS  Google Scholar 

  11. Busby, P. E. et al. PLoS Biol. 15, e2001793 (2017).

    Article  Google Scholar 

  12. Vorholt, J. A., Vogel, C., Carlström, C. I. & Müller, D. B. Cell Host Microbe 22, 142–155 (2017).

    Article  CAS  Google Scholar 

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Correspondence to Cara H. Haney.

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The authors declare no competing financial interests.

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Melnyk, R.A., Haney, C.H. Bacterial genomics of plant adaptation. Nat Genet 50, 2–4 (2018).

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