Protein structure prediction with a language model improves accuracy for orphan and designed proteins.
This is a preview of subscription content, access via your institution
Relevant articles
Open Access articles citing this article.
-
Enhancing missense variant pathogenicity prediction with protein language models using VariPred
Scientific Reports Open Access 07 April 2024
-
Engineering styrene biosynthesis: designing a functional trans-cinnamic acid decarboxylase in Pseudomonas
Microbial Cell Factories Open Access 28 February 2024
Access options
Access Nature and 54 other Nature Portfolio journals
Get Nature+, our best-value online-access subscription
$29.99 / 30 days
cancel any time
Subscribe to this journal
Receive 12 print issues and online access
$209.00 per year
only $17.42 per issue
Buy this article
- Purchase on SpringerLink
- Instant access to full article PDF
Prices may be subject to local taxes which are calculated during checkout
References
Jumper, J. et al. Nature 596, 583–589 (2021).
Baek, M. et al. Science 373, 871–876 (2021).
Chowdhury, R. et al. Nat. Biotechnol. https://doi.org/10.1038/s41587-022-01432-w (2022).
Pearson, W. R. Curr. Protoc. Bioinformatics Ch. 3, Unit 3.1 (2013).
Perdigão, N. et al. Proc. Natl Acad. Sci. USA 112, 15898–15903 (2015).
Alley, E. C., Khimulya, G., Biswas, S., AlQuraishi, M. & Church, G. M. Nat. Methods 16, 1315–1322 (2019).
Riesselman, A. J., Ingraham, J. B. & Marks, D. S. Nat. Methods 15, 816–822 (2018).
Hie, B., Zhong, E. D., Berger, B. & Bryson, B. Science 371, 284–288 (2021).
Anishchenko, I. et al. Nature 600, 547–552 (2021).
Madani, A. et al. Preprint at bioRxiv https://doi.org/10.1101/2021.07.18.452833 (2021).
AlQuraishi, M. AlphaFold @ CASP13: ‘What just happened?’ Some Thoughts on a Mysterious Universe https://moalquraishi.wordpress.com/2018/12/09/alphafold-casp13-what-just-happened/ (2018).
AlQuraishi, M. AlphaFold2 @ CASP14: ‘It feels like one’s child has left home’. Some Thoughts on a Mysterious Universe https://moalquraishi.wordpress.com/2020/12/08/alphafold2-casp14-it-feels-like-ones-child-has-left-home/ (2020).
Author information
Authors and Affiliations
Corresponding author
Ethics declarations
Competing interests
The authors declare no competing interests.
Rights and permissions
About this article
Cite this article
Michaud, J.M., Madani, A. & Fraser, J.S. A language model beats alphafold2 on orphans. Nat Biotechnol 40, 1576–1577 (2022). https://doi.org/10.1038/s41587-022-01466-0
Published:
Issue Date:
DOI: https://doi.org/10.1038/s41587-022-01466-0
This article is cited by
-
Engineering styrene biosynthesis: designing a functional trans-cinnamic acid decarboxylase in Pseudomonas
Microbial Cell Factories (2024)
-
Enhancing missense variant pathogenicity prediction with protein language models using VariPred
Scientific Reports (2024)
-
Machine learning in preclinical drug discovery
Nature Chemical Biology (2024)