Extended Data Fig. 7: Evaluation based on genes per cell and cell clusters. | Nature Biotechnology

Extended Data Fig. 7: Evaluation based on genes per cell and cell clusters.

From: Compressed sensing for highly efficient imaging transcriptomics

Extended Data Fig. 7

a, Distribution of expression diversity (effective number of genes expressed per cell out of 37 total; y axis) in snRNA-Seq, or based on recovered expression levels using autoencoding or segmentation-based decompression (x axis). Mini boxplots depict median (center dots), inner quartiles (upper and lower bounds of box for 25th and 75th percentile), and 1.5x quartile range (minima and maxima of whiskers). b, Correspondence (Pearson’s correlation of mean gene expression; color bar) between cell clusters from snRNA-Seq (rows) and those found from post hoc segmentation of images recovered using the autoencoding algorithm (columns). One marker gene for each cluster is indicated.

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