Correction to: Nature Biotechnology https://doi.org/10.1038/s41587-019-0209-9, published online 24 July 2019.
In the version of this article initially published, some reference citations were incorrect. The three references to Jupyter Notebooks should have cited Kluyver et al. instead of Gonzalez et al. The reference to Qiita should have cited Gonzalez et al. instead of Schloss et al. The reference to mothur should have cited Schloss et al. instead of McMurdie & Holmes. The reference to phyloseq should have cited McMurdie & Holmes instead of Huber et al. The reference to Bioconductor should have cited Huber et al. instead of Franzosa et al. And the reference to the biobakery suite should have cited Franzosa et al. instead of Kluyver et al. The errors have been corrected in the HTML and PDF versions of the article.
Author information
These authors contributed equally: Evan Bolyen, Jai Ram Rideout, Matthew R. Dillon, Nicholas A. Bokulich.
Affiliations
Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA
Evan Bolyen, Jai Ram Rideout, Matthew R. Dillon, Nicholas A. Bokulich, John Chase, Emily K. Cope, Kestrel Gorlick, Christopher R. Keefe, Paul Keim, Jorden Kreps, Ahmad Turan Naimey, Talima Pearson, Arron Shiffer & J. Gregory Caporaso
Metabolic Epidemiology Branch, National Cancer Institute, Rockville, MD, USA
Christian C. Abnet, Erikka Loftfield, Rashmi Sinha, Emily Vogtmann & Yunhu Wan
Department of Computer Science and Engineering, University of Minnesota, Minneapolis, MN, USA
Gabriel A. Al-Ghalith
Biology Department, Woods Hole Oceanographic Institution, Woods Hole, MA, USA
Harriet Alexander
Department of Population Health and Reproduction, University of California, Davis, Davis, CA, USA
Harriet Alexander & C. Titus Brown
Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA
Eric J. Alm & Claire Duvallet
Center for Microbiome Informatics and Therapeutics, Massachusetts Institute of Technology, Cambridge, MA, USA
Eric J. Alm
Novo Nordisk Foundation Center for Basic Metabolic Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark
Manimozhiyan Arumugam, Asker Brejnrod & Lasse Buur Rasmussen
Centre for Integrative Biology, University of Trento, Trento, Italy
Francesco Asnicar & Nicola Segata
State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China
Yang Bai & Yong-Xin Liu
Centre of Excellence for Plant and Microbial Sciences (CEPAMS), Institute of Genetics and Developmental Biology, Chinese Academy of Sciences & John Innes Centre, Beijing, China
Yang Bai & Yong-Xin Liu
University of Chinese Academy of Sciences, Beijing, China
Yang Bai
Department of Microbiology and Immunology, University of California, San Francisco, San Francisco, CA, USA
Jordan E. Bisanz
Division of Gastroenterology and Nutrition, Children’s Hospital of Philadelphia, Philadelphia, PA, USA
Kyle Bittinger
Hepatology, Children’s Hospital of Philadelphia, Philadelphia, PA, USA
Kyle Bittinger
Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, USA
Colin J. Brislawn
Department of Population Health & Pathobiology, North Carolina State University, Raleigh, NC, USA
Benjamin J. Callahan
Bioinformatics Research Center, North Carolina State University, Raleigh, NC, USA
Benjamin J. Callahan
Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USA
Andrés Mauricio Caraballo-Rodríguez, Ricardo Da Silva, Pieter C. Dorrestein, Madeleine Ernst, Julia M. Gauglitz, Alan K. Jarmusch, Kyo Bin Kang, Irina Koester, Alexey V. Melnik, Louis Felix Nothias, Daniel Petras, Anupriya Tripathi & Mingxun Wang
Department of Biological Sciences, Northern Arizona University, Flagstaff, AZ, USA
Emily K. Cope & J. Gregory Caporaso
Institute for Systems Biology, Seattle, WA, USA
Christian Diener & Sean M. Gibbons
Department of Microbiology and Immunology, Dalhousie University, Halifax, Nova Scotia, Canada
Gavin M. Douglas
Irving K. Barber School of Arts and Sciences, University of British Columbia, Kelowna, British Columbia, Canada
Daniel M. Durall
A. Watson Armour III Center for Animal Health and Welfare, Aquarium Microbiome Project, John G. Shedd Aquarium, Chicago, IL, USA
Christian F. Edwardson
Department of Congenital Disorders, Statens Serum Institut, Copenhagen, Denmark
Madeleine Ernst
Department of Biology, University of British Columbia Okanagan, Okanagan, British Columbia, Canada
Mehrbod Estaki
Computational Bioscience Program, University of Colorado Anschutz Medical Campus, Aurora, CO, USA
Jennifer Fouquier & Michael Shaffer
Department of Medicine, Division of Biomedical Informatics and Personalized Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO, USA
Jennifer Fouquier, Catherine Lozupone, Elmar Pruesse & Michael Shaffer
eScience Institute, University of Washington, Seattle, WA, USA
Sean M. Gibbons
Irving K. Barber School of Arts and Sciences, Department of Biology, University of British Columbia, Kelowna, British Columbia, Canada
Deanna L. Gibson
Department of Medicine, University of British Columbia, Kelowna, British Columbia, Canada
Deanna L. Gibson
Department of Pediatrics, University of California San Diego, La Jolla, CA, USA
Antonio Gonzalez, Hannes Holste, Clarisse Marotz, Daniel McDonald, Jamie T. Morton, Jose A. Navas-Molina, Se Jin Song, Anupriya Tripathi, Yoshiki Vázquez-Baeza, Zhenjiang Zech Xu, Qiyun Zhu & Rob Knight
Center for Microbial Ecology, Michigan State University, East Lansing, MI, USA
Jiarong Guo
Department of Computer Science and Engineering, University of Minnesota, Minneapolis, MN, USA
Benjamin Hillmann & Dan Knights
Statistics Department, Stanford University, Palo Alto, CA, USA
Susan Holmes
Department of Computer Science and Engineering, University of California San Diego, La Jolla, CA, USA
Hannes Holste
Department of Biostatistics, Harvard T.H. Chan School of Public Health, Boston, MA, USA
Curtis Huttenhower & Lauren J. McIver
Broad Institute of MIT and Harvard, Cambridge, MA, USA
Curtis Huttenhower & Lauren J. McIver
Research School of Biology, The Australian National University, Canberra, Australian Capital Territory, Australia
Gavin A. Huttley & Benjamin D. Kaehler
Department of Pediatric Oncology, Hematology and Clinical Immunology, Heinrich-Heine University Dusseldorf, Dusseldorf, Germany
Stefan Janssen
Department of Family Medicine and Public Health, University of California San Diego, La Jolla, CA, USA
Lingjing Jiang
School of Science, University of New South Wales, Canberra, Australian Capital Territory, Australia
Benjamin D. Kaehler
College of Pharmacy, Sookmyung Women’s University, Seoul, Republic of Korea
Kyo Bin Kang
Department of Biology, San Diego State University, San Diego, CA, USA
Scott T. Kelley
Biotechnology Institute, University of Minnesota, Saint Paul, MN, USA
Dan Knights
Scripps Institution of Oceanography, University of California San Diego, La Jolla, CA, USA
Irina Koester
Department of Pediatrics, University of California San Diego, La Jolla, California, USA
Tomasz Kosciolek
Department of Pharmacology, Dalhousie University, Halifax, Nova Scotia, Canada
Morgan G. I. Langille
Science Education, Howard Hughes Medical Institute, Ashburn, VA, USA
Joslynn Lee
Department of Microbiome Science, Max Planck Institute for Developmental Biology, Tübingen, Germany
Ruth Ley & William Walters
Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY, USA
Ruth Ley
Department of Computer Science & Engineering, University of California San Diego, La Jolla, CA, USA
Massoud Maher, Jamie T. Morton & Jose A. Navas-Molina
Department of Statistics, University of Washington, Seattle, WA, USA
Bryan D. Martin
Department of Animal Science, Colorado State University, Fort Collins, CO, USA
Jessica L. Metcalf
Irving K. Barber School of Arts and Sciences, Unit 2 (Biology), University of British Columbia, Kelowna, British Columbia, Canada
Sydney C. Morgan
Google LLC, Mountain View, CA, USA
Jose A. Navas-Molina
Center for Microbiome Innovation, University of California San Diego, La Jolla, CA, USA
Stephanie B. Orchanian, Austin D. Swafford & Rob Knight
School of Information Studies, Syracuse University, Syracuse, NY, USA
Samuel L. Peoples
School of STEM, University of Washington Bothell, Bothell, WA, USA
Samuel L. Peoples
Department of Biological Sciences, Webster University, St. Louis, MO, USA
Mary Lai Preuss & Patrick Rosenthal
Agricultural Research Service, Genomics and Bioinformatics Research Unit, United States Department of Agriculture, Gainesville, FL, USA
Adam Rivers & Kyle C. Weber
College of Medicine, Department of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR, USA
Michael S. Robeson II
Department of Civil and Environmental Engineering, Colorado School of Mines, Golden, CO, USA
John R. Spear
Department of Biological Sciences and Northern Gulf Institute, University of Southern Mississippi, Hattiesburg, MS, USA
Luke R. Thompson
Ocean Chemistry and Ecosystems Division, Atlantic Oceanographic and Meteorological Laboratory, National Oceanic and Atmospheric Administration, La Jolla, CA, USA
Luke R. Thompson
Department of Biology, San Diego State University, San Diego, CA, USA
Pedro J. Torres
Department of Environmental and Occupational Health Sciences, University of Washington, Seattle, WA, USA
Pauline Trinh
Division of Biological Sciences, University of California San Diego, San Diego, CA, USA
Anupriya Tripathi & Fernando Vargas
Department of Microbiology and Immunology, University of California San Francisco, San Francisco, CA, USA
Peter J. Turnbaugh
Quantitative and Systems Biology Graduate Program, University of California Merced, Merced, CA, USA
Sabah Ul-Hasan
Bioinformatics Group, Wageningen University, Wageningen, the Netherlands
Justin J. J. van der Hooft
Department of Mathematics, University of Arizona, Tucson, AZ, USA
Max von Hippel
National Laboratory Service, Environment Agency, Starcross, UK
Jonathan Warren
College of Agriculture and Life Sciences, University of Florida, Gainesville, FL, USA
Kyle C. Weber
Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA
Charles H. D. Williamson
Department of Biostatistics, University of Washington, Seattle, WA, USA
Amy D. Willis
School of STEM, Division of Biological Sciences, University of Washington Bothell, Bothell, WA, USA
Jesse R. Zaneveld
Merck & Co. Inc., Kenilworth, NJ, USA
Yilong Zhang
Department of Computer Science and Engineering, University of California San Diego, La Jolla, CA, USA
Rob Knight
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Correspondence to J. Gregory Caporaso.
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Bolyen, E., Rideout, J.R., Dillon, M.R. et al. Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. Nat Biotechnol 37, 1091 (2019). https://doi.org/10.1038/s41587-019-0252-6
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