Supplementary Figure 10: Sequencing results of Lassa virus from the 2018 Lassa fever outbreak in Nigeria. | Nature Biotechnology

Supplementary Figure 10: Sequencing results of Lassa virus from the 2018 Lassa fever outbreak in Nigeria.

From: Capturing sequence diversity in metagenomes with comprehensive and scalable probe design

Supplementary Figure 10

(a) Number of unique LASV reads, among 200,000 reads in total, sequenced following capture with VALL compared to pre-capture in 23 samples from the 2018 Lassa fever outbreak. Points are colored by the state in Nigeria that the sample is from (black is NTC). (b) Percent of LASV genome assembled, after use of VALL, against the fraction of pre-capture reads that are LASV. Points to the left of the horizontal break correspond to samples with no LASV reads pre-capture. As in Fig. 4a, reads were downsampled to 200,000 before assembly. Points are colored as in (a). (c) Percent of LASV genome assembled, after use of VALL. Here, reads were not downsampled before assembly. Bars are ordered as in Fig. 4a and colored by the state in Nigeria that the sample is from.

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