Abstract
A fundamental and unresolved question in regenerative biology is how tissues return to homeostasis after injury. Answering this question is essential for understanding the etiology of chronic disorders such as inflammatory bowel diseases and cancer1. We used the Drosophila midgut2 to investigate this and discovered that during regeneration a subpopulation of cholinergic3 neurons triggers Ca2+ currents among intestinal epithelial cells, the enterocytes, to promote return to homeostasis. We found that down-regulation of the conserved cholinergic enzyme Acetylcholinesterase4 in the gut epithelium enables acetylcholine from specific TNF/Egr5-sensing cholinergic neurons to activate nicotinic receptors in innervated enterocytes. This activation triggers high Ca2+ that spreads in the epithelium through Inx2/Inx7 gap junctions6, promoting enterocyte maturation followed by reduction of proliferation and inflammation. Disrupting this process causes chronic injury consisting of ion imbalance, Yki/Yap activation7, cell death and increase of inflammatory cytokines reminiscent of inflammatory bowel diseases8. Altogether, the conserved cholinergic pathway facilitates epithelial Ca2+ currents that heal the intestinal epithelium. Our findings demonstrate nerve- and bioelectric9-dependent intestinal regeneration and advance our current understanding of how a tissue returns to homeostasis after injury.
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Supplementary information
Supplementary Information
This file contains Supplementary Methods and Full genotypes per Figure and Ext. Data Figure.
Supplementary Figure 1
Sorting Strategy. Flow cytometric sorting of nuclei from fly guts during Homeostasis and Recovery d2. Nuclei were stained with fluorescent DNA dye DRAQ7. Multiple nuclei populations indicate polyploid gut cells. n=70 guts per sample.
Supplementary Tables 1-2
Supplementary Table 1: Top 20 upregulated genes in EC clusters during Homeostasis. Average expression, fold change and p-value of the 20 most significantly upregulated genes in EC clusters during Homeostasis as shown in Ext. Data Fig.1f. Statistics: two-tailed negative binomial exact test, adjusted with Benjamini-Hochberg procedure. Supplementary Table 2: Top 20 upregulated genes in EC clusters during Recovery d2. Average expression, fold change and p-value of the 20 most significantly upregulated genes in EC clusters during Recovery d2 as shown in Ext. Data Fig.1f. Statistics: two-tailed negative binomial exact test, adjusted with Benjamini-Hochberg procedure.
Supplementary Video 1
Cholinergic sensitivity assay during Homeostasis. Supplementary Videos 1-3 depict cholinergic sensitivity assay in ECs of the posterior midgut as described in Fig.1g. Supplementary Video 1: mexTS > GCaMP7c during Homeostasis. Supplementary Video 2: mexTS > GCaMP7c during Recovery d2. Supplementary Video 3: mexTS > GCaMP7c + dCas9VPR, gRNA-Ace during Recovery d2.
Supplementary Video 2
Cholinergic sensitivity assay during Recovery d2.
Supplementary Video 3
Cholinergic sensitivity assay and Ace upregulation during Recovery d2.
Supplementary Video 4
Nicotinic assay during Homeostasis. Supplementary Videos 4-6 depict nicotinic sensitivity assay in ECs of the posterior midgut as described in Fig.2f-g. Supplementary Video 4: mexTS > GCaMP7c during Homeostasis. Supplementary Video 5: mexTS > GCaMP7c during Recovery d2. Supplementary Video 6: mexTS > GCaMP7c + nAChRβ3RNAi during Recovery d2.
Supplementary Video 5
Nicotinic assay during Recovery d2.
Supplementary Video 6
Nicotinic assay and nAChRβ3 reduction during Recovery d2.
Supplementary Video 7
R49E06-axonal projections near ECs. Video of R49E06 innervations at R4 in R49E06TS>syt1HA +mexLexA>6xLexAopGFP fly during Recovery d2 as described in Fig.4b.
Supplementary Video 8
Inducing Ca2+ currents in ECs. This video depicts Ca2+ propagation in ECs during CsChrimson-activation as described in Fig.5a from spECs > CsChrimson / mexLexA > LexAopGCaMP7c flies.
Supplementary Video 9
Nicotinic assay in ECs during Recovery d2. Supplementary Videos 9-10 depict nicotinic sensitivity assay in ECs of the posterior midgut while reducing Inx2 as described in Fig.5g. Supplementary Video 9: mexTS > GCaMP7c during Recovery d2. Supplementary Video 10: mexTS > GCaMP7c + Inx2RNAi during Recovery d2.
Supplementary Video 10
Nicotinic assay and Inx2 reduction during Recovery d2.
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Petsakou, A., Liu, Y., Liu, Y. et al. Cholinergic neurons trigger epithelial Ca2+ currents to heal the gut. Nature (2023). https://doi.org/10.1038/s41586-023-06627-y
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DOI: https://doi.org/10.1038/s41586-023-06627-y
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