Fig. 4: An overview of the mouse ENCODE Project in the current phase. | Nature

Fig. 4: An overview of the mouse ENCODE Project in the current phase.

From: Perspectives on ENCODE

Fig. 4

a, Schematic representation of ENCODE 3 mouse developmental data series. The chromatin graphic is adapted from an image by Darryl Leja (NHGRI), Ian Dunham (EBI), and M.J.P. (NHGRI). The embryo image second from the right in was adapted from ref. 43, an Open Access article distributed under the terms of the Creative Commons Attribution License 2.0. b, Three major axes of the data series: assays, tissues, and developmental stages. The region shown is chr11:98,307,637–98,344,383, mm10. c, A schematic diagram of the transgenic assays used to validate and characterize the function of cCREs in E11.5 and E12.5 mouse embryos. The cCREs were selected on the basis of ChIP–seq data and cloned into a reporter vector that was then introduced into fertilized mouse eggs. The activities of the CRE were validated by tissue-specific expression patterns of the reporter gene. d, Results from recent transgenic assays8,29 to validate about 400 cCREs are summarized in a barchart, with the bars indicating the proportion of candidate CREs in each rank tier that showed reproducible reporter staining in the expected tissue (grey) or any tissue (pink).

Back to article page