A structural transition in physical networks


In many physical networks, including neurons in the brain1,2, three-dimensional integrated circuits3 and underground hyphal networks4, the nodes and links are physical objects that cannot intersect or overlap with each other. To take this into account, non-crossing conditions can be imposed to constrain the geometry of networks, which consequently affects how they form, evolve and function. However, these constraints are not included in the theoretical frameworks that are currently used to characterize real networks5,6,7. Most tools for laying out networks are variants of the force-directed layout algorithm8,9—which assumes dimensionless nodes and links—and are therefore unable to reveal the geometry of densely packed physical networks. Here we develop a modelling framework that accounts for the physical sizes of nodes and links, allowing us to explore how non-crossing conditions affect the geometry of a network. For small link thicknesses, we observe a weakly interacting regime in which link crossings are avoided via local link rearrangements, without altering the overall geometry of the layout compared to the force-directed layout. Once the link thickness exceeds a threshold, a strongly interacting regime emerges in which multiple geometric quantities, such as the total link length and the link curvature, scale with the link thickness. We show that the crossover between the two regimes is driven by the non-crossing condition, which allows us to derive the transition point analytically and show that networks with large numbers of nodes will ultimately exist in the strongly interacting regime. We also find that networks in the weakly interacting regime display a solid-like response to stress, whereas in the strongly interacting regime they behave in a gel-like fashion. Networks in the weakly interacting regime are amenable to 3D printing and so can be used to visualize network geometry, and the strongly interacting regime provides insights into the scaling of the sizes of densely packed mammalian brains.

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Fig. 1: Modelling framework to avoid link and node crossings.
Fig. 2: Crossover in network layouts.
Fig. 3: Stressed networks and 3D printing.

Data availability

All data used in the figures were generated using the simulation code available at https://github.com/nimadehmamy/3D-ELI-FUEL. The data that support the findings of this study are available from the corresponding author on reasonable request.


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We thank A. Grishchenko for 3D visualizations and photography, K. Albrecht, M. Martino and H. Sayama for discussions, and Formlabs and Shapeways for 3D printing. We were supported by grants from Templeton (award number 61066), NSF (award number 1735505), NIH (award number P01HL132825) and AHA (award number 151708).

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Nature thanks G. Bianconi and the other anonymous reviewer(s) for their contribution to the peer review of this work.

Author information




N.D. developed, ran and analysed the simulations, performed the mathematical modelling and derivations, and contributed to writing the manuscript. S.M. contributed to programming and running the simulations, generating figures, editing and 3D printing. A.-L.B. contributed to the conceptual design of the study and was the lead writer of the manuscript.

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Correspondence to Albert-László Barabási.

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Supplementary information

Supplementary Information

This file contains the extended mathematical derivations and supplementary figures. It contains 26 figures, displaying the link crossing problem and our solution to it, followed by description of the phase space, order parameters and finite-size analysis to describe the nature of the transition.

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Dehmamy, N., Milanlouei, S. & Barabási, A. A structural transition in physical networks. Nature 563, 676–680 (2018). https://doi.org/10.1038/s41586-018-0726-6

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  • Physical Network
  • Link Thickness
  • Total Link Length
  • Force-directed Layout (FDL)
  • Linkage Curve

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