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The human connectome in Alzheimer disease — relationship to biomarkers and genetics

An Author Correction to this article was published on 11 August 2021

This article has been updated

Abstract

The pathology of Alzheimer disease (AD) damages structural and functional brain networks, resulting in cognitive impairment. The results of recent connectomics studies have now linked changes in structural and functional network organization in AD to the patterns of amyloid-β and tau accumulation and spread, providing insights into the neurobiological mechanisms of the disease. In addition, the detection of gene-related connectome changes might aid in the early diagnosis of AD and facilitate the development of personalized therapeutic strategies that are effective at earlier stages of the disease spectrum. In this article, we review studies of the associations between connectome changes and amyloid-β and tau pathologies as well as molecular genetics in different subtypes and stages of AD. We also highlight the utility of connectome-derived computational models for replicating empirical findings and for tracking and predicting the progression of biomarker-indicated AD pathophysiology.

Key points

  • Amyloid-β (Aβ) pathology is associated with decreased hub connectivity in the default-mode network (DMN) during the preclinical stage of Alzheimer disease (AD) and the association extends to other brain networks as the disease progresses.

  • Selective hub vulnerability might explain the preferential accumulation of Aβ in the medial hubs of the DMN, and of tau in medial temporal lobe hubs, in preclinical AD.

  • Tau pathology spreads from the medial temporal lobe hubs — along structural connections — to other brain regions, supporting the pathogenic spread hypothesis.

  • Aβ pathology has a common role in driving DMN hypo-connectivity in late-onset AD, autosomal-dominant AD and early-onset AD; however, the association between Aβ pathology and DMN hypoconnectivity is regulated by different genetic variants across AD subtypes.

  • Spatial gene expression profiles might contribute to the relationships between the patterns of Aβ and tau accumulation and patterns of structural and functional connectome changes in AD.

  • Computational modelling studies will be important for understanding the role of the connectome in relation to progression of Aβ, tau and other pathogenic features of AD.

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Fig. 1: Network models.
Fig. 2: Patterns of tau accumulation in AD.
Fig. 3: Early Aβ accumulation in resting-state functional brain networks.
Fig. 4: Association between functional connectivity and covariance in tau-PET change.
Fig. 5: Hypothesized, empirical and predicted tau spreading patterns.
Fig. 6: Gene expression, AD pathology and the human connectomes.

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References

  1. Squire, L. R., Stark, C. E. L. & Clark, R. E. The medial temporal lobe. Annu. Rev. Neurosci. 27, 279–306 (2004).

    Article  CAS  PubMed  Google Scholar 

  2. Dubois, B. et al. Clinical diagnosis of Alzheimer’s disease: recommendations of the International Working Group. Lancet Neurol. 4422, 1–13 (2021).

    Google Scholar 

  3. Sperling, R. A. et al. Amyloid deposition is associated with impaired default network function in older persons without dementia. Neuron 63, 178–188 (2009).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  4. Palmqvist, S. et al. Earliest accumulation of β-amyloid occurs within the default-mode network and concurrently affects brain connectivity. Nat. Commun. 8, 1214 (2017). This article provides compelling evidence that Aβ accumulation preferentially starts in the DMN.

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  5. Buckner, R. L. & DiNicola, L. M. The brain’s default network: updated anatomy, physiology and evolving insights. Nat. Rev. Neurosci. 20, 593–608 (2019).

    Article  CAS  PubMed  Google Scholar 

  6. Braak, H. & Braak, E. Neuropathological stageing of Alzheimer-related changes. Acta Neuropathol. 82, 239–259 (1991).

    Article  CAS  PubMed  Google Scholar 

  7. Small, S. A., Schobel, S. A., Buxton, R. B., Witter, M. P. & Barnes, C. A. A pathophysiological framework of hippocampal dysfunction in ageing and disease. Nat. Rev. Neurosci. 12, 585–601 (2011).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  8. Hampel, H. et al. Blood-based biomarkers for Alzheimer disease: mapping the road to the clinic. Nat. Rev. Neurol. 14, 639–652 (2018).

    Article  PubMed  PubMed Central  Google Scholar 

  9. Jack, C. R. et al. Tracking pathophysiological processes in Alzheimer’s disease: an updated hypothetical model of dynamic biomarkers. Lancet Neurol. 12, 207–216 (2013).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  10. Jack, C. R. & Holtzman, D. M. Biomarker modeling of Alzheimer’s disease. Neuron 80, 1347–1358 (2013).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  11. Jack, C. R., Hampel, H. J., Universities, S., Cu, M. & Petersen, R. C. A/T/N: an unbiased descriptive classification scheme for Alzheimer disease biomarkers. Neurology 87, 539–547 (2016).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  12. Jack, C. R. et al. Prevalence of biologically vs clinically defined Alzheimer spectrum entities using the National Institute on Aging-Alzheimer’s Association Research Framework. JAMA Neurol. 76, 1174–1183 (2019).

    Article  PubMed Central  Google Scholar 

  13. Gaiteri, C., Mostafavi, S., Honey, C. J., De Jager, P. L. & Bennett, D. A. Genetic variants in Alzheimer disease-molecular and brain network approaches. Nat. Rev. Neurol. 12, 413–427 (2016).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  14. Bateman, R. J. et al. Clinical and biomarker changes in dominantly inherited Alzheimer’s disease. N. Engl. J. Med. 367, 795–804 (2012).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  15. Bateman, R. J. et al. Autosomal-dominant Alzheimer’s disease: a review and proposal for the prevention of Alzheimer’s disease. Alzheimers Res. Ther. 3, 1 (2011).

    Article  PubMed  PubMed Central  Google Scholar 

  16. Kunkle, B. W. et al. Genetic meta-analysis of diagnosed Alzheimer’s disease identifies new risk loci and implicates Aβ, tau, immunity and lipid processing. Nat. Genet. 51, 414–430 (2019).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  17. Jansen, I. E. et al. Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer’s disease risk. Nat. Genet. 51, 404–413 (2019).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  18. Sims, R., Hill, M. & Williams, J. The multiplex model of the genetics of Alzheimer’s disease. Nat. Neurosci. 38, 30–34 (2020).

    Google Scholar 

  19. Verghese, P. B., Castellano, J. M. & Holtzman, D. M. Apolipoprotein E in Alzheimer’s disease and other neurological disorders. Lancet Neurol. 10, 241–252 (2011).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  20. Yamazaki, Y., Zhao, N., Caulfield, T. R., Liu, C.-C. & Bu, G. Apolipoprotein E and Alzheimer disease: pathobiology and targeting strategies. Nat. Rev. Neurol. 15, 501–518 (2019).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  21. Masters, C. L. et al. Alzheimer’s disease. Nat. Rev. Dis. Prim. 1, 15056 (2015).

    Article  PubMed  Google Scholar 

  22. Gallagher, M. & Koh, M. T. Episodic memory on the path to Alzheimer’s disease. Curr. Opin. Neurobiol. 21, 929–934 (2011).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  23. Ossenkoppele, R. et al. Amyloid burden and metabolic function in early-onset Alzheimer’s disease: parietal lobe involvement. Brain 135, 2115–2125 (2012).

    Article  PubMed  Google Scholar 

  24. Cho, H. et al. Amyloid deposition in early onset versus late onset Alzheimer’s disease. J. Alzheimers Dis. 35, 813–821 (2013).

    Article  PubMed  CAS  Google Scholar 

  25. Balasa, M. et al. Clinical features and APOE genotype of pathologically proven early-onset Alzheimer disease. Neurology 76, 1720–1725 (2011).

    Article  CAS  PubMed  Google Scholar 

  26. Snowden, J. S. et al. The clinical diagnosis of early-onset dementias: diagnostic accuracy and clinicopathological relationships. Brain 134, 2478–2492 (2011).

    Article  PubMed  Google Scholar 

  27. Gordon, B. A. et al. Tau PET in autosomal dominant Alzheimer’ s disease: relationship with cognition, dementia and other biomarkers. Brain 142, 1063–1076 (2019).

    Article  PubMed  PubMed Central  Google Scholar 

  28. Bullmore, E. & Sporns, O. The economy of brain network organization. Nat. Rev. Neurosci. 13, 336–349 (2012).

    Article  CAS  PubMed  Google Scholar 

  29. Park, H. J. & Friston, K. Structural and functional brain networks: from connections to cognition. Science 342, 1238411 (2013).

    Article  PubMed  CAS  Google Scholar 

  30. Stam, C. J. Modern network science of neurological disorders. Nat. Rev. Neurosci. 15, 683–695 (2014). This review article provides a comprehensive review of the application of graph theory and network science to multiple brain disorders.

    Article  CAS  PubMed  Google Scholar 

  31. Fornito, A., Zalesky, A. & Breakspear, M. The connectomics of brain disorders. Nat. Rev. Neurosci. 16, 159–172 (2015).

    Article  CAS  PubMed  Google Scholar 

  32. Menon, V. Large-scale brain networks and psychopathology: a unifying triple network model. Trends Cogn. Sci. 15, 483–506 (2011).

    Article  PubMed  Google Scholar 

  33. Palop, J. J. & Mucke, L. Network abnormalities and interneuron dysfunction in Alzheimer disease. Nat. Rev. Neurosci. 17, 777–792 (2016).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  34. Delbeuck, X., Van der Linden, M. & Collette, F. Alzheimer’s disease as a disconnection syndrome. Neuropsychol. Rev. 13, 79–92 (2003).

    Article  CAS  PubMed  Google Scholar 

  35. Catani, M. & Ffytche, D. H. The rises and falls of disconnection syndromes. Brain 128, 2224–2239 (2005).

    Article  PubMed  Google Scholar 

  36. Sporns, O. Contributions and challenges for network models in cognitive neuroscience. Nat. Neurosci. 17, 652–660 (2014).

    Article  CAS  PubMed  Google Scholar 

  37. Bassett, D. S. & Sporns, O. Network neuroscience. Nat. Neurosci. 20, 353–364 (2017).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  38. Yu, M. Benchmarking metrics for inferring functional connectivity from multi-channel EEG and MEG: a simulation study. Chaos 30, 123124 (2020).

    Article  PubMed  Google Scholar 

  39. Yu, M., Hillebrand, A., Gouw, A. A. & Stam, C. J. Horizontal visibility graph transfer entropy (HVG-TE): a novel metric to characterize directed connectivity in large-scale brain networks. Neuroimage 156, 249–264 (2017).

    Article  PubMed  Google Scholar 

  40. Hillebrand, A. et al. Direction of information flow in large-scale resting-state networks is frequency-dependent. Proc. Natl Acad. Sci. USA 113, 3867–3872 (2016).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  41. Bullmore, E. & Sporns, O. Complex brain networks: graph theoretical analysis of structural and functional systems. Nat. Rev. Neurosci. 10, 312–312 (2009). This review article provides a thorough review of structural and functional connectome studies.

    Article  CAS  Google Scholar 

  42. Rubinov, M. & Sporns, O. Weight-conserving characterization of complex functional brain networks. Neuroimage 56, 2068–2079 (2011).

    Article  PubMed  Google Scholar 

  43. Rubinov, M. & Sporns, O. Complex network measures of brain connectivity: uses and interpretations. Neuroimage 52, 1059–1069 (2010).

    Article  PubMed  Google Scholar 

  44. Sporns, O., Tononi, G. & Kötter, R. The human connectome: a structural description of the human brain. PLoS Comput. Biol. 1, 0245–0251 (2005).

    Article  CAS  Google Scholar 

  45. Smith, S. M. et al. Functional connectomics from resting-state fMRI. Trends Cogn. Sci. 17, 666–682 (2013).

    Article  PubMed  PubMed Central  Google Scholar 

  46. Bassett, D. S. & Bullmore, E. T. Small-world brain networks revisited. Neuroscientist 23, 499–516 (2016).

    Article  PubMed  PubMed Central  Google Scholar 

  47. van den Heuvel, M. P. & Sporns, O. Network hubs in the human brain. Trends Cogn. Sci. 17, 683–696 (2013).

    Article  PubMed  Google Scholar 

  48. van den Heuvel, M. P. & Sporns, O. Rich-club organization of the human connectome. J. Neurosci. 31, 15775–15786 (2011).

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  49. Sporns, O. & Betzel, R. F. Modular brain networks. Annu. Rev. Psychol. 67, 613–640 (2016).

    Article  PubMed  Google Scholar 

  50. Meunier, D., Lambiotte, R. & Bullmore, E. T. Modular and hierarchically modular organization of brain networks. Front. Neurosci. 4, 200 (2010).

    Article  PubMed  PubMed Central  Google Scholar 

  51. Sporns, O. Network attributes for segregation and integration in the human brain. Curr. Opin. Neurobiol. 23, 162–171 (2013).

    Article  CAS  PubMed  Google Scholar 

  52. Betzel, R. F. & Bassett, D. S. Multi-scale brain networks. Neuroimage 160, 73–83 (2016).

    Article  PubMed  Google Scholar 

  53. Yu, M. et al. Selective impairment of hippocampus and posterior hub areas in Alzheimer’s disease: an MEG-based multiplex network study. Brain 140, 1466–1485 (2017). This paper was the first to describe relationships between MEG-based functional multiplex network topology and Aβ and tau pathologies as well as cognitive decline in AD.

    Article  PubMed  Google Scholar 

  54. Power, J. D., Schlaggar, B. L., Lessov-Schlaggar, C. N. & Petersen, S. E. Evidence for hubs in human functional brain networks. Neuron 79, 798–813 (2013).

    Article  CAS  PubMed  Google Scholar 

  55. Zuo, X. N. et al. Network centrality in the human functional connectome. Cereb. Cortex 22, 1862–1875 (2012).

    Article  PubMed  Google Scholar 

  56. Gong, G. et al. Mapping anatomical connectivity patterns of human cerebral cortex using in vivo diffusion tensor imaging tractography. Cereb. Cortex 19, 524–536 (2009).

    Article  PubMed  Google Scholar 

  57. Hagmann, P. et al. Mapping the structural core of human cerebral cortex. PLoS Biol. 6, 1479–1493 (2008).

    Article  CAS  Google Scholar 

  58. Mišić, B., Goñi, J., Betzel, R. F., Sporns, O. & McIntosh, A. R. A network convergence zone in the hippocampus. PLoS Comput. Biol. 10, e1003982 (2014).

    Article  PubMed  PubMed Central  Google Scholar 

  59. Battaglia, F. P., Benchenane, K., Sirota, A., Pennartz, C. M. A. & Wiener, S. I. The hippocampus: Hub of brain network communication for memory. Trends Cogn. Sci. 15, 310–318 (2011).

    PubMed  Google Scholar 

  60. Swanson, L. W., Hahn, J. D. & Sporns, O. Organizing principles for the cerebral cortex network of commissural and association connections. Proc. Natl Acad. Sci. USA 114, E9692–E9701 (2017).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  61. Tononi, G., Sporns, O. & Edelman, G. M. A measure for brain complexity: relating functional segregation and integration in the nervous system. Proc. Natl Acad. Sci. USA 91, 5033–5037 (1994).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  62. Yeo, B. T. T. et al. The organization of the human cerebral cortex estimated by intrinsic functional connectivity. J. Neurophysiol. 106, 1125–1165 (2011).

    Article  PubMed  Google Scholar 

  63. Schaefer, A. et al. Local-global parcellation of the human cerebral cortex from intrinsic functional connectivity MRI. Cereb. Cortex 28, 3095–3114 (2018).

    Article  PubMed  Google Scholar 

  64. Cole, M. W. et al. Multi-task connectivity reveals flexible hubs for adaptive task control. Nat. Neurosci. 16, 1348–1355 (2013).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  65. Cole, M. W., Bassett, D. S., Power, J. D., Braver, T. S. & Petersen, S. E. Intrinsic and task-evoked network architectures of the human brain. Neuron 83, 238–251 (2014).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  66. Smith, S. et al. Structural variability in the human brain reflects fine-grained functional architecture at the population level. J. Neurosci. 39, 6136–6149 (2019).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  67. Fox, M. D. & Raichle, M. E. Spontaneous fluctuations in brain activity observed with functional magnetic resonance imaging. Nat. Rev. Neurosci. 8, 700–711 (2007).

    Article  CAS  PubMed  Google Scholar 

  68. Fulcher, B. D. & Fornito, A. A transcriptional signature of hub connectivity in the mouse connectome. Proc. Natl Acad. Sci. USA 113, 1435–1440 (2016).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  69. Arnatkevicˇiu¯te∙, A., Fulcher, B. D. & Fornito, A. Uncovering the transcriptional correlates of hub connectivity in neural networks. Front. Neural Circuits 13, 47 (2019).

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  70. Thompson, P. M., Ge, T., Glahn, D. C., Jahanshad, N. & Nichols, T. E. Genetics of the connectome. Neuroimage 80, 475–488 (2013).

    Article  CAS  PubMed  Google Scholar 

  71. Fornito, A., Arnatkevicˇiu¯te∙, A. & Fulcher, B. D. Bridging the gap between connectome and transcriptome. Trends Cogn. Sci. 23, 34–50 (2019). This article reviews the relationships between brain connectome topology and brain-wide gene expression.

    Article  PubMed  Google Scholar 

  72. De Haan, W. et al. Disrupted modular brain dynamics reflect cognitive dysfunction in Alzheimer’s disease. Neuroimage 59, 3085–3093 (2012).

    Article  PubMed  Google Scholar 

  73. Yu, M. et al. Hierarchical clustering in minimum spanning trees. Chaos 25, 023107 (2015).

    Article  PubMed  Google Scholar 

  74. Yu, M. et al. Different functional connectivity and network topology in behavioral variant of frontotemporal dementia and Alzheimer’s disease: an EEG study. Neurobiol. Aging 42, 150–162 (2016).

    Article  PubMed  Google Scholar 

  75. Buckner, R. L. et al. Cortical hubs revealed by intrinsic functional connectivity: mapping, assessment of stability, and relation to Alzheimer’s disease. J. Neurosci. 29, 1860–1873 (2009).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  76. Crossley, N. A. et al. The hubs of the human connectome are generally implicated in the anatomy of brain disorders. Brain 137, 2382–2395 (2014).

    Article  PubMed  PubMed Central  Google Scholar 

  77. Filippi, M. et al. Changes in functional and structural brain connectome along the Alzheimer’s disease continuum. Mol. Psychiatry 25, 230–239 (2020).

    Article  PubMed  Google Scholar 

  78. Schöll, M. et al. PET imaging of tau deposition in the aging human brain. Neuron 89, 971–982 (2016).

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  79. Bassett, D. S., Zurn, P. & Gold, J. I. On the nature and use of models in network neuroscience. Nat. Rev. Neurosci. 19, 566–578 (2018).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  80. Pievani, M., Filippini, N., Van Den Heuvel, M. P., Cappa, S. F. & Frisoni, G. B. Brain connectivity in neurodegenerative diseases - From phenotype to proteinopathy. Nat. Rev. Neurol. 10, 620–633 (2014).

    Article  PubMed  Google Scholar 

  81. Tijms, B. M. et al. Alzheimer’s disease: connecting findings from graph theoretical studies of brain networks. Neurobiol. Aging 34, 2023–2036 (2013).

    Article  PubMed  Google Scholar 

  82. Alexander-Bloch, A., Giedd, J. N. & Bullmore, E. Imaging structural co-variance between human brain regions. Nat. Rev. Neurosci. 14, 322–336 (2013).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  83. Tijms, B. M., Seris, P., Willshaw, D. J. & Lawrie, S. M. Similarity-based extraction of individual networks from gray matter MRI scans. Cereb. Cortex 22, 1530–1541 (2012).

    Article  PubMed  Google Scholar 

  84. Tijms, B. M. et al. Single-subject grey matter graphs in Alzheimer’s disease. PLoS One 8, e58921 (2013).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  85. Tijms, B. M. et al. Gray matter network disruptions and amyloid beta in cognitively normal adults. Neurobiol. Aging 37, 154–160 (2016).

    Article  CAS  PubMed  Google Scholar 

  86. ten Kate, M. et al. Gray matter network disruptions and regional amyloid beta in cognitively normal adults. Front. Aging Neurosci. 10, 67 (2018).

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  87. Tijms, B. M. et al. Gray matter networks and clinical progression in subjects with predementia Alzheimer’s disease. Neurobiol. Aging 61, 75–81 (2018).

    Article  PubMed  Google Scholar 

  88. Dicks, E., van der Flier, W. M., Scheltens, P., Barkhof, F. & Tijms, B. M. Single-subject grey matter networks predict future cortical atrophy in preclinical Alzheimer’s disease. Neurobiol. Aging 94, 71–80 (2020).

    Article  PubMed  Google Scholar 

  89. Voevodskaya, O. et al. Altered structural network organization in cognitively normal individuals with amyloid pathology. Neurobiol. Aging 64, 15–24 (2018).

    Article  CAS  PubMed  Google Scholar 

  90. Prescott, J. W. et al. The Alzheimer structural connectome: changes in cortical network topology with increased amyloid plaque burden. Radiology 273, 175–184 (2014).

    Article  PubMed  Google Scholar 

  91. Jonkman, L. et al. Relationship between β-amyloid and structural network topology in decedents without dementia. Neurology 95, e532–e544 (2020). This article was the first to describe relationships between Aβ accumulation and structural brain network topology in decedents without dementia.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  92. Mito, R. et al. Fibre-specific white matter reductions in Alzheimer’s disease and mild cognitive impairment. Brain 141, 888–902 (2018).

    Article  PubMed  Google Scholar 

  93. Kantarci, K. et al. White matter integrity determined with diffusion tensor imaging in older adults without dementia: Influence of amyloid load and neurodegeneration. JAMA Neurol. 71, 1547–1554 (2014).

    Article  PubMed  PubMed Central  Google Scholar 

  94. Rabin, J. S. et al. Global white matter diffusion characteristics predict longitudinal cognitive change independently of amyloid status in clinically normal older adults. Cereb. Cortex 29, 1251–1262 (2019).

    Article  PubMed  Google Scholar 

  95. Parra, M. A. et al. Memory binding and white matter integrity in familial Alzheimer’s disease. Brain 138, 1355–1369 (2015).

    Article  PubMed  PubMed Central  Google Scholar 

  96. Kantarci, K. et al. White-matter integrity on DTI and the pathologic staging of Alzheimer’s disease. Neurobiol. Aging 56, 172–179 (2017).

    Article  PubMed  PubMed Central  Google Scholar 

  97. Iturria-Medina, Y. & Evans, A. C. On the central role of brain connectivity in neurodegenerative disease progression. Front. Aging Neurosci. 7, 90 (2015).

    Article  PubMed  PubMed Central  Google Scholar 

  98. Kuang, W., Cieslak, M., Greene, C., Grafton, S. T. & Carlson, J. M. Sensitivity analysis of human brain structural network construction Kuang. Netw. Neurosci. 1, 446–467 (2017).

    Article  Google Scholar 

  99. Powell, F., Tosun, D., Sadeghi, R., Weiner, M. & Raj, A. Preserved structural network organization mediates pathology spread in Alzheimer’s disease spectrum despite loss of white matter tract integrity. J. Alzheimers Dis. 65, 747–764 (2018).

    Article  PubMed  PubMed Central  Google Scholar 

  100. Maier-Hein, K. H. et al. The challenge of mapping the human connectome based on diffusion tractography. Nat. Commun. 8, 1349 (2017).

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  101. Thomas, C. et al. Anatomical accuracy of brain connections derived from diffusion MRI tractography is inherently limited. Proc. Natl Acad. Sci. USA 111, 16574–16579 (2014).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  102. Schilling, K. G. et al. Limits to anatomical accuracy of diffusion tractography using modern approaches. Neuroimage 185, 1–11 (2019).

    Article  PubMed  Google Scholar 

  103. Millar, P. R. et al. Evaluating resting-state BOLD variability in relation to biomarkers of preclinical Alzheimer disease. Neurobiol. Aging 96, 233–245 (2020).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  104. Hedden, T. et al. Disruption of functional connectivity in clinically normal older adults harboring amyloid burden. J. Neurosci. 29, 12686–12694 (2009).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  105. Johnson, K. A., Sperling, R. A. & Sepulcre, J. Functional connectivity in Alzheimer’s disease: measurement and meaning. Biol. Psychiatry 74, 318–319 (2013).

    Article  PubMed  Google Scholar 

  106. Koch, K. et al. Disrupted intrinsic networks link amyloid-β pathology and impaired cognition in prodromal Alzheimer’s disease. Cereb. Cortex 25, 4678–4688 (2015).

    Article  PubMed  Google Scholar 

  107. Drzezga, A. et al. Neuronal dysfunction and disconnection of cortical hubs in non-demented subjects with elevated amyloid burden. Brain 134, 1635–1646 (2011).

    Article  PubMed  PubMed Central  Google Scholar 

  108. Lehmann, M. et al. Intrinsic connectivity networks in healthy subjects explain clinical variability in Alzheimer’s disease. Proc. Natl Acad. Sci. USA 110, 11606–11611 (2013).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  109. Jones, D. T. et al. Cascading network failure across the Alzheimer’s disease spectrum. Brain 139, 547–562 (2016).

    Article  PubMed  Google Scholar 

  110. Schultz, A. P. et al. Longitudinal degradation of the default/salience network axis in symptomatic individuals with elevated amyloid burden. NeuroImage Clin. 26, 102052 (2020).

    Article  PubMed  Google Scholar 

  111. Berron, D. et al. Medial temporal lobe connectivity and its associations with cognition in early Alzheimer’s disease. Brain 143, 1233–1248 (2020).

    Article  PubMed  PubMed Central  Google Scholar 

  112. Ossenkoppele, R. & Hansson, O. Towards clinical application of tau PET tracers for diagnosing dementia due to Alzheimer’s disease. Alzheimers Dement. https://doi.org/10.1002/alz.12356 (2021).

    Article  PubMed  Google Scholar 

  113. Jacobs, H. I. L. et al. Structural tract alterations predict downstream tau accumulation in amyloid-positive older individuals. Nat. Neurosci. 21, 424–431 (2018). This article provides evidence that tau spreads through structural connections facilitated by Aβ pathology.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  114. Shigemoto, Y. et al. Association of deposition of tau and amyloid-β proteins with structural connectivity changes in cognitively normal older adults and Alzheimer’s disease spectrum patients. Brain Behav. 8, e01145 (2018).

    Article  PubMed  PubMed Central  Google Scholar 

  115. Harrison, T. M. et al. Longitudinal tau accumulation and atrophy in aging and alzheimer disease. Ann. Neurol. 85, 229–240 (2019).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  116. Joie, R. L. et al. Prospective longitudinal atrophy in Alzheimer’ s disease correlates with the intensity and topography of baseline tau-PET. Sci. Transl. Med. 12, eaau5732 (2020).

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  117. Reimand, J., Collij, L., Scheltens, P., Femke Bouwman & Ossenkoppele, R. Amyloid-β CSF/PET discordance vs tau load 5 years later: it takes two to tangle. Neurology 95, e2648–e2657 (2020).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  118. Mattsson, N. et al. Predicting diagnosis and cognition with 18 F-AV-1451 tau PET and structural MRI in Alzheimer’s disease. Alzheimers Dement. 15, 570–580 (2019).

    Article  PubMed  Google Scholar 

  119. Jacobs, H. I. L. et al. The presubiculum links incipient amyloid and tau pathology to memory function in older persons. Neurology 94, e1916–e1928 (2020).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  120. Iaccarino, L. et al. Spatial relationships between molecular pathology and neurodegeneration in the Alzheimer’s disease continuum. Cereb. Cortex 31, 1–14 (2020).

    Article  PubMed Central  Google Scholar 

  121. Wang, L. et al. Cerebrospinal fluid Aβ42, phosphorylated tau181, and resting-state functional connectivity. JAMA Neurol. 70, 1242–1248 (2013).

    PubMed  PubMed Central  Google Scholar 

  122. Canuet, L. et al. Network disruption and cerebrospinal fluid amyloid-beta and phospho-tau levels in mild cognitive impairment. J. Neurosci. 35, 10325–10330 (2015).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  123. Schultz, A. P. et al. Phases of hyperconnectivity and hypoconnectivity in the default mode and salience networks track with amyloid and tau in clinically normal individuals. J. Neurosci. 37, 4323–4331 (2017).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  124. Maass, A. et al. Alzheimer’s pathology targets distinct memory networks in the ageing brain. Brain 142, 2492–2509 (2019). This study reports evidence that tau and Aβ pathologies target distinctive functional brain networks in the ageing brain.

    Article  PubMed  PubMed Central  Google Scholar 

  125. Harrison, T. M. et al. Tau deposition is associated with functional isolation of the hippocampus in aging. Nat. Commun. 10, 4900 (2019).

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  126. Gordon, B. A. et al. Spatial patterns of neuroimaging biomarker change in individuals from families with autosomal dominant Alzheimer’s disease: a longitudinal study. Lancet Neurol. 17, 211–212 (2018).

    Article  Google Scholar 

  127. Benzinger, T. L. S. et al. Regional variability of imaging biomarkers in autosomal dominant Alzheimer’s disease. Proc. Natl Acad. Sci. USA 110, E4502–E4509 (2013).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  128. Hansson, O. et al. Tau pathology distribution in Alzheimer’s disease corresponds differentially to cognition-relevant functional brain networks. Front. Neurosci. 11, 167 (2017).

    Article  PubMed  PubMed Central  Google Scholar 

  129. Franzmeier, N. et al. Functional brain architecture is associated with the rate of tau accumulation in Alzheimer’s disease. Nat. Commun. 11, 347 (2020). This study reports the spatial relationships between that tau accumulation and functional brain networks in AD.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  130. Franzmeier, N. et al. Functional connectivity associated with tau levels in ageing, Alzheimer’s, and small vessel disease. Brain 142, 1093–1107 (2019).

    Article  PubMed  PubMed Central  Google Scholar 

  131. Ossenkoppele, R. et al. Tau covariance patterns in Alzheimer’s disease patients match intrinsic connectivity networks in the healthy brain. NeuroImage Clin. 23, 101848 (2019).

    Article  PubMed  PubMed Central  Google Scholar 

  132. Cope, T. E. et al. Tau burden and the functional connectome in Alzheimer’s disease and progressive supranuclear palsy. Brain 141, 550–567 (2018). This study was the first to assess the relationship between tau burden and fMRI-based functional network topology characterized by graph-theoretic measures.

    Article  PubMed  PubMed Central  Google Scholar 

  133. Schöll, M. et al. Biomarkers for tau pathology. Mol. Cell. Neurosci. 97, 18–33 (2019).

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  134. Jagust, W. Imaging the evolution and pathophysiology of Alzheimer disease. Nat. Rev. Neurosci. 19, 687–700 (2018). This article provides a comprehensive review of neuroimaging studies in different types and stages of AD.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  135. Pereira, J. B. et al. Amyloid and tau accumulate across distinct spatial networks and are differentially associated with brain connectivity. eLife 8, e50830 (2019).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  136. Sepulcre, J. et al. Tau and amyloid β proteins distinctively associate to functional network changes in the aging brain. Alzheimers Dement. 13, 1261–1269 (2017).

    Article  PubMed  PubMed Central  Google Scholar 

  137. Huijbers, W. et al. Tau accumulation in clinically normal older adults is associated with increases in hippocampal fMRI activity. J. Neurosci. 39, 548–556 (2019).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  138. Adams, J. N., Maass, A., Harrison, T. M., Baker, S. L. & Jagust, W. J. Cortical tau deposition follows patterns of entorhinal functional connectivity in aging. eLife 8, e49132 (2019).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  139. Therriault, J. et al. Association of apolipoprotein e ε4 with medial temporal tau Independent of amyloid-β. JAMA Neurol. 77, 470–479 (2020).

    Article  PubMed  Google Scholar 

  140. Therriault, J. et al. APOEε4 potentiates the relationship between amyloid-β and tau pathologies. Mol. Psychiatry https://doi.org/10.1038/s41380-020-0688-6 (2020).

    Article  PubMed  PubMed Central  Google Scholar 

  141. Wolk, D. A. & Dickerson, B. C. Apolipoprotein E (APOE) genotype has dissociable effects on memory and attentional-executive network function in Alzheimer’s disease. Proc. Natl Acad. Sci. USA 107, 10256–10261 (2010).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  142. Chiesa, P. A., Cavedo, E., Lista, S., Thompson, P. M. & Hampel, H. Revolution of resting-state functional neuroimaging genetics in Alzheimer’s disease. Trends Neurosci. 40, 469–480 (2017).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  143. Sheline, Y. I. et al. APOE4 allele disrupts resting state fMRI connectivity in the absence of amyloid plaques or decreased CSF A 42. J. Neurosci. 30, 17035–17040 (2010).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  144. Chiesa, P. A. et al. Differential default mode network trajectories in asymptomatic individuals at risk for Alzheimer’s disease. Alzheimers Dement. 15, 940–950 (2019). This article provides evidence that APOE ε4 leads to changes in DMN, independent of Aβ pathology.

    Article  PubMed  Google Scholar 

  145. Wang, J. et al. Apolipoprotein E ε4 modulates functional brain connectome in Alzheimer’s disease. Hum. Brain Mapp. 36, 1828–1846 (2015).

    Article  PubMed  PubMed Central  Google Scholar 

  146. Contreras, J. A. et al. Functional connectivity among brain regions affected in Alzheimer’s disease is associated with CSF TNF-α in APOE4 carriers. Neurobiol. Aging 86, 112–122 (2020).

    Article  CAS  PubMed  Google Scholar 

  147. Machulda, M. M. et al. Effect of APOE ε4 status on intrinsic network connectivity in cognitively normal elderly subjects. Arch. Neurol. 68, 1131–1136 (2011).

    Article  PubMed  PubMed Central  Google Scholar 

  148. Butt, O. H. et al. Network dysfunction in cognitively normal APOE ε4 carriers is related to subclinical tau. Alzheimers Dement. https://doi.org/10.1002/alz.12375 (2021).

    Article  PubMed  PubMed Central  Google Scholar 

  149. Meije Wink, A. et al. Functional brain network centrality is related to APOE genotype in cognitively normal elderly. Brain Behav. 8, e01080 (2018).

    Article  Google Scholar 

  150. Wang, L. et al. Alzheimer disease family history impacts resting state functional connectivity. Ann. Neurol. 72, 571–577 (2012).

    Article  PubMed  PubMed Central  Google Scholar 

  151. Verfaillie, S. C. J. et al. Subjective cognitive decline is associated with altered default mode network connectivity in individuals with a family history of Alzheimer’s disease. Biol. Psychiatry Cogn. Neurosci. Neuroimaging 3, 463–472 (2018).

    PubMed  Google Scholar 

  152. Vogel, J. W. et al. Brain properties predict proximity to symptom onset in sporadic Alzheimer’s disease. Brain 141, 1871–1883 (2018).

    Article  PubMed  PubMed Central  Google Scholar 

  153. Brown, J. A. et al. Brain network local interconnectivity loss in aging APOE-4 allele carriers. Proc. Natl Acad. Sci. USA 108, 20760–20765 (2011).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  154. Shu, N. et al. Effects of APOE promoter polymorphism on the topological organization of brain structural connectome in nondemented elderly. Hum. Brain Mapp. 36, 4847–4858 (2015).

    Article  PubMed  PubMed Central  Google Scholar 

  155. Chang, P. et al. The effects of an APOE promoter polymorphism on human white matter connectivity during non-demented aging. J. Alzheimers Dis. 55, 77–87 (2016).

    Article  CAS  Google Scholar 

  156. Ma, C. et al. Disrupted brain structural connectivity: pathological interactions between genetic APOE ε4 status and developed MCI condition. Mol. Neurobiol. 54, 6999–7007 (2017).

    Article  CAS  PubMed  Google Scholar 

  157. Chen, Y. et al. Disrupted functional and structural networks in cognitively normal elderly subjects with the APOE ε4 allele. Neuropsychopharmacology 40, 1181–1191 (2015).

    Article  CAS  PubMed  Google Scholar 

  158. Korthauer, L. E., Zhan, L., Ajilore, O., Leow, A. & Driscoll, I. Disrupted topology of the resting state structural connectome in middle-aged APOE ε4 carriers. Neuroimage 178, 295–305 (2018). This study shows that APOE ε4-related structural connectome changes occur even in middle-aged individuals.

    Article  CAS  PubMed  Google Scholar 

  159. Elsheikh, S. S. M., Chimusa, E. R., Mulder, N. J. & Crimi, A. Genome-wide association study of brain connectivity changes for Alzheimer’s disease. Sci. Rep. 10, 1433 (2020).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  160. Jahanshad, N. et al. Genome-wide scan of healthy human connectome discovers SPON1 gene variant influencing dementia severity. Proc. Natl Acad. Sci. USA 110, 4768–4773 (2013).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  161. Feinstein, Y. et al. F-spondin and mindin: two structurally and functionally related genes expressed in the hippocampus that promote outgrowth of embryonic hippocampal neurons. Development 126, 3637–3648 (1999).

    Article  CAS  PubMed  Google Scholar 

  162. Hoe, H. S. & William Rebeck, G. Functional interactions of APP with the apoE receptor family. J. Neurochem. 106, 2263–2271 (2008).

    Article  CAS  PubMed  Google Scholar 

  163. Hafez, D. M. et al. F-spondin gene transfer improves memory performance and reduces amyloid-β levels in mice. Neuroscience 223, 465–472 (2012).

    Article  CAS  PubMed  Google Scholar 

  164. Lee, S. et al. White matter hyperintensities are a core feature of Alzheimer’s disease: Evidence from the dominantly inherited Alzheimer network. Ann. Neurol. 79, 929–939 (2016).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  165. Araque Caballero, M. Á. et al. White matter diffusion alterations precede symptom onset in autosomal dominant Alzheimer’s disease. Brain 141, 3065–3080 (2018).

    Article  PubMed  PubMed Central  Google Scholar 

  166. Vermunt, L. et al. Single-subject grey matter network trajectories over the disease course of autosomal dominant Alzheimer disease. Brain Commun. 2, fcaa102 (2020). This article reports evidence that single-subject structural grey matter covariance network metrics can track the progression of autosomal-dominant AD.

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  167. Chhatwal, J. P. et al. Impaired default network functional connectivity in autosomal dominant Alzheimer disease. Neurology 81, 736–744 (2013).

    Article  PubMed  PubMed Central  Google Scholar 

  168. Thomas, J. B. et al. Functional connectivity in autosomal dominant and late-onset Alzheimer disease. JAMA Neurol. 71, 1111–1122 (2014).

    Article  PubMed  PubMed Central  Google Scholar 

  169. Chhatwal, J. P. et al. Preferential degradation of cognitive networks differentiates Alzheimer’s disease from ageing. Brain 141, 1486–1500 (2018).

    Article  PubMed  PubMed Central  Google Scholar 

  170. Franzmeier, N. et al. Left frontal hub connectivity delays cognitive impairment in autosomal-dominant and sporadic Alzheimer’s disease. Brain 141, 1186–1200 (2018).

    Article  PubMed  PubMed Central  Google Scholar 

  171. Mendez, M. F. Early-onset Alzheimer disease and its variants. Contin. Lifelong Learn. Neurol. 25, 34–51 (2019).

    Article  Google Scholar 

  172. Mendez, M. F. Early-onset Alzheimer disease. Neurol. Clin. 35, 263–281 (2017).

    Article  PubMed  PubMed Central  Google Scholar 

  173. Filippi, M. et al. Brain network connectivity differs in early-onset neurodegenerative dementia. Neurology 89, 1764–1772 (2017). A functional brain network study shows distinctive network connectivity patterns in early-onset AD and frontotemporal dementia.

    Article  PubMed  PubMed Central  Google Scholar 

  174. Lee, E.-S. et al. Default mode network functional connectivity in early and late mild cognitive impairment. Alzheimer Dis. Assoc. Disord. 30, 289–296 (2016).

    Article  PubMed  Google Scholar 

  175. Buckner, R. L., Andrews-Hanna, J. R. & Schacter, D. L. The brain’s default network: Anatomy, function, and relevance to disease. Ann. N. Y. Acad. Sci. 1124, 1–38 (2008).

    Article  PubMed  Google Scholar 

  176. Li, K. C. et al. Distinct patterns of interhemispheric connectivity in patients with early- and late-onset Alzheimer’s disease. Front. Aging Neurosci. 10, 261 (2018).

    Article  PubMed  PubMed Central  Google Scholar 

  177. Daianu, M. et al. An advanced white matter tract analysis in frontotemporal dementia and early-onset Alzheimer’s disease. Brain Imaging Behav. 10, 1038–1053 (2016).

    Article  PubMed  Google Scholar 

  178. Daianu, M. et al. Disrupted rich club network in behavioral variant frontotemporal dementia and early-onset Alzheimer’s disease. Hum. Brain Mapp. 37, 868–883 (2016).

    Article  PubMed  Google Scholar 

  179. Goedert, M. Alzheimer’s and Parkinson’s diseases: the prion concept in relation to assembled Aβ, tau, and α-synuclein. Science 349, 61–69 (2015).

    Article  CAS  Google Scholar 

  180. Frost, B. & Diamond, M. I. Prion-like mechanisms in neurodegenerative diseases. Nat. Rev. Neurosci. 11, 155–159 (2010).

    Article  CAS  PubMed  Google Scholar 

  181. Fornari, S., Schäfer, A., Jucker, M., Goriely, A. & Kuhl, E. Prion-like spreading of Alzheimer’s disease within the brain’s connectome. J. R. Soc. Interface 16, 20190356 (2019).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  182. Peng, C., Trojanowski, J. Q. & Lee, V. M. Y. Protein transmission in neurodegenerative disease. Nat. Rev. Neurol. 16, 199–212 (2020).

    Article  CAS  PubMed  Google Scholar 

  183. He, Z. et al. Amyloid-β plaques enhance Alzheimer’s brain tau-seeded pathologies by facilitating neuritic plaque tau aggregation. Nat. Med. 24, 29–38 (2018).

    Article  CAS  PubMed  Google Scholar 

  184. Mezias, C., LoCastro, E., Xia, C. & Raj, A. Connectivity, not region-intrinsic properties, predicts regional vulnerability to progressive tau pathology in mouse models of disease. Acta Neuropathol. Commun. 5, 61 (2017).

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  185. Walsh, D. M. & Selkoe, D. J. A critical appraisal of the pathogenic protein spread hypothesis of neurodegeneration. Nat. Rev. Neurosci. 17, 251–260 (2016).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  186. Small, S. A. & Swanson, L. W. A network explanation of Alzheimer’s regional vulnerability. Cold Spring Harb. Symp. Quant. Biol. 83, 193–200 (2018).

    Article  PubMed  Google Scholar 

  187. Roussarie, J. P. et al. Selective neuronal vulnerability in Alzheimer’s disease: a network-based analysis. Neuron 107, 821–835 (2020).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  188. Jagust, W. Vulnerable neural systems and the borderland of brain aging and neurodegeneration. Neuron 77, 219–234 (2013).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  189. Mattsson, N., Schott, J. M., Hardy, J., Turner, M. R. & Zetterberg, H. Selective vulnerability in neurodegeneration: Insights from clinical variants of Alzheimer’s disease. J. Neurol. Neurosurg. Psychiatry 87, 1000–1004 (2016).

    Article  PubMed  Google Scholar 

  190. Pascoal, T. A. et al. Aβ-induced vulnerability propagates via the brain’s default mode network. Nat. Commun. 10, 2353 (2019).

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  191. Vaishnavi, S. N. et al. Regional aerobic glycolysis in the human brain. Proc. Natl Acad. Sci. USA 107, 17757–17762 (2010).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  192. Tomasi, D. & Volkow, N. D. Association between functional connectivity hubs and brain networks. Cereb. Cortex 21, 2003–2013 (2011).

    Article  PubMed  PubMed Central  Google Scholar 

  193. Vlassenko, A. G. et al. Spatial correlation between brain aerobic glycolysis and amyloid-β (Aβ) deposition. Proc. Natl Acad. Sci. USA 107, 17763–17767 (2010).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  194. Hanseeuw, B. J. et al. Fluorodeoxyglucose metabolism associated with tau-amyloid interaction predicts memory decline. Ann. Neurol. 81, 583–596 (2017).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  195. Adams, J. N., Lockhart, S. N., Li, L. & Jagust, W. J. Relationships between tau and glucose metabolism reflect Alzheimer’s disease pathology in cognitively normal older adults. Cereb. Cortex 29, 1997–2009 (2019).

    Article  PubMed  Google Scholar 

  196. Ossenkoppele, R. et al. Tau PET patterns mirror clinical and neuroanatomical variability in Alzheimer’s disease. Brain 139, 1551–1567 (2016).

    Article  PubMed  PubMed Central  Google Scholar 

  197. de Haan, W., Mott, K., van Straaten, E. C. W., Scheltens, P. & Stam, C. J. Activity dependent degeneration explains hub vulnerability in Alzheimer’s disease. PLoS Comput. Biol. 8, e1002582 (2012).

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  198. Jafari, Z., Kolb, B. E. & Mohajerani, M. H. Neural oscillations and brain stimulation in Alzheimer’s disease. Prog. Neurobiol. 194, 101878 (2020).

    Article  CAS  PubMed  Google Scholar 

  199. de Haan, W., van Straaten, E. C. W., Gouw, A. A. & Stam, C. J. Altering neuronal excitability to preserve network connectivity in a computational model of Alzheimer’s disease. PLoS Comput. Biol. 13, e1005707 (2017).

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  200. Chételat, G. et al. Amyloid-PET and 18F-FDG-PET in the diagnostic investigation of Alzheimer’s disease and other dementias. Lancet Neurol. 19, 951–962 (2020).

    Article  PubMed  Google Scholar 

  201. Altmann, A., Ng, B., Landau, S. M., Jagust, W. J. & Greicius, M. D. Regional brain hypometabolism is unrelated to regional amyloid plaque burden. Brain 138, 3734–3746 (2015).

    Article  PubMed  PubMed Central  Google Scholar 

  202. Vogel, J. W. et al. Spread of pathological tau proteins through communicating neurons in human Alzheimer’s disease. Nat. Commun. 11, 2612 (2020). This computational modelling study provides evidence in humans that tau spreads through neuronal network pathways facilitated by Aβ accumulation.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  203. Detrez, J. R. et al. Progressive tau aggregation does not alter functional brain network connectivity in seeded hTau.P301L mice. Neurobiol. Dis. 143, 105011 (2020).

    Article  PubMed  Google Scholar 

  204. Vogel, J. W. et al. Four distinct trajectories of tau deposition identified in Alzheimer’s disease. Nat. Med. 27, 871–881 (2021).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  205. Raj, A. & Powell, F. Models of network spread and network degeneration in brain disorders. Biol. Psychiatry Cogn. Neurosci. Neuroimaging 3, 788–797 (2018).

    PubMed  Google Scholar 

  206. Torok, J., Maia, P. D., Powell, F., Pandya, S. & Raj, A. A method for inferring regional origins of neurodegeneration. Brain 141, 863–876 (2018).

    Article  PubMed  PubMed Central  Google Scholar 

  207. Acosta, D., Powell, F., Zhao, Y. & Raj, A. Regional vulnerability in Alzheimer’s: the role of cell-autonomous and transneuronal processes. Alzheimers Dement. 14, 797–810 (2018).

    Article  PubMed  PubMed Central  Google Scholar 

  208. Raj, A., Kuceyeski, A. & Weiner, M. A network diffusion model of disease progression in dementia. Neuron 73, 1204–1215 (2012).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  209. Stam, C. J. & Reijneveld, J. C. Graph theoretical analysis of complex networks in the brain. Nonlinear Biomed. Phys. 1, 3 (2007).

    Article  PubMed  PubMed Central  Google Scholar 

  210. van der Kant, R., Goldstein, L. S. B. & Ossenkoppele, R. Amyloid-β-independent regulators of tau pathology in Alzheimer disease. Nat. Rev. Neurosci. 21, 21–35 (2020).

    Article  PubMed  CAS  Google Scholar 

  211. Hawrylycz, M. et al. Canonical genetic signatures of the adult human brain. Nat. Neurosci. 18, 1832–1844 (2015). This landmark paper identified reproducible gene expression signatures related to functional brain connectivity.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  212. Grothe, M. J. et al. Molecular properties underlying regional vulnerability to Alzheimer’s disease pathology. Brain 141, 2755–2771 (2018).

    PubMed  PubMed Central  Google Scholar 

  213. Sepulcre, J. et al. Neurogenetic contributions to amyloid beta and tau spreading in the human cortex. Nat. Med. 24, 1910–1918 (2018). This article was one of the first linking Aβ accumulation and tau spreading with brain-wide gene expression in the human AD.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  214. Rauch, J. N. et al. LRP1 is a master regulator of tau uptake and spread. Nature 580, 381–385 (2020).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  215. Shinohara, M., Tachibana, M., Kanekiyo, T. & Bu, G. Role of LRP1 in the pathogenesis of Alzheimer’s disease: Evidence from clinical and preclinical studies. J. Lipid Res. 58, 1267–1281 (2017).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  216. Tachibana, M. et al. APOE4-mediated amyloid-β pathology depends on its neuronal receptor LRP1. J. Clin. Invest. 129, 1272–1277 (2019).

    Article  PubMed  PubMed Central  Google Scholar 

  217. Liu, Q. et al. Amyloid precursor protein regulates brain apolipoprotein E and cholesterol metabolism through lipoprotein receptor LRP1. Neuron 56, 66–78 (2007).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  218. Tsvetanov, K. A., Henson, R. N. A. & Rowe, J. B. Separating vascular and neuronal effects of age on fMRI BOLD signals. Phil. Trans. R. Soc. B 376, 20190631 (2021).

    Article  PubMed  Google Scholar 

  219. Purkayastha, S. et al. Impaired cerebrovascular hemodynamics are associated with cerebral white matter damage. J. Cereb. Blood Flow. Metab. 34, 228–234 (2014).

    Article  PubMed  Google Scholar 

  220. Buckley, R. F. et al. Associations between baseline amyloid, sex, and APOE on subsequent tau accumulation in cerebrospinal fluid. Neurobiol. Aging 78, 178–185 (2019).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  221. Sintini, I. et al. Longitudinal neuroimaging biomarkers differ across Alzheimer’s disease phenotypes. Brain 143, 2281–2294 (2020).

    Article  PubMed  PubMed Central  Google Scholar 

  222. Myszczynska, M. A. et al. Applications of machine learning to diagnosis and treatment of neurodegenerative diseases. Nat. Rev. Neurol. 16, 440–456 (2020).

    Article  PubMed  Google Scholar 

  223. McIntosh, A. R. & Mišic´, B. Multivariate statistical analyses for neuroimaging data. Annu. Rev. Psychol. 64, 499–525 (2013).

    Article  PubMed  Google Scholar 

  224. Smith, S. M. et al. A positive-negative mode of population covariation links brain connectivity, demographics and behavior. Nat. Neurosci. 18, 1565–1567 (2015).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  225. Yu, M. et al. Childhood trauma history is linked to abnormal brain connectivity in major depression. Proc. Natl Acad. Sci. USA 116, 8582–8590 (2019).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  226. Yu, M. et al. Structural brain measures linked to clinical phenotypes in major depression replicate across clinical centres. Mol. Psychiatry https://doi.org/10.1038/s41380-021-01039-8 (2021).

    Article  PubMed  PubMed Central  Google Scholar 

  227. Ferreira, D., Nordberg, A. & Westman, E. Biological subtypes of Alzheimer disease: a systematic review and meta-analysis. Neurology 94, 436–448 (2020).

    Article  PubMed  PubMed Central  Google Scholar 

  228. Long, J. M. & Holtzman, D. M. Alzheimer disease: an update on pathobiology and treatment strategies. Cell 179, 312–339 (2019).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  229. Yu, M. et al. Statistical harmonization corrects site effects in functional connectivity measurements from multi-site fMRI data. Hum. Brain Mapp. 39, 4213–4227 (2018). This paper was one of the first to use a statistical harmonization technique, called ComBat, to eliminate the impact of site effects on functional connectivity and brain network measures.

    Article  PubMed  PubMed Central  Google Scholar 

  230. Badhwar, A. et al. A multiomics approach to heterogeneity in Alzheimer’s disease: focused review and roadmap. Brain 143, 1315–1331 (2020).

    Article  PubMed  Google Scholar 

  231. Nativio, R. et al. An integrated multi-omics approach identifies epigenetic alterations associated with Alzheimer’s disease. Nat. Genet. 52, 1024–1035 (2020).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  232. Power, J. D. et al. Functional network organization of the human brain. Neuron 72, 655–678 (2011).

    Article  CAS  Google Scholar 

  233. Johnson, K. A., Fox, N. C., Sperling, R. A. & Klunk, W. E. Brain imaging in Alzheimer disease. Cold Spring Harb. Perspect. Med. 2, a006213 (2012).

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  234. Hansson, O. Biomarkers for neurodegenerative diseases. Nat. Med. 27, 954–963 (2021).

    Article  CAS  PubMed  Google Scholar 

  235. Dubois, B. et al. Preclinical Alzheimer’s disease: definition, natural history, and diagnostic criteria. Alzheimers Dement. 12, 292–323 (2016).

    Article  PubMed  PubMed Central  Google Scholar 

  236. Sperling, R. A. et al. Toward defining the preclinical stages of Alzheimer’s disease: recommendations from the National Institute on Aging-Alzheimer’s Association workgroups on diagnostic guidelines for Alzheimer’s disease. Alzheimers Dement. 7, 280–292 (2011).

    Article  PubMed  PubMed Central  Google Scholar 

  237. Jessen, F. et al. The characterisation of subjective cognitive decline. Lancet Neurol. 19, 271–278 (2020).

    Article  PubMed  PubMed Central  Google Scholar 

  238. Gauthier, S. et al. Mild cognitive impairment. Lancet 367, 1262–1270 (2006).

    Article  PubMed  Google Scholar 

  239. Jack, C. R. et al. NIA-AA research framework: toward a biological definition of Alzheimer’s disease. Alzheimers Dement. 14, 535–562 (2018).

    Article  PubMed  PubMed Central  Google Scholar 

  240. Ebenau, J. L. et al. ATN classification and clinical progression in subjective cognitive decline. Neurology 95, e46–e58 (2020).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  241. Mattsson-Carlgren, N. et al. The implications of different approaches to define AT(N) in Alzheimer disease. Neurology 94, e2233–e2244 (2020).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  242. Cousins, K. A. Q. et al. ATN status in amnestic and non-amnestic Alzheimer’s disease and frontotemporal lobar degeneration. Brain 143, 2295–2311 (2020).

    Article  PubMed  PubMed Central  Google Scholar 

  243. Badji, A. & Westman, E. Cerebrovascular pathology in Alzheimer’s disease: hopes and gaps. Psychiatry Res. Neuroimaging 306, 111184 (2020).

    Article  PubMed  Google Scholar 

  244. Love, S. & Miners, J. S. Cerebrovascular disease in ageing and Alzheimer’s disease. Acta Neuropathol. 131, 645–658 (2016).

    Article  CAS  PubMed  Google Scholar 

  245. Newman, M. E. J. Communities, modules and large-scale structure in networks. Nat. Phys. 8, 25–31 (2011).

    Article  CAS  Google Scholar 

  246. Fortunato, S. & Hric, D. Community detection in networks: a user guide. Phys. Rep. 659, 1–44 (2016).

    Article  Google Scholar 

  247. Newman, M. E. J. J. & Girvan, M. Finding and evaluating community structure in networks. Phys. Rev. E 69, 026113 (2004).

    Article  CAS  Google Scholar 

  248. Blondel, V. D., Guillaume, J.-L. L., Lambiotte, R. & Lefebvre, E. Fast unfolding of communities in large networks. J. Stat. Mech. Theory Exp. 2008, P10008 (2008).

    Article  Google Scholar 

  249. Fortunato, S. & Barthélemy, M. Resolution limit in community detection. Proc. Natl Acad. Sci. USA 104, 36–41 (2007).

    Article  CAS  PubMed  Google Scholar 

  250. Guimera, R. & Amaral, L. A. N. Functional cartography of complex metabolic networks. Nature 433, 895–900 (2005).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  251. Stam, C. J. et al. The trees and the forest: characterization of complex brain networks with minimum spanning trees. Int. J. Psychophysiol. 92, 129–138 (2014).

    Article  CAS  PubMed  Google Scholar 

  252. Zalesky, A., Fornito, A. & Bullmore, E. On the use of correlation as a measure of network connectivity. Neuroimage 60, 2096–2106 (2012).

    Article  PubMed  Google Scholar 

  253. van Wijk, B. C. M., Stam, C. J. & Daffertshofer, A. Comparing brain networks of different size and connectivity density using graph theory. PLoS One 5, e13701 (2010).

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  254. Fornito, A., Zalesky, A. & Breakspear, M. Graph analysis of the human connectome: Promise, progress, and pitfalls. Neuroimage 80, 426–444 (2013).

    Article  PubMed  Google Scholar 

  255. Garrison, K. A., Scheinost, D., Finn, E. S., Shen, X. & Constable, R. T. The (in)stability of functional brain network measures across thresholds. Neuroimage 118, 651–661 (2015).

    Article  PubMed  Google Scholar 

  256. de Reus, M. A. & van den Heuvel, M. P. Estimating false positives and negatives in brain networks. Neuroimage 70, 402–409 (2013).

    Article  PubMed  Google Scholar 

  257. van den Heuvel, M. P. et al. Proportional thresholding in resting-state fMRI functional connectivity networks and consequences for patient-control connectome studies: Issues and recommendations. Neuroimage 152, 437–449 (2017).

    Article  PubMed  Google Scholar 

  258. Tewarie, P., van Dellen, E., Hillebrand, A. & Stam, C. J. The minimum spanning tree: an unbiased method for brain network analysis. Neuroimage 104, 177–188 (2015).

    Article  CAS  PubMed  Google Scholar 

  259. Roberts, J. A., Perry, A., Roberts, G., Mitchell, P. B. & Breakspear, M. Consistency-based thresholding of the human connectome. Neuroimage 145, 118–129 (2017).

    Article  PubMed  Google Scholar 

  260. Drakesmith, M. et al. Overcoming the effects of false positives and threshold bias in graph theoretical analyses of neuroimaging data. Neuroimage 118, 313–333 (2015).

    Article  CAS  PubMed  Google Scholar 

  261. Bielczyk, N. Z. et al. Thresholding functional connectomes by means of mixture modeling. Neuroimage 171, 402–414 (2018).

    Article  PubMed  Google Scholar 

  262. Braun, U. et al. Test-retest reliability of resting-state connectivity network characteristics using fMRI and graph theoretical measures. Neuroimage 59, 1404–1412 (2012).

    Article  PubMed  Google Scholar 

  263. Brettschneider, J., Del Tredici, K., Lee, V. M. Y. & Trojanowski, J. Q. Spreading of pathology in neurodegenerative diseases: a focus on human studies. Nat. Rev. Neurosci. 16, 109–120 (2015).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  264. Scearce-Levie, K., Sanchez, P. E. & Lewcock, J. W. Leveraging preclinical models for the development of Alzheimer disease therapeutics. Nat. Rev. Drug Discov. 19, 447–462 (2020).

    Article  CAS  PubMed  Google Scholar 

  265. Bero, A. W. et al. Neuronal activity regulates the regional vulnerability to amyloid-beta deposition. Nat. Neurosci. 14, 750–756 (2011).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  266. Wu, J. W. et al. Neuronal activity enhances tau propagation and tau pathology in vivo. Nat. Neurosci. 19, 1085–1092 (2016).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  267. Iba, M. et al. Synthetic tau fibrils mediate transmission of neurofibrillary tangles in a transgenic mouse model of Alzheimer’s-like tauopathy. J. Neurosci. 33, 1024–1037 (2013).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  268. Mudher, A. et al. What is the evidence that tau pathology spreads through prion-like propagation? Acta Neuropathol. Commun. 5, 99 (2017).

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  269. Jucker, M. & Walker, L. C. Propagation and spread of pathogenic protein assemblies in neurodegenerative diseases. Nat. Neurosci. 21, 1341–1349 (2018).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  270. Stancu, I. C. et al. Templated misfolding of Tau by prion-like seeding along neuronal connections impairs neuronal network function and associated behavioral outcomes in Tau transgenic mice. Acta Neuropathol. 129, 875–894 (2015).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  271. Bassil, F. et al. Amyloid-beta (Aβ) plaques promote seeding and spreading of alpha-synuclein and tau in a mouse model of Lewy body disorders with Aβ pathology. Neuron 105, 260–275.e6 (2020).

    Article  CAS  PubMed  Google Scholar 

  272. Götz, J., Bodea, L. G. & Goedert, M. Rodent models for Alzheimer disease. Nat. Rev. Neurosci. 19, 583–598 (2018).

    Article  PubMed  CAS  Google Scholar 

  273. Kitazawa, M., Medeiros, R. & LaFerla, M. F. Transgenic mouse models of Alzheimer disease: developing a better model as a tool for therapeutic interventions. Curr. Pharm. Des. 18, 1131–1147 (2012).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  274. Myers, A. & McGonigle, P. Overview of transgenic mouse models for Alzheimer’s disease. Curr. Protoc. Neurosci. 89, e81 (2019).

    Article  PubMed  Google Scholar 

  275. Breakspear, M. Dynamic models of large-scale brain activity. Nat. Neurosci. 20, 340–352 (2017). This review discusses multiple computational models of brain activity dynamics.

    Article  CAS  PubMed  Google Scholar 

  276. Cabral, J., Kringelbach, M. L. & Deco, G. Exploring the network dynamics underlying brain activity during rest. Prog. Neurobiol. 114, 102–131 (2014).

    Article  PubMed  Google Scholar 

  277. Iturria-Medina, Y., Sotero, R. C., Toussaint, P. J. & Evans, A. C. Epidemic spreading model to characterize misfolded proteins propagation in aging and associated neurodegenerative disorders. PLoS Comput. Biol. 10, e1003956 (2014).

    Article  PubMed  PubMed Central  CAS  Google Scholar 

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Acknowledgements

The preparation of this manuscript was supported in part by U.S. National Institutes of Health grants: R01 AG197711, P30 AG10133, 1U01AG024904, R01 CA129769, R01 AG057739, R01 LM013463, R01 AG068193 and U01 AG068057. The authors would like to thank Dr. Martijn van den Heuvel for assisting with the drawing of Fig. 1b. The authors thank Dr. Kwangsik Nho and Dr. Shannon Risacher for valuable discussions.

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M. Y. researched data for the article, made a substantial contribution to discussion of content, wrote the article, and reviewed and edited the manuscript before submission. O. S. and A. J. S. researched data for the article, made a substantial contribution to discussion of content, and reviewed and edited the manuscript before submission.

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Correspondence to Andrew J. Saykin.

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Nature Reviews Neurology thanks B. Bendlin, who co-reviewed with A. Kohli, A. Raj and the other, anonymous, reviewer(s) for their contribution to the peer review of this work.

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Related links

Allen Human Brain Atlas: http://human.brain-map.org/

Alzheimer’s Disease Neuroimaging Initiative: http://adni.loni.usc.edu/

BioFINDER: https://biofinder.se/

Human Connectome Project: https://www.humanconnectome.org/

Glossary

Cytoarchitectonics

The study of the spatial distribution pattern of neurons within the central nervous system; the size, shape, packing density and staining intensity of neuronal cell bodies in six layers are used to characterize a specific cytoarchitectural area.

Clustering coefficient

The fraction of a node’s directly connected neighbours that are also neighbours of each other.

Path length

The number of links connecting any two nodes in a network.

Centrality

Measures that quantify the importance of a node or a link in a network.

Modularity

A measure that quantifies the degree to which a network can be partitioned into subnetworks or modules.

Small-world

A network property of high average clustering coefficient and short average shortest path length.

Rich-club

A network has this property when nodes with high degree centrality are more densely interconnected between each other than expected.

Global efficiency

The average inverse shortest path length in the network.

Local efficiency

The inverse of the average shortest path length of all neighbours of the node and an alternative local connectivity metric to the clustering coefficient.

Degree centrality

The number of links a node has to other nodes in a network.

Epidemic spreading models

(ESM). Computational models simulating the spreading patterns of amyloid-β and tau from a preselected epicentre to different brain regions via structural connections.

Euclidean distance matrix

A symmetric matrix, in which each element is computed by estimating the Euclidean distance between the centre coordinates of two brain regions.

Network diffusion models

(NDMs). Computational models simulating Alzheimer disease progression on brain networks using a network heat equation.

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Yu, M., Sporns, O. & Saykin, A.J. The human connectome in Alzheimer disease — relationship to biomarkers and genetics. Nat Rev Neurol 17, 545–563 (2021). https://doi.org/10.1038/s41582-021-00529-1

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