Foundation models hold great promise for analyzing single-cell omics data, yet various challenges remain that require further advancements. In this Comment, we discuss the progress, limitations and best practices in applying foundation models to interrogate data and improve downstream tasks in single-cell omics.
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Ma, Q., Jiang, Y., Cheng, H. et al. Harnessing the deep learning power of foundation models in single-cell omics. Nat Rev Mol Cell Biol 25, 593–594 (2024). https://doi.org/10.1038/s41580-024-00756-6
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DOI: https://doi.org/10.1038/s41580-024-00756-6
