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The National Microbiome Data Collaborative: enabling microbiome science

Nature Reviews Microbiology volume 18, pages 313–314 (2020)Cite this article

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To harness the potential of microbiome science across the broad range of relevant disciplines, new approaches to data infrastructure and transdisciplinary collaboration are necessary. The National Microbiome Data Collaborative (NMDC) is a new initiative to support microbiome data exploration and discovery through a collaborative, integrative data science ecosystem.

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Authors and Affiliations

  1. Lawrence Berkeley National Laboratory, Berkeley, CA, USA

    Elisha M. Wood-Charlson, Shweta Deshpande, William D. Duncan, David Hays, Marcel Huntemann, Kayd Miller, T.B.K. Reddy, Jagadish Chandrabose Sundaramurthi, Pajau Vangay, Shane Canon, Kjiersten Fagnan, Christopher J. Mungall, Nigel J. Mouncey, Mary E. Maxon & Emiley A. Eloe-Fadrosh

  2. Pacific Northwest National Laboratory, Richland, WA, USA

    Anubhav, Deanna Auberry, Mark I. Borkum, Yuri E. Corilo, Mary Lipton, David Millard, Paul D. Piehowski, Samuel Purvine & Lee Ann McCue

  3. Oak Ridge National Laboratory, Oak Ridge, TN, USA

    Hannah Blanco, Ranjeet Devarakonda, Meghan Drake, Yaxing Wei, Bruce E. Wilson & Stanton Martin

  4. Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM, USA

    Karen W. Davenport, Mark C. Flynn, Bin Hu, Po-E Li, Chien-Chi Lo, Migun Shakya & Patrick S. G. Chain

Authors
  1. Elisha M. Wood-Charlson
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  2. Anubhav
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  6. Yuri E. Corilo
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  7. Karen W. Davenport
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  10. Meghan Drake
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  11. William D. Duncan
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  13. David Hays
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  14. Bin Hu
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  15. Marcel Huntemann
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  16. Po-E Li
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  17. Mary Lipton
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  18. Chien-Chi Lo
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  19. David Millard
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  20. Kayd Miller
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  21. Paul D. Piehowski
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  22. Samuel Purvine
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  23. T.B.K. Reddy
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  24. Migun Shakya
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  25. Jagadish Chandrabose Sundaramurthi
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  26. Pajau Vangay
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  27. Yaxing Wei
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  28. Bruce E. Wilson
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  29. Shane Canon
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  30. Patrick S. G. Chain
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  31. Kjiersten Fagnan
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  32. Stanton Martin
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  33. Lee Ann McCue
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  34. Christopher J. Mungall
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  35. Nigel J. Mouncey
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  36. Mary E. Maxon
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  37. Emiley A. Eloe-Fadrosh
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Corresponding author

Correspondence to Emiley A. Eloe-Fadrosh.

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Competing interests

The authors declare no competing interests.

Additional information

Related links

Australian Microbiome Initiative: www.australianmicrobiome.com

Brazilian Microbiome Project: www.brmicrobiome.org

Center for Scientific Collaboration and Community Engagement: https://www.cscce.org

EMSL: https://search.emsl.pnnl.gov

FAIR Microbiome Implementation Network: https://www.go-fair.org/implementation-networks/overview/fair-microbiome

GOLD: https://gold.jgi.doe.gov

Metagenome workflows: https://github.com/microbiomedata/WorkflowPlanning

National Microbiome Data Collaborative: https://microbiomedata.org

NMDC Champion programme: https://microbiomedata.org/nmdc-champions

NMDC Code of Conduct: https://microbiomedata.org/nmdc-code-of-conduct

NMDC metadata schema: https://github.com/microbiomedata/nmdc-metadata

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Wood-Charlson, E.M., Anubhav, Auberry, D. et al. The National Microbiome Data Collaborative: enabling microbiome science. Nat Rev Microbiol 18, 313–314 (2020). https://doi.org/10.1038/s41579-020-0377-0

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