Skip to main content

Thank you for visiting nature.com. You are using a browser version with limited support for CSS. To obtain the best experience, we recommend you use a more up to date browser (or turn off compatibility mode in Internet Explorer). In the meantime, to ensure continued support, we are displaying the site without styles and JavaScript.

  • Review Article
  • Published:

Steering chemical reactions with force

Abstract

Chemical reactivity underlies our fundamental understanding of many physical and biological phenomena. Chemical reactions are typically initiated by heat, electric current or light. Albeit far less studied, mechanical force is yet another way to orthogonally catalyse chemical reactions. An applied force can substantially reduce the reaction energy barrier, thus enabling reaction pathways that are too slow (or even forbidden) according to the laws of thermodynamics. Single-molecule nanomechanical techniques, including optical and magnetic tweezers and atomic force microscopy, offer the possibility to apply a directional force on an individual chemical bond. In non-covalent (or soft) mechanochemistry, low, sub-nN forces trigger bond rotation or hydrogen-bond rupture. By contrast, in covalent mechanochemistry, higher forces typically result in the breaking and re-forming of individual bonds. This Review focuses on the advances in our mechanistic understanding of single-bond mechanochemistry resulting from single-molecule measurements, as well as on the exciting new perspectives that we envision for this burgeoning field in the near future.

This is a preview of subscription content, access via your institution

Access options

Buy this article

Prices may be subject to local taxes which are calculated during checkout

Figure 1: The magnitude of the externally applied force determines the degree of mechanical disruption of the bond under force.
Figure 2: Non-covalent mechanochemistry on biopolymers.
Figure 3: Covalent mechanochemistry on synthetic polymers.
Figure 4: Covalent mechanochemistry: the homolytic rupture of covalent bonds.
Figure 5: Covalent mechanochemistry: the heterolytic rupture of covalent disulfide bonds.
Figure 6: The force dependency of disulfide bond rupture.
Figure 7: The (reversible) reformation of individual disulfide bonds within the context of oxidative folding determines protein nanomechanics.

Similar content being viewed by others

References

  1. Ribas-Arino, J. & Marx, D. Covalent mechanochemistry: theoretical concepts and computational tools with applications to molecular nanomechanics. Chem. Rev. 112, 5412–5487 (2012).

    CAS  PubMed  Google Scholar 

  2. Turro, N. J., Ramamurthy, V. & Scaiano, J. C. Principles of Molecular Photochemistry (Univ. Sci. Books, 2009).

    Google Scholar 

  3. Bard, A. J. & Faulkner, L. R. Electrochemical Methods: Fundamentals and Applications 2nd edn (Wiley, 2001).

    Google Scholar 

  4. Beyer, M. K. & Clausen-Schaumann, H. Mechanochemistry: the mechanical activation of covalent bonds. Chem. Rev. 105, 2921–2948 (2005).

    CAS  PubMed  Google Scholar 

  5. Hernandez, J. G. & Bolm, C. Altering product selectivity by mechanochemistry. J. Org. Chem. 82, 4007–4019 (2017).

    CAS  PubMed  Google Scholar 

  6. May, P. A. & Moore, J. S. Polymer mechanochemistry: techniques to generate molecular force via elongational flows. Chem. Soc. Rev. 42, 7497–7506 (2013).

    CAS  PubMed  Google Scholar 

  7. Ribas-Arino, J., Shiga, M. & Marx, D. Mechanochemical transduction of externally applied forces to mechanophores. J. Am. Chem. Soc. 132, 10609–10614 (2010).

    CAS  PubMed  Google Scholar 

  8. Ribas-Arino, J., Shiga, M. & Marx D. Understanding covalent mechanochemistry. Angew. Chem. Int. Ed. 48, 4190–4193 (2009).

    CAS  Google Scholar 

  9. Ong, M. T., Leiding, J., Tao, H., Virshup, A. M. & Martinez, T. J. First principles dynamics and minimum energy pathways for mechanochemical ring opening of cyclobutene. J. Am. Chem. Soc. 131, 6377–6379 (2009).

    CAS  PubMed  Google Scholar 

  10. Hickenboth, C. R. et al. Biasing reaction pathways with mechanical force. Nature 446, 423–427 (2007).

    CAS  PubMed  Google Scholar 

  11. Lenhardt, J. M., Black, A. L. & Craig, S. L. gem-Dichlorocyclopropanes as abundant and efficient mechanophores in polybutadiene copolymers under mechanical stress. J. Am. Chem. Soc. 131, 10818–10819 (2009).

    CAS  PubMed  Google Scholar 

  12. Lenhardt, J. M. et al. Trapping a diradical transition state by mechanochemical polymer extension. Science 329, 1057–1060 (2010).

    CAS  PubMed  Google Scholar 

  13. Klukovich, H. M. et al. Tension trapping of carbonyl ylides facilitated by a change in polymer backbone. J. Am. Chem. Soc. 134, 9577–9580 (2012).

    CAS  PubMed  Google Scholar 

  14. Huang, Z. & Boulatov, R. Chemomechanics: chemical kinetics for multiscale phenomena. Chem. Soc. Rev. 40, 2359–2384 (2011).

    CAS  PubMed  Google Scholar 

  15. Ladenthin, J. N. et al. Force-induced tautomerization in a single molecule. Nat. Chem. 8, 935–940 (2016).

    CAS  PubMed  Google Scholar 

  16. Schuler, B. et al. Reversible Bergman cyclization by atomic manipulation. Nat. Chem. 8, 220–224 (2016).

    CAS  PubMed  Google Scholar 

  17. Pavlicˇek, N. et al. Synthesis and characterization of triangulene. Nat. Nanotechnol 12, 308–311 (2017).

    Google Scholar 

  18. Pavlicˇek, N. & Gross, L. Generation, manipulation and characterization of molecules by atomic force microscopy. Nat. Rev. Chem. 1, 11 (2017).

    Google Scholar 

  19. Neuman, K. C. & Nagy, A. Single-molecule force spectroscopy: optical tweezers, magnetic tweezers and atomic force microscopy. Nat. Methods 5, 491–505 (2008).

    CAS  PubMed  PubMed Central  Google Scholar 

  20. Clausen-Schaumann, H., Seitz, M., Krautbauer, R. & Gaub, H. E. Force spectroscopy with single bio-molecules. Curr. Opin. Chem. Biol. 4, 524–530 (2000).

    CAS  PubMed  Google Scholar 

  21. Stauch, T. & Dreuw, A. Advances in quantum mechanochemistry: electronic structure methods and force analysis. Chem. Rev. 116, 14137–14180 (2016).

    CAS  PubMed  Google Scholar 

  22. Grandbois, M., Beyer, M., Rief, M., Clausen-Schaumann, H. & Gaub, H. E. How strong is a covalent bond? Science 283, 1727–1730 (1999).

    CAS  PubMed  Google Scholar 

  23. Marszalek, P. E. & Dufrene, Y. F. Stretching single polysaccharides and proteins using atomic force microscopy. Chem. Soc. Rev. 41, 3523–3534 (2012).

    CAS  PubMed  Google Scholar 

  24. Rief, M., Oesterhelt, F., Heymann, B. & Gaub, H. E. Single molecule force spectroscopy on polysaccharides by atomic force microscopy. Science 275, 1295–1297 (1997).

    CAS  PubMed  Google Scholar 

  25. Li, H. B. et al. Single-molecule force spectroscopy on polysaccharides by AFM — nanomechanical fingerprint of α-(1,4)-linked polysaccharides. Chem. Phys. Lett. 305, 197–201 (1999).

    CAS  Google Scholar 

  26. Marszalek, P. E., Oberhauser, A. F., Pang, Y. P. & Fernandez, J. M. Polysaccharide elasticity governed by chair–boat transitions of the glucopyranose ring. Nature 396, 661–664 (1998).

    CAS  PubMed  Google Scholar 

  27. Marszalek, P. E., Li, H. & Fernandez, J. M. Fingerprinting polysaccharides with single-molecule atomic force microscopy. Nat. Biotechnol. 19, 258–262 (2001).

    CAS  PubMed  Google Scholar 

  28. Marszalek, P. E., Li, H., Oberhauser, A. F. & Fernandez, J. M. Chair–boat transitions in single polysaccharide molecules observed with force-ramp AFM. Proc. Natl Acad. Sci. USA 99, 4278–4283 (2002).

    CAS  PubMed  PubMed Central  Google Scholar 

  29. Valiaev, A., Lim, D. W., Oas, T. G., Chilkoti, A. & Zauscher, S. Force-induced prolyl cistrans isomerization in elastin-like polypeptides. J. Am. Chem. Soc. 129, 6491–6497 (2007).

    CAS  PubMed  Google Scholar 

  30. Rognoni, L., Most, T., Zoldak, G. & Rief, M. Force-dependent isomerization kinetics of a highly conserved proline switch modulates the mechanosensing region of filamin. Proc. Natl Acad. Sci. USA 111, 5568–5573 (2014).

    CAS  PubMed  PubMed Central  Google Scholar 

  31. Hugel, T. et al. Single-molecule optomechanical cycle. Science 296, 1103–1106 (2002).

    PubMed  Google Scholar 

  32. Smith, S. B., Cui, Y. & Bustamante, C. Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules. Science 271, 795–799 (1996).

    CAS  PubMed  Google Scholar 

  33. Bustamante, C., Smith, S. B., Liphardt, J. & Smith, D. Single-molecule studies of DNA mechanics. Curr. Opin. Struct. Biol. 10, 279–285 (2000).

    CAS  PubMed  Google Scholar 

  34. Bianco, P., Bongini, L., Melli, L., Dolfi, M. & Lombardi, V. PicoNewton-millisecond force steps reveal the transition kinetics and mechanism of the double-stranded DNA elongation. Biophys. J. 101, 866–874 (2011).

    CAS  PubMed  PubMed Central  Google Scholar 

  35. Rief, M., Clausen-Schaumann, H. & Gaub, H. E. Sequence-dependent mechanics of single DNA molecules. Nat. Struct. Biol. 6, 346–349 (1999).

    CAS  PubMed  Google Scholar 

  36. Woodside, M. T. et al. Direct measurement of the full, sequence-dependent folding landscape of a nucleic acid. Science 314, 1001–1004 (2006).

    CAS  PubMed  PubMed Central  Google Scholar 

  37. Woodside, M. T. et al. Nanomechanical measurements of the sequence-dependent folding landscapes of single nucleic acid hairpins. Proc. Natl Acad. Sci. USA 103, 6190–6195 (2006).

    CAS  PubMed  PubMed Central  Google Scholar 

  38. Marszalek, P. E. et al. Mechanical unfolding intermediates in titin modules. Nature 402, 100–103 (1999).

    CAS  PubMed  Google Scholar 

  39. Lu, H. & Schulten, K. The key event in force-induced unfolding of Titin's immunoglobulin domains. Biophys. J. 79, 51–65 (2000).

    CAS  PubMed  PubMed Central  Google Scholar 

  40. Carrion-Vazquez, M. et al. Mechanical and chemical unfolding of a single protein: a comparison. Proc. Natl Acad. Sci. USA 96, 3694–3699 (1999).

    CAS  PubMed  PubMed Central  Google Scholar 

  41. Hughes, M. L. & Dougan, L. The physics of pulling polyproteins: a review of single molecule force spectroscopy using the AFM to study protein unfolding. Rep. Prog. Phys. 79, 076601 (2016).

    PubMed  Google Scholar 

  42. Valbuena, A. et al. On the remarkable mechanostability of scaffoldins and the mechanical clamp motif. Proc. Natl Acad. Sci. USA 106, 13791–13796 (2009).

    CAS  PubMed  PubMed Central  Google Scholar 

  43. Rief, M., Gautel, M., Oesterhelt, F., Fernandex, J. M. & Gaub, H. E. Reversible unfolding of individual titin immunoglobulin domains by AFM. Science 276, 1109–1112 (1997).

    CAS  PubMed  Google Scholar 

  44. Kellermayer, M. S., Smith, S. B., Granzier, H. L. & Bustamante, C. Folding–unfolding transitions in single titin molecules characterized with laser tweezers. Science 276, 1112–1116 (1997).

    CAS  PubMed  Google Scholar 

  45. Carrion-Vazquez, M. et al. The mechanical stability of ubiquitin is linkage dependent. Nat. Struct. Biol. 10, 738–743 (2003).

    CAS  PubMed  Google Scholar 

  46. Brockwell, D. J. et al. Pulling geometry defines the mechanical resistance of a β-sheet protein. Nat. Struct. Biol. 10, 731–737 (2003).

    CAS  PubMed  Google Scholar 

  47. Dietz, H., Berkemeier, F., Bertz, M. & Rief, M. Anisotropic deformation response of single protein molecules. Proc. Natl Acad. Sci. USA 103, 12724–12728 (2006).

    CAS  PubMed  PubMed Central  Google Scholar 

  48. Stirnemann, G., Kang, S. G., Zhou, R. H. & Berne, B. J. How force unfolding differs from chemical denaturation. Proc. Natl Acad. Sci. USA 111, 3413–3418 (2014).

    CAS  Google Scholar 

  49. Berkovich, R. et al. Rate limit of protein elastic response is tether dependent. Proc. Natl Acad. Sci. USA 109, 14416–14421 (2012).

    CAS  PubMed  PubMed Central  Google Scholar 

  50. Schoeler, C. et al. Mapping mechanical force propagation through biomolecular complexes. Nano Lett. 15, 7370–7376 (2015).

    CAS  PubMed  PubMed Central  Google Scholar 

  51. Stacklies, W., Vega, M. C., Wilmanns, M. & Grater, F. Mechanical network in titin immunoglobulin from force distribution analysis. PLoS Comput. Biol. 5, e1000306 (2009).

    PubMed  PubMed Central  Google Scholar 

  52. Schlierf, M., Li, H. & Fernandez, J. M. The unfolding kinetics of ubiquitin captured with single-molecule force-clamp techniques. Proc. Natl Acad. Sci. USA 101, 7299–7304 (2004).

    CAS  PubMed  PubMed Central  Google Scholar 

  53. Brujic, J., Hermans, R. I., Garcia-Manyes, S., Walther, K. A. & Fernandez, J. M. Dwell-time distribution analysis of polyprotein unfolding using force-clamp spectroscopy. Biophys. J. 92, 2896–2903 (2007).

    CAS  PubMed  PubMed Central  Google Scholar 

  54. Garcia-Manyes, S., Brujic, J., Badilla, C. L. & Fernandez, J. M. Force-clamp spectroscopy of single-protein monomers reveals the individual unfolding and folding pathways of I27 and ubiquitin. Biophys. J. 93, 2436–2446 (2007).

    CAS  PubMed  PubMed Central  Google Scholar 

  55. Lannon, H., Vanden-Eijnden, E. & Brujic, J. Force-clamp analysis techniques give highest rank to stretched exponential unfolding kinetics in ubiquitin. Biophys. J. 103, 2215–2222 (2012).

    CAS  PubMed  PubMed Central  Google Scholar 

  56. Kuo, T. L. et al. Probing static disorder in Arrhenius kinetics by single-molecule force spectroscopy. Proc. Natl Acad. Sci. USA 107, 11336–11340 (2010).

    CAS  PubMed  PubMed Central  Google Scholar 

  57. Garcia-Manyes, S., Kuo, T. L. & Fernandez, J. M. Contrasting the individual reactive pathways in protein unfolding and disulfide bond reduction observed within a single protein. J. Am. Chem. Soc. 133, 3104–3113 (2011).

    CAS  PubMed  PubMed Central  Google Scholar 

  58. Brujic, J., Hermans, R. I., Walther, K. A. & Fernandez, J. M. Single-molecule force spectroscopy reveals signatures of glassy dynamics in the energy landscape of ubiquitin. Nat. Phys. 2, 282–286 (2006).

    CAS  Google Scholar 

  59. Bell, G. I. Models for the specific adhesion of cells to cells. Science 200, 618–627 (1978).

    CAS  PubMed  Google Scholar 

  60. Zheng, P. & Li, H. Highly covalent ferric–thiolate bonds exhibit surprisingly low mechanical stability. J. Am. Chem. Soc. 133, 6791–6798 (2011).

    CAS  PubMed  Google Scholar 

  61. Cecconi, C., Shank, E. A., Bustamante, C. & Marqusee, S. Direct observation of the three-state folding of a single protein molecule. Science 309, 2057–2060 (2005).

    CAS  PubMed  Google Scholar 

  62. Jagannathan, B., Elms, P. J., Bustamante, C. & Marqusee, S. Direct observation of a force-induced switch in the anisotropic mechanical unfolding pathway of a protein. Proc. Natl Acad. Sci. USA 109, 17820–17825 (2012).

    CAS  PubMed  PubMed Central  Google Scholar 

  63. Garcia-Manyes, S., Dougan, L., Badilla, C. L., Brujic, J. & Fernandez, J. M. Direct observation of an ensemble of stable collapsed states in the mechanical folding of ubiquitin. Proc. Natl Acad. Sci. USA 106, 10534–10539 (2009).

    CAS  PubMed  PubMed Central  Google Scholar 

  64. Garcia-Manyes, S., Dougan, L. & Fernandez, J. M. Osmolyte-induced separation of the mechanical folding phases of ubiquitin. Proc. Natl Acad. Sci. USA 106, 10540–10545 (2009).

    CAS  PubMed  PubMed Central  Google Scholar 

  65. Dudko, O. K., Hummer, G. & Szabo, A. Intrinsic rates and activation free energies from single-molecule pulling experiments. Phys. Rev. Lett. 96, 108101 (2006).

    PubMed  Google Scholar 

  66. Dudko, O. K., Hummer, G. & Szabo, A. Theory, analysis, and interpretation of single-molecule force spectroscopy experiments. Proc. Natl Acad. Sci. USA 105, 15755–15760 (2008).

    CAS  PubMed  PubMed Central  Google Scholar 

  67. Popa, I., Fernandez, J. M. & Garcia-Manyes, S. Direct quantification of the attempt frequency determining the mechanical unfolding of ubiquitin protein. J. Biol. Chem. 286, 31072–31079 (2011).

    CAS  PubMed  PubMed Central  Google Scholar 

  68. Chung, J., Kushner, A. M., Weisman, A. C. & Guan, Z. Direct correlation of single-molecule properties with bulk mechanical performance for the biomimetic design of polymers. Nat. Mater. 13, 1055–1062 (2014).

    CAS  PubMed  Google Scholar 

  69. Caruso, M. M. et al. Mechanically-induced chemical changes in polymeric materials. Chem. Rev. 109, 5755–5798 (2009).

    CAS  PubMed  Google Scholar 

  70. Lee, B., Niu, Z., Wang, J., Slebodnick, C. & Craig, S. L. Relative mechanical strengths of weak bonds in sonochemical polymer mechanochemistry. J. Am. Chem. Soc. 137, 10826–10832 (2015).

    CAS  PubMed  Google Scholar 

  71. Li, J., Nagamani, C. & Moore, J. S. Polymer mechanochemistry: from destructive to productive. Acc. Chem. Res. 48, 2181–2190 (2015).

    CAS  PubMed  Google Scholar 

  72. Wu, D., Lenhardt, J. M., Black, A. L., Akhremitchev, B. B. & Craig, S. L. Molecular stress relief through a force-induced irreversible extension in polymer contour length. J. Am. Chem. Soc. 132, 15936–15938 (2010).

    CAS  PubMed  Google Scholar 

  73. Wang, J. P. et al. Inducing and quantifying forbidden reactivity with single-molecule polymer mechanochemistry. Nat. Chem. 7, 323–327 (2015).

    CAS  PubMed  Google Scholar 

  74. Wang, J. P., Kouznetsova, T. B. & Craig, S. L. Reactivity and mechanism of a mechanically activated anti-Woodward–Hoffmann–DePuy reaction. J. Am. Chem. Soc. 137, 11554–11557 (2015).

    CAS  PubMed  Google Scholar 

  75. Wang, J. et al. Catch and release: orbital symmetry guided reaction dynamics from a freed “tension trapped transition state”. J. Org. Chem. 80, 11773–11778 (2015).

    CAS  PubMed  Google Scholar 

  76. Wang, J., Kouznetsova, T. B. & Craig, S. L. Single-molecule observation of a mechanically activated cis-to-trans cyclopropane isomerization. J. Am. Chem. Soc. 138, 10410–10412 (2016).

    CAS  PubMed  Google Scholar 

  77. Gossweiler, G. R., Kouznetsova, T. B. & Craig, S. L. Force-rate characterization of two spiropyran-based molecular force probes. J. Am. Chem. Soc. 137, 6148–6151 (2015).

    CAS  PubMed  Google Scholar 

  78. Davis, D. A. et al. Force-induced activation of covalent bonds in mechanoresponsive polymeric materials. Nature 459, 68–72 (2009).

    CAS  PubMed  Google Scholar 

  79. Huang, W. et al. Single molecule study of force-induced rotation of carbon–carbon double bonds in polymers. ACS Nano 11, 194–203 (2017).

    CAS  PubMed  Google Scholar 

  80. Hanson, D. E. & Martin, R. L. How far can a rubber molecule stretch before breaking? Ab initio study of tensile elasticity and failure in single-molecule polyisoprene and polybutadiene. J. Chem. Phys. 130, 064903 (2009).

    PubMed  Google Scholar 

  81. Li, H. & Walker, G. C. Twist and shout: single-molecule mechanochemistry. ACS Nano 11, 28–30 (2017).

    CAS  PubMed  Google Scholar 

  82. Chen, Z. et al. Mechanochemical unzipping of insulating polyladderene to semiconducting polyacetylene. Science 357, 475–479 (2017).

    CAS  PubMed  Google Scholar 

  83. Ainavarapu, S. R., Wiita, A. P., Huang, H. H. & Fernandez, J. M. A single-molecule assay to directly identify solvent-accessible disulfide bonds and probe their effect on protein folding. J. Am. Chem. Soc. 130, 436–437 (2008).

    CAS  PubMed  Google Scholar 

  84. Lantz, M. A. et al. Quantitative measurement of short-range chemical bonding forces. Science 291, 2580–2583 (2001).

    CAS  PubMed  Google Scholar 

  85. Glaser, T., Hedman, B., Hodgson, K. O. & Solomon, E. I. Ligand K-edge X-ray absorption spectroscopy: a direct probe of ligand–metal covalency. Acc. Chem. Res. 33, 859–868 (2000).

    CAS  PubMed  Google Scholar 

  86. Zheng, P. & Li, H. Direct measurements of the mechanical stability of zinc-thiolate bonds in rubredoxin by single-molecule atomic force microscopy. Biophys. J. 101, 1467–1473 (2011).

    CAS  PubMed  PubMed Central  Google Scholar 

  87. Solomon, E. I., Gorelsky, S. I. & Dey, A. Metal–thiolate bonds in bioinorganic chemistry. J. Comput. Chem. 27, 1415–1428 (2006).

    CAS  PubMed  Google Scholar 

  88. Perales-Calvo, J., Lezamiz, A. & Garcia-Manyes, S. The mechanochemistry of a structural zinc finger. J. Phys. Chem. Lett. 6, 3335–3340 (2015).

    CAS  PubMed  Google Scholar 

  89. Beedle, A. E. M., Lezamiz, A., Stirnemann, G. & Garcia-Manyes, S. The mechanochemistry of copper reports on the directionality of unfolding in model cupredoxin proteins. Nat. Commun. 6, 7894 (2015).

    CAS  PubMed  Google Scholar 

  90. Solomon, E. I., Hare, J. W. & Gray, H. B. Spectroscopic studies and a structural model for blue copper centers in proteins. Proc. Natl Acad. Sci. USA 73, 1389–1393 (1976).

    CAS  PubMed  PubMed Central  Google Scholar 

  91. Liu, J. et al. Metalloproteins containing cytochrome, iron–sulfur, or copper redox centers. Chem. Rev. 114, 4366–4469 (2014).

    CAS  PubMed  PubMed Central  Google Scholar 

  92. Wei, W. et al. Structural insights and the surprisingly low mechanical stability of the Au–S bond in the gold-specific protein GolB. J. Am. Chem. Soc. 137, 15358–15361 (2015).

    CAS  PubMed  Google Scholar 

  93. Xue, Y. R., Li, X., Li, H. B. & Zhang, W. K. Quantifying thiol–gold interactions towards the efficient strength control. Nat. Commun. 5, 4348 (2014).

    CAS  PubMed  Google Scholar 

  94. Zheng, P., Takayama, S. J., Mauk, A. G. & Li, H. Hydrogen bond strength modulates the mechanical strength of ferric–thiolate bonds in rubredoxin. J. Am. Chem. Soc. 134, 4124–4131 (2012).

    CAS  PubMed  Google Scholar 

  95. Zheng, P., Chou, C. C., Guo, Y., Wang, Y. & Li, H. Single molecule force spectroscopy reveals the molecular mechanical anisotropy of the FeS4 metal center in rubredoxin. J. Am. Chem. Soc. 135, 17783–17792 (2013).

    CAS  PubMed  Google Scholar 

  96. Lei, H. et al. Reversible unfolding and folding of the metalloprotein ferredoxin revealed by single-molecule atomic force microscopy. J. Am. Chem. Soc. 139, 1538–1544 (2017).

    CAS  PubMed  Google Scholar 

  97. Zheng, P., Wang, Y. & Li, H. Reversible unfolding–refolding of rubredoxin: a single-molecule force spectroscopy study. Angew. Chem. Int. Ed. 53, 14060–14063 (2014).

    CAS  Google Scholar 

  98. Arantes, G. M., Bhattacharjee, A. & Field, M. J. Homolytic cleavage of Fe–S bonds in rubredoxin under mechanical stress. Angew. Chem. Int. Ed. 52, 8144–8146 (2013).

    CAS  Google Scholar 

  99. Zheng, P., Arantes, G. M., Field, M. J. & Li, H. Force-induced chemical reactions on the metal centre in a single metalloprotein molecule. Nat. Commun. 6, 7569 (2015).

    CAS  PubMed  Google Scholar 

  100. Aktah, D. & Frank, I. Breaking bonds by mechanical stress: when do electrons decide for the other side? J. Am. Chem. Soc. 124, 3402–3406 (2002).

    CAS  PubMed  Google Scholar 

  101. Wiita, A. P., Ainavarapu, S. R., Huang, H. H. & Fernandez, J. M. Force-dependent chemical kinetics of disulfide bond reduction observed with single-molecule techniques. Proc. Natl Acad. Sci. USA 103, 7222–7227 (2006).

    CAS  PubMed  PubMed Central  Google Scholar 

  102. Anfinsen, C. B. & Haber, E. Studies on the reduction and re-formation of protein disulfide bonds. J. Biol. Chem. 236, 1361–1363 (1961).

    CAS  PubMed  Google Scholar 

  103. Ainavarapu, S. R. et al. Contour length and refolding rate of a small protein controlled by engineered disulfide bonds. Biophys. J. 92, 225–233 (2007).

    CAS  PubMed  Google Scholar 

  104. Carl, P., Kwok, C. H., Manderson, G., Speicher, D. W. & Discher, D. E. Forced unfolding modulated by disulfide bonds in the Ig domains of a cell adhesion molecule. Proc. Natl Acad. Sci. USA 98, 1565–1570 (2001).

    CAS  PubMed  PubMed Central  Google Scholar 

  105. Hogg, P. J. Disulfide bonds as switches for protein function. Trends Biochem. Sci. 28, 210–214 (2003).

    CAS  PubMed  Google Scholar 

  106. Bach, R. D., Dmitrenko, O. & Thorpe, C. Mechanism of thiolate–disulfide interchange reactions in biochemistry. J. Org. Chem. 73, 12–21 (2008).

    CAS  PubMed  Google Scholar 

  107. Whitesides, G. M., Houk, J. & Patterson, M. A. K. Activation parameters for thiolate disulfide interchange reactions in aqueous-solution. J. Org. Chem. 48, 112–115 (1983).

    CAS  Google Scholar 

  108. Nagy, P. Kinetics and mechanisms of thiol-disulfide exchange covering direct substitution and thiol oxidation-mediated pathways. Antioxid. Redox Signal. 18, 1623–1641 (2013).

    CAS  PubMed  PubMed Central  Google Scholar 

  109. Liang, J. & Fernandez, J. M. Mechanochemistry: one bond at a time. ACS Nano 3, 1628–1645 (2009).

    CAS  PubMed  PubMed Central  Google Scholar 

  110. Kucharski, T. J. et al. Kinetics of thiol/disulfide exchange correlate weakly with the restoring force in the disulfide moiety. Angew. Chem. Int. Ed. 48, 7040–7043 (2009).

    CAS  Google Scholar 

  111. Fernandes, P. A. & Ramos, M. J. Theoretical insights into the mechanism for thiol/disulfide exchange. Chemistry 10, 257–266 (2004).

    CAS  PubMed  Google Scholar 

  112. Koti Ainavarapu, S. R., Wiita, A. P., Dougan, L., Uggerud, E. & Fernandez, J. M. Single-molecule force spectroscopy measurements of bond elongation during a bimolecular reaction. J. Am. Chem. Soc. 130, 6479–6487 (2008).

    PubMed  Google Scholar 

  113. Li, W. & Grater, F. Atomistic evidence of how force dynamically regulates thiol/disulfide exchange. J. Am. Chem. Soc. 132, 16790–16795 (2010).

    CAS  PubMed  Google Scholar 

  114. Liang, J. & Fernandez, J. M. Kinetic measurements on single-molecule disulfide bond cleavage. J. Am. Chem. Soc. 133, 3528–3534 (2011).

    CAS  PubMed  PubMed Central  Google Scholar 

  115. Eyring, H. The activated complex in chemical reactions. J. Chem. Phys. 3, 107–115 (1935).

    CAS  Google Scholar 

  116. Wiita, A. P. et al. Probing the chemistry of thioredoxin catalysis with force. Nature 450, 124–127 (2007).

    CAS  PubMed  PubMed Central  Google Scholar 

  117. Perez-Jimenez, R. et al. Diversity of chemical mechanisms in thioredoxin catalysis revealed by single-molecule force spectroscopy. Nat. Struct. Mol. Biol. 16, 890–896 (2009).

    CAS  PubMed  PubMed Central  Google Scholar 

  118. Garcia-Manyes, S., Liang, J., Szoszkiewicz, R., Kuo, T. L. & Fernandez, J. M. Force-activated reactivity switch in a bimolecular chemical reaction. Nat. Chem. 1, 236–242 (2009).

    CAS  PubMed  Google Scholar 

  119. Dopieralski, P. et al. The Janus-faced role of external forces in mechanochemical disulfide bond cleavage. Nat. Chem. 5, 685–691 (2013).

    CAS  PubMed  Google Scholar 

  120. Beyer, M. K. The mechanical strength of a covalent bond calculated by density functional theory. J. Chem. Phys. 112, 7307–7312 (2000).

    CAS  Google Scholar 

  121. Iozzi, M. F., Helgaker, T. & Uggerud, E. Influence of external force on properties and reactivity of disulfide bonds. J. Phys. Chem. A 115, 2308–2315 (2011).

    CAS  PubMed  Google Scholar 

  122. Baldus, I. B. & Grater, F. Mechanical force can fine-tune redox potentials of disulfide bonds. Biophys. J. 102, 622–629 (2012).

    CAS  PubMed  PubMed Central  Google Scholar 

  123. Hofbauer, F. & Frank, I. Disulfide bond cleavage: a redox reaction without electron transfer. Chemistry 16, 5097–5101 (2010).

    CAS  PubMed  Google Scholar 

  124. Iannuzzi, M., Laio, A. & Parrinello, M. Efficient exploration of reactive potential energy surfaces using Car–Parrinello molecular dynamics. Phys. Rev. Lett. 90, 238302 (2003).

    PubMed  Google Scholar 

  125. Dopieralski, P., Ribas-Arino, J., Anjukandi, P., Krupicka, M. & Marx, D. Unexpected mechanochemical complexity in the mechanistic scenarios of disulfide bond reduction in alkaline solution. Nat. Chem. 9, 164–170 (2017).

    CAS  PubMed  Google Scholar 

  126. Dopieralski, P., Ribas-Arino, J., Anjukandi, P., Krupicka, M. & Marx, D. Force-induced reversal of β-eliminations: stressed disulfide bonds in alkaline solution. Angew. Chem. Int. Ed. 55, 1304–1308 (2016).

    CAS  Google Scholar 

  127. Alegre-Cebollada, J., Kosuri, P., Rivas-Pardo, J. A. & Fernandez, J. M. Direct observation of disulfide isomerization in a single protein. Nat. Chem. 3, 882–887 (2011).

    CAS  PubMed  PubMed Central  Google Scholar 

  128. Kosuri, P. et al. Protein folding drives disulfide formation. Cell 151, 794–806 (2012).

    CAS  PubMed  PubMed Central  Google Scholar 

  129. Sevier, C. S. & Kaiser, C. A. Formation and transfer of disulphide bonds in living cells. Nat. Rev. Mol. Cell Biol. 3, 836–847 (2002).

    CAS  PubMed  Google Scholar 

  130. Wilkinson, B. & Gilbert, H. F. Protein disulfide isomerase. Biochim. Biophys. Acta 1699, 35–44 (2004).

    CAS  PubMed  Google Scholar 

  131. Kadokura, H., Tian, H., Zander, T., Bardwell, J. C. & Beckwith, J. Snapshots of DsbA in action: detection of proteins in the process of oxidative folding. Science 303, 534–537 (2004).

    CAS  PubMed  Google Scholar 

  132. Kahn, T. B., Fernandez, J. M., Perez-Jimenez, R. Monitoring oxidative folding of a single protein catalyzed by the disulfide oxidoreductase DsbA. J. Biol. Chem. 290, 14518–14527 (2015).

    CAS  PubMed  PubMed Central  Google Scholar 

  133. Gupta, V. & Carroll, K. S. Sulfenic acid chemistry, detection and cellular lifetime. Biochim. Biophys. Acta 1840, 847–875 (2014).

    CAS  PubMed  Google Scholar 

  134. Beedle, A. E., Lynham, S. & Garcia-Manyes, S. Protein S-sulfenylation is a fleeting molecular switch that regulates non-enzymatic oxidative folding. Nat. Commun. 7, 12490 (2016).

    CAS  PubMed  PubMed Central  Google Scholar 

  135. Beedle, A. E. M., Mora, M., Lynham, S., Stirnemann, G. & Garcia-Manyes, S. Tailoring protein nanomechanics with chemical reactivity. Nat. Commun. 8, 15658 (2017).

    CAS  PubMed  PubMed Central  Google Scholar 

  136. Alegre-Cebollada, J. et al. S-Glutathionylation of cryptic cysteines enhances titin elasticity by blocking protein folding. Cell 156, 1235–1246 (2014).

    CAS  PubMed  PubMed Central  Google Scholar 

  137. Vogel, V. Mechanotransduction involving multimodular proteins: converting force into biochemical signals. Annu. Rev. Biophys. Biomol. Struct. 35, 459–488 (2006).

    CAS  PubMed  Google Scholar 

  138. Eisenstein, M. Mechanobiology: a measure of molecular muscle. Nature 544, 255–257 (2017).

    CAS  PubMed  Google Scholar 

  139. Puchner, E. M. & Gaub, H. E. Single-molecule mechanoenzymatics. Annu. Rev. Biophys. 41, 497–518 (2012).

    CAS  PubMed  Google Scholar 

  140. Valle-Orero, J. et al. Mechanical deformation accelerates protein ageing. Angew. Chem. Int. Ed. 56, 9741–9746 (2017).

    CAS  Google Scholar 

  141. Mayans, O. et al. Structural basis for activation of the titin kinase domain during myofibrillogenesis. Nature 395, 863–869 (1998).

    CAS  PubMed  Google Scholar 

  142. Grater, F., Shen, J., Jiang, H., Gautel, M. & Grubmuller, H. Mechanically induced titin kinase activation studied by force-probe molecular dynamics simulations. Biophys. J. 88, 790–804 (2005).

    PubMed  Google Scholar 

  143. Puchner, E. M. et al. Mechanoenzymatics of titin kinase. Proc. Natl Acad. Sci. USA 105, 13385–13390 (2008).

    CAS  PubMed  PubMed Central  Google Scholar 

  144. Zhang, X., Halvorsen, K., Zhang, C. Z., Wong, W. P. & Springer, T. A. Mechanoenzymatic cleavage of the ultralarge vascular protein von Willebrand factor. Science 324, 1330–1334 (2009).

    CAS  PubMed  PubMed Central  Google Scholar 

  145. del Rio, A. et al. Stretching single talin rod molecules activates vinculin binding. Science 323, 638–641 (2009).

    CAS  PubMed  Google Scholar 

  146. Yao, M. et al. Mechanical activation of vinculin binding to talin locks talin in an unfolded conformation. Sci. Rep. 4, 4610 (2014).

    PubMed  PubMed Central  Google Scholar 

  147. Yao, M. et al. Force-dependent conformational switch of α-catenin controls vinculin binding. Nat. Commun. 5, 4525 (2014).

    CAS  PubMed  Google Scholar 

  148. Sawada, Y. et al. Force sensing by mechanical extension of the Src family kinase substrate p130Cas. Cell 127, 1015–1026 (2006).

    CAS  PubMed  PubMed Central  Google Scholar 

  149. Guilluy, C. et al. Isolated nuclei adapt to force and reveal a mechanotransduction pathway in the nucleus. Nat. Cell Biol. 16, 376–381 (2014).

    CAS  PubMed  PubMed Central  Google Scholar 

  150. Swift, J. et al. Nuclear lamin-A scales with tissue stiffness and enhances matrix-directed differentiation. Science 341, 1240104 (2013).

    PubMed  PubMed Central  Google Scholar 

  151. Popa, I. et al. Nanomechanics of HaloTag tethers. J. Am. Chem. Soc. 135, 12762–12771 (2013).

    CAS  PubMed  Google Scholar 

  152. Popa, I. et al. HaloTag anchored ruler for week-long studies of protein dynamics. J. Am. Chem. Soc. 138, 10546–10553 (2016).

    CAS  PubMed  PubMed Central  Google Scholar 

  153. Pernigo, S. et al. Structural insight into M-band assembly and mechanics from the titin-obscurin-like-1 complex. Proc. Natl Acad. Sci. USA 107, 2908–2913 (2010).

    CAS  PubMed  PubMed Central  Google Scholar 

  154. Kim, J., Zhang, C. Z., Zhang, X. & Springer, T. A. A mechanically stabilized receptor-ligand flex-bond important in the vasculature. Nature 466, 992–995 (2010).

    CAS  PubMed  PubMed Central  Google Scholar 

  155. Pernigo, S. et al. Binding of myomesin to obscurin-like-1 at the muscle M-band provides a strategy for isoform-specific mechanical protection. Structure 25, 107–120 (2017).

    CAS  PubMed  PubMed Central  Google Scholar 

  156. Echelman, D. J., Lee, A. Q. & Fernandez, J. M. Mechanical forces regulate the reactivity of a thioester bond in a bacterial adhesin. J. Biol. Chem. 292, 8988–8997 (2017).

    CAS  PubMed  PubMed Central  Google Scholar 

  157. Allen, M. P. & Tildesley, D. J. (eds) Computer Simulation in Chemical Physics (Springer, 1993).

    Google Scholar 

  158. Frenkel, D. & Smit, B. Understanding Molecular Simulation: from Algorithms to Applications 2nd edn (Academic Press, 2002).

    Google Scholar 

  159. Austen, K. et al. Extracellular rigidity sensing by talin isoform-specific mechanical linkages. Nat. Cell Biol. 17, 1597–1606 (2015).

    CAS  PubMed  PubMed Central  Google Scholar 

  160. Chowdhury, F. et al. Defining single molecular forces required for notch activation using nano yoyo. Nano Lett. 16, 3892–3897 (2016).

    CAS  PubMed  PubMed Central  Google Scholar 

  161. Xu, B. Q., Xiao, X. Y. & Tao, N. J. Measurements of single-molecule electromechanical properties. J. Am. Chem. Soc. 125, 16164–16165 (2003).

    CAS  PubMed  Google Scholar 

  162. Xu, B. Q., Li, X. L., Xiao, X. Y., Sakaguchi, H. & Tao, N. J. Electromechanical and conductance switching properties of single oligothiophene molecules. Nano Lett. 5, 1491–1495 (2005).

    CAS  PubMed  Google Scholar 

  163. Frei, M., Aradhya, S. V., Koentopp, M., Hybertsen, M. S. & Venkataraman, L. Mechanics and chemistry: single molecule bond rupture forces correlate with molecular backbone structure. Nano Lett. 11, 1518–1523 (2011).

    CAS  PubMed  Google Scholar 

  164. Marszalek, P. E., Greenleaf, W. J., Li, H., Oberhauser, A. F. & Fernandez, J. M. Atomic force microscopy captures quantized plastic deformation in gold nanowires. Proc. Natl Acad. Sci. USA 97, 6282–6286 (2000).

    CAS  PubMed  PubMed Central  Google Scholar 

  165. Sotomayor, M. & Schulten, K. Single-molecule experiments in vitro and in silico. Science 316, 1144–1148 (2007).

    CAS  PubMed  Google Scholar 

Download references

Acknowledgements

The authors apologize to the many colleagues whose work could not be cited owing to space constraints. A.E.M.B. thanks the Engineering and Physical Sciences Research Council (EPSRC) for funding through an EPSRC DTP fellowship. This work was supported by a Marie Curie Career Integration Grant (No. 293462), a Biotechnology and Biological Sciences Research Council grant (No. J00992X/1), a Royal Society Research grant (No. RG120038), a British Heart Foundation grant (No. PG/13/50/30426), an EPSRC Fellowship (No. K00641X/1) and a Leverhulme Trust Research Leadership Award, all to S.G.-M.

Author information

Authors and Affiliations

Authors

Contributions

Both authors researched data for the article and contributed to discussion of content. A.E.M.B. wrote part of the covalent mechanochemistry section, and S.G.-M. wrote the rest of the article. Both authors reviewed and edited the manuscript.

Corresponding author

Correspondence to Sergi Garcia-Manyes.

Ethics declarations

Competing interests

The authors declare no competing interests.

PowerPoint slides

Glossary

Amylose

A homopolymer of α-D-glucopyranose rings in which C1 is bonded to C4 on the consecutive ring through a glycosidic bond.

Dextran

A homopolymer formed by glycosidic bonds linking C1 and C6 of consecutive α-D-glucopyranose rings.

Freely jointed chain (FJC) model

A model that describes the behaviour of a semi-flexible polymer composed of rigid and inextensible segments, which are free to rotate at any angle with no correlation between the directions of the neighbouring segments. Under purely thermal control, the polymer will reside in a maximum entropy random configuration. As mechanical force is applied, the polymer stretches against an entropic force resulting from the reduced number of available conformations under force.

Worm-like chain (WLC) model

An extension of the freely jointed chain model that takes into account the energetic costs for bending the polymer chain. Single-molecule nanomechanical techniques are best suited for characterizing the force-dependent stretching behaviour of various polymers.

Woodward–Hoffmann–DePuy (WHD) rule

A rule describing the conservation of orbital symmetry for reactions that have a transition state with cyclic geometry.

Ligand K-edge X-ray absorption spectroscopy

An experimental technique that can be used to investigate the degree of covalency of a metal–ligand bond. The K-edge of the absorption spectra is generated by the excitation of the ligand 1s electron to an empty p orbital, providing information on the atomic arrangement at the active site of a metalloprotein.

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Garcia-Manyes, S., Beedle, A. Steering chemical reactions with force. Nat Rev Chem 1, 0083 (2017). https://doi.org/10.1038/s41570-017-0083

Download citation

  • Published:

  • DOI: https://doi.org/10.1038/s41570-017-0083

This article is cited by

Search

Quick links

Nature Briefing

Sign up for the Nature Briefing newsletter — what matters in science, free to your inbox daily.

Get the most important science stories of the day, free in your inbox. Sign up for Nature Briefing