Abstract
The overall goal of a process chemistry department within the pharmaceutical industry is to identify and develop a commercially viable approach to a drug candidate. However, the high chemical complexity of many modern pharmaceuticals presents a challenge to process scientists. Delivering disruptive, rather than incremental, change is critical to maximizing synthetic efficiency in complex settings. In this Review, we focus on the importance of synthetic strategy in delivering ‘disruptive innovation’ — innovation that delivers a step change in synthetic efficiency using new chemistry, displacing any prior synthetic route. We argue that achieving this goal requires visionary retrosynthetic strategy and is tightly linked to the discovery and development of new reactions and novel processes. Investing in high-risk innovation during the route design process can ultimately lead to safer, more robust and more efficient manufacturing processes capable of addressing the challenge of high molecular complexity. Routinely delivering such innovation in a time-bound environment requires organizational focus and can be enabled by the concepts of expansive ideation, strategy aggregation and strategy selection.
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References
Anderson, N. G. Practical Process Research and Development (Academic Press, 2000).
Li, J. & Eastgate, M. D. Current complexity: a tool for assessing the complexity or organic molecules. Org. Biomol. Chem. 13, 7164–7176 (2015).
Chase, C. E. et al. Process development of Halaven®: synthesis of the C1–C13 fragment from d-(−)-gulono-1,4-lactone. Synlett 24, 323–326 (2013).
Austad, B. C. et al. Process development of Halaven®: synthesis of the C14–C35 fragment via iterative Nozaki–Hiyama–Kishi reaction–Williamson ether cyclization. Synlett 24, 327–332 (2013).
Austad, B. C. et al. Commercial manufacture of Halaven®: chemoselective transformation en route to structurally complex macrocyclic ketones. Synlett 24, 333–337 (2013).
Stinson, S. C. Chemistry 2020: a myopic vision? Chem. Eng. News 75, 28 (1997).
Stinson, S. C. Counting on chiral drugs. Chem. Eng. News 76, 83–104 (1998).
Mullin, R. Breaking down barriers. Chem. Eng. News 85, 11–17 (2007).
Christensen, C. M. The Innovator's Dilemma: When New Technologies Cause Great Firms to Fail (Harvard Business School Press, 1997).
Li, J., Simmons, E. M. & Eastgate, M. D. A data-driven strategy for predicting greenness scores, rationally comparing synthetic routes and benchmarking PMI outcomes for the synthesis of molecules in the pharmaceutical industry. Green Chem. 19, 127–139 (2017).
Kola, I. & Landis, J. Can the pharmaceutical industry reduce attrition rates? Nat. Rev. Drug Discov. 3, 711–715 (2004).
Fitzgerald, M. A. et al. Functionalization in the formation of a complex heterocycle: synthesis of the potent JAK2 inhibitor BMS-911543. J. Org. Chem. 80, 6001–6011 (2015).
Chen, K., Eastgate, M. D., Zheng, B. & Li, J. The development of scalable and efficient methods for the preparation of dicyclopropylamine HCl salt. Org. Process Res. Dev. 15, 886–892 (2011).
Mudryk, B., Zheng, B., Chen, K. & Eastgate, M. D. Development of a robust process for the preparation of high-quality dicyclopropylamine hydrochloride. Org. Process Res. Dev. 18, 520–527 (2014).
Schmidt, M. A. & Eastgate, M. D. Regioselective synthesis of 1,4-disubstituted imidazoles. Org. Biomol. Chem. 10, 1079–1087 (2012).
Beutner, G. L. et al. A method for heteroaromatic nitration demonstrating remarkable thermal stability. Org. Process Res. Dev. 18, 1812–1820 (2014).
Gallagher, W. P., Deshpande, P. P., Li, J. & Katipally, K. Method for producing festinavir using 5-methyluridine as a starting material. WO patent 2014172264 (2014).
Gallagher, W. P., Deshpande, P. P., Li, J., Katipally, K. & Sausker, J. A Claisen approach to 4′-Ed4T. Org. Lett. 17, 14–17 (2015).
Ortiz, A. et al. Scalable synthesis of the potent HIV inhibitor BMS-986001 by non-enzymatic dynamic kinetic asymmetric transformation (DYKAT). Angew. Chem. Int. Ed. 54, 7185–7188 (2015).
Benkovics, T., Ortiz, A., Guo, Z., Goswami, A. & Deshpande, P. Enantioselective preparation of (S)-5-oxo-5,6-dihydro-2H-pyran-2-yl benzoate. Org. Synth. 91, 293–306 (2014).
Ji, Y. et al. Mechanistic insights into the vanadium-catalyzed Achmatowicz rearrangement of furfurol. J. Org. Chem. 80, 1696–1702 (2015).
Chen, K., Risatti, C. & Eastgate, M. in Strategies and Tactics in Organic Synthesis Vol. 11 (ed. Harmata, M. ) 171–233 (Elsevier, 2015).
Wengryniuk, S. E. et al. Regioselective bromination of fused heterocyclic N-oxides. Org. Lett. 15, 792–795 (2013).
Chen, K. et al. Synthesis of the 6-azaindole containing HIV-1 attachment inhibitor pro-drug, BMS-663068. J. Org. Chem. 79, 8757–8767 (2014).
Tran, K. et al. Development of a diastereoselective phosphorylation of a complex nucleoside via dynamic kinetic resolution. J. Org. Chem. 80, 4994–5003 (2015).
Uchiyama, M., Aso, Y., Noyori, R. & Hayakawa, Y. O-Selective phosphorylation of nucleosides without N-protection. J. Org. Chem. 58, 373–379 (1993).
Chamberlain, S., Igo, D., Bis, J. & Sukumar, S. Crystalline solvates of nucleoside phosphoroamidates, their stereoselective preparation, novel intermediates thereof, and their use in the treatment of viral disease. WO patent 2013066991 (2013).
Goldberg, S. L. et al. Preparation of β-hydroxy-α-amino acid using recombinant d-threonine aldolase. Org. Process Res. Dev. 19, 1308–1316 (2015).
Schmidt, M. A. et al. Development of a two-step, enantioselective synthesis of an amino alcohol drug candidate. Org. Process Res. Dev. 19, 1317–1322 (2015).
Bartolozzi, A. et al. Oxadiazole inhibitors of leukotriene production. WO patent 2012024150 (2012).
Marek, Y. et al. All-carbon quaternary stereogenic centers in acyclic systems through the creation of several C–C Bonds per chemical step. J. Am. Chem. Soc. 136, 2682–2694 (2014).
Zeng, X. et al. Remarkable enhancement of enantioselectivity in the asymmetric conjugate addition of dimethylzinc to (Z)-nitroalkenes with a catalytic [(MeCN)4Cu]PF6–Hoveyda Ligand complex. Angew. Chem. Int. Ed. 53, 12153–12157 (2014).
Stymiest, J. L., Bagutski, V., French, R. M. & Aggarwal, V. K. Enantiodivergent conversion of chiral secondary alcohols into tertiary alcohols. Nature 456, 778–782 (2008).
Bagutski, V., Ros, A. & Aggarwal, V. K. Improved method for the conversion of pinacolboronic esters into trifluoroborate salts: facile synthesis of chiral secondary and tertiary trifluoroborates. Tetrahedron 65, 9956–9960 (2009).
Bagutski, V., French, R. M. & Aggarwal, V. K. Full chirality transfer in the conversion of secondary alcohols into tertiary boronic esters and alcohols using lithiation–borylation reactions. Angew. Chem. Int. Ed. 49, 5142–5145 (2010).
Sonawane, R. P. et al. Enantioselective construction of quaternary stereogenic centers from tertiary boronic esters: methodology and applications. Angew. Chem. Int. Ed. 50, 3760–3763 (2011).
Rangaishenvi, M. V., Singaram, B. & Brown, H. C. Chiral synthesis via organoboranes. 30. Facile synthesis, by the Matteson asymmetric homologation procedure, of α-methyl boronic acids not available from asymmetric hydroboration and their conversion into the corresponding aldehydes, ketones, carboxylic acids and amines of high enantiomeric purity. J. Org. Chem. 56, 3286–3294 (1991).
Scott, H. K. & Aggarwal, V. K. Highly enantioselective synthesis of tertiary boronic esters and their stereospecific conversion to other functional groups and quaternary stereocentres. Chem. Eur. J. 17, 13124–13132 (2011).
Senanayake, C. H. & Krishnamurthy, D. Asymmetric synthesis for process research. Curr. Opin. Drug Discov. Dev. 2, 590–605 (1999).
Farina, V., Reeves, J. T., Senanayake, C. H. & Song, J. J. Asymmetric synthesis of active pharmaceutical ingredients. Chem. Rev. 106, 2734–2793 (2006).
Hoppe, D., Hintze, F. & Tebben, P. Chiral lithium-1-oxyalkanides by asymmetric seprotonation; enantioselective synthesis of 2-hydroalkanoic acids and secondary alkanols. Angew. Chem. Int. Ed. Engl. 29, 1422–1424 (1990).
Hoppe, D. & Hense, T. Enantioselective synthesis with lithium/(−)-sparteine carbanion pairs. Angew. Chem. Int. Ed. Engl. 36, 2282–2316 (1997).
Matteson, D. S., Soundararajan, R., Ho, O. C. & Gatzweiler, W. (Alkoxyalkyl)boronic ester intermediates for asymmetric synthesis. Organometallics 15, 152–163 (1996).
Fandrick, K. R. et al. Addressing the configuration stability of lithiated secondary benzylic carbamates for the development of a noncryogenic stereospecific boronate rearrangement. Org. Lett. 16, 4360–4363 (2014).
Fandrick, K. R. et al. Development of an asymmetric synthesis of a chiral quaternary FLAP inhibitor. J. Org. Chem. 80, 1651–1660 (2015).
Fandrick, K. R., Gao, J. J., Mulder, J. A., Patel, N. D. & Zheng, X. Process for the preparation of carboxamidine compounds. WO Patent 2013119751 (2013).
Munchhof, M. J. et al. Discovery of PF-04449913, a potent and orally bioavailable inhibitor of smoothened. ACS Med. Chem. Lett. 3, 106–111 (2012).
Gillard, J. et al. Preparation of (2S,4R)-4-hydroxypipecolic acid and derivatives. J. Org. Chem. 61, 2226–2231 (1996).
Peng, Z., Wong, J. W., Hansen, E. C., Puchlopek-Dermenci, A. L. A. & Clarke, H. J. Development of a concise, asymmetric synthesis of a smoothened receptor (SMO) inhibitor: enzymatic transamination of a 4-piperidinone with dynamic kinetic resolution. Org. Lett. 16, 860–863 (2014).
Wiss, J., Fleury, C. & Onken, U. Safety improvement of chemical processes involving azides by online monitoring of the hydrazoic acid concentration. Org. Process Res. Dev. 10, 349–353 (2006). Azide processes and, in particular, the formation of hydrazoic acid are an important safety concern for large-scale synthesis.
Wells, A. What is in a biocatalyst? Org. Process Res. Dev. 10, 678–681 (2006).
Wells, A. S., Finch, G. L., Michels, P. C. & Wong, J. W. Use of enzymes in the manufacture of active pharmaceutical ingredients — a science and safety-based approach to ensure patient safety and drug quality. Org. Process Res. Dev. 16, 1968–1993 (2012).
Wells, A. S. et al. Case studies illustrating a science and risk-based approach to ensuring drug quality when using enzymes in the manufacture of active pharmaceuticals ingredients for oral dosage form. Org. Process Res. Dev. 20, 594–601 (2016).
Saville, C. K. et al. Biocatalytic asymmetric synthesis of chiral amines from ketones applied to sitagliptin manufacture. Science 329, 305–309 (2010). This paper offers a notable example of the use of a transaminase in the manufacture of sitagliptin.
Bravo, F. et al. Development of a dynamic kinetic resolution for the isolation of an intermediate in the synthesis of casopitant mesylate: application of QbD principles in the definition of the parameter ranges, issues in the scale-up and mitigation strategies. Org. Process Res. Dev. 14, 1162–1168 (2010).
Acknowledgements
The authors thank all of the collaborators and researchers who have worked on these fascinating molecules during their development. M.D.E. and M.A.S. are especially grateful to P. Baran for insightful discussions and inspiration, along with S. Tummala, R. Waltermire, A. Ortiz and C. Guerrero for helpful discussions.
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Glossary
- Ideation
-
Ensuring the robust and expansive evaluation of all key strategic bonds, developing a much fuller retrosynthetic analysis before entering the lab, and using the collective wisdom of multiple researchers to raise and address concerns.
- Strategy aggregation
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Taking the multiple synthetic proposals, or proposed disconnections, and collating them into clusters of aligned core disconnection strategies or reactivities, not focusing on any individual technology or precedent. Key experiments can rapidly be explored in the lab to assist in the triaging of strategies.
- Strategy selection
-
Aligning the team on selecting a strategy, not an individual synthesis proposal. The selected strategy should have multiple related synthetic options (for example, shared reactivity patterns or common intermediates) such that high-risk disruptive approaches can be investigated, while data gained from the exploration can be applied to lower-risk proposals. Appropriate selection can also lead to a more effective staged approach to synthesis development, which is often crucial in aligning work to the risk of the drug progressing to market.
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Eastgate, M., Schmidt, M. & Fandrick, K. On the design of complex drug candidate syntheses in the pharmaceutical industry. Nat Rev Chem 1, 0016 (2017). https://doi.org/10.1038/s41570-017-0016
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DOI: https://doi.org/10.1038/s41570-017-0016
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