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Guiding self-organized pattern formation in cell polarity establishment

Nature Physics volume 15, pages 293–300 (2019)Cite this article

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Abstract

Spontaneous pattern formation in Turing systems relies on feedback. But patterns in cells and tissues seldom form spontaneously—instead they are controlled by regulatory biochemical interactions that provide molecular guiding cues. The relationship between these guiding cues and feedback in controlled biological pattern formation remains unclear. Here, we explore this relationship during cell-polarity establishment in the one-cell-stage Caenorhabditis elegans embryo. We quantify the strength of two feedback systems that operate during polarity establishment: feedback between polarity proteins and the actomyosin cortex, and mutual antagonism among polarity proteins. We characterize how these feedback systems are modulated by guiding cues from the centrosome, an organelle regulating cell cycle progression. By coupling a mass-conserved Turing-like reaction–diffusion system for polarity proteins to an active-gel description of the actomyosin cortex, we reveal a transition point beyond which feedback ensures self-organized polarization, even when cues are removed. Notably, the system switches from a guide-dominated to a feedback-dominated regime well beyond this transition point, which ensures robustness. Together, these results reveal a general criterion for controlling biological pattern-forming systems: feedback remains subcritical to avoid unstable behaviour, and molecular guiding cues drive the system beyond a transition point for pattern formation.

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Fig. 1: Mechanochemical feedback in PAR polarity establishment.
Fig. 2: Isolating both guiding cues by RNAi and determining their spatiotemporal profiles.
Fig. 3: Predicting PAR and myosin dynamics in the presence of guiding cues and feedback structures.
Fig. 4: Handover from cue-driven to mechanochemically self-organized dynamics.
Fig. 5: Robust PAR polarization breaks down close to the transition point.

Data availability

All data generated or analysed in this study are available from the corresponding author upon request.

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Acknowledgements

P.G. acknowledges a EMBO Long-Term Fellowship for funding. The research of K.V.K. is supported by the Department of Biotechnology, India through a Ramalingaswami Re-entry Fellowship, and the Max Planck Society and the Department of Science and Technology, India through a Max Planck Partner Group at ICTS-TIFR. N.W.G. was supported by the Francis Crick Institute, which receives its core funding from Cancer Research UK (FC001086), the UK Medical Research Council (FC001086) and the Wellcome Trust (FC001086), and is a member of the GENiE network supported by COST Action BM1408 and EMBO. S.W.G was supported by the DFG (SPP 1782, GSC 97, GR 3271/2, GR 3271/3, GR 3271/4), the European Research Council (grants 281903 and 742712), ITN grants 281903 and 641639 from the EU, the Max-Planck-Society as a Max-Planck-Fellow, and the Human Frontier Science Program (RGP0023/2014). J.S.B. acknowledges the Human Frontier Science Program for funding. We thank D. Dickinson, B. Goldstein, F. Motegi and G. Seydoux for sharing C. elegans strains. We thank P. Gönczy, L. Hubatsch, T. Hyman, K. Kruse and M. Labouesse for discussion and insightful comments on the manuscript.

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Author notes

  1. These authors contributed equally: Peter Gross, K. Vijay Kumar.

Authors and Affiliations

  1. BIOTEC, TU Dresden, Dresden, Germany

    Peter Gross & Stephan W. Grill

  2. Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany

    Peter Gross, Carsten Hoege & Stephan W. Grill

  3. Max Planck Institute for the Physics of Complex Systems, Dresden, Germany

    Peter Gross, K. Vijay Kumar, Frank Jülicher & Stephan W. Grill

  4. International Centre for Theoretical Sciences, Tata Institute of Fundamental Research, Bengaluru, India

    K. Vijay Kumar

  5. The Francis Crick Institute, London, UK

    Nathan W. Goehring

  6. Medical Research Council Laboratory for Molecular Cell Biology, University College London, London, UK

    Nathan W. Goehring

  7. California Institute of Technology, Pasadena, CA, USA

    Justin S. Bois

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Contributions

P.G. performed experiments and K.V.K. developed the theory, with help from all authors. Data were analysed together with input from all authors. P.G., K.V.K., F.J. and S.W.G. wrote the manuscript.

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Correspondence to Stephan W. Grill.

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Supplementary information

Supplementary Information

Supplementary Discussion, Supplementary Equations, Supplementary Figures 1–15, Supplementary Tables 1–4, Supplementary References 1–27

Reporting Summary

Supplementary Video 1

Concentration field of PAR-2::GFP (blue, N = 8) and PAR-6::mCherry (red, N = 8), during mlc-4 RNAi, over time. Error bands represent the standard error of the mean. The solid line shows the best fit, using equations as described in Supplementary Table 1, with parameters shown in Supplementary Tables 2 and 3.

Supplementary Video 2

Ensemble-averaged concentration field of NMY-2::GFP (grey, N = 8) and the ensemble-averaged NMY-2 flow field (green, N = 10), during par-2 and par-6 double RNAi, over time. Error bands represent the standard error of the mean. The solid line shows the best fit, using equations as described in Supplementary Table 1, with parameters shown in Supplementary Tables 2 and 3.

Supplementary Video 3

Ensemble-averaged concentration field of PAR-2-MT-::GFP (blue, N = 9) and PAR-6::mCherry (red, N = 9) NMY-2::mKate2 (grey, N = 6) and the ensemble-averaged NMY-2 flow field (green, N = 9) for the PAR-2 MT- condition, over time. Error bands represent the standard error of the mean. The solid line shows the model prediction, using equations as described in Supplementary Table 1, with parameters shown in Supplementary Tables 2 and 3.

Supplementary Video 4

Ensemble-averaged concentration field of PAR-2::GFP (blue, N = 6) and PAR-6::mCherry (red, N = 6) NMY-2::GFP (grey, N = 8) and the ensemble-averaged NMY-2 flow field (green, N = 12) for the unperturbed condition, over time. Error bands represent the standard error of the mean. The solid line shows the model prediction, using equations as described in Supplementary Table 1, with parameters shown in Supplementary Tables 2 and 3.

Supplementary Video 5

Ensemble-averaged concentration field of PAR-2::GFP (blue, N = 6) and PAR-6::mCherry (red, N = 6) NMY-2::GFP (grey, N = 8) and the ensemble-averaged NMY-2 flow field (green, N = 12) for the unperturbed condition, over time. Error bands represent the standard error of the mean. The solid line shows a fit to the model, using equations as described in Supplementary Table 1, as shown in Supplementary Fig. 9

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Gross, P., Kumar, K.V., Goehring, N.W. et al. Guiding self-organized pattern formation in cell polarity establishment. Nat. Phys. 15, 293–300 (2019). https://doi.org/10.1038/s41567-018-0358-7

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