Keystone taxa indispensable for microbiome recovery

A Publisher Correction to this article was published on 02 September 2020

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Meta-analysis of four human cohort studies reveals specific keystone bacteria associated with gut microbiome recovery after antibiotic exposure.

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Fig. 1: Secondary succession following an ecological disturbance.

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  • 02 September 2020

    An amendment to this paper has been published and can be accessed via a link at the top of the paper.


  1. 1.

    Dethlefsen, L. & Relman, D. A. Proc. Natl Acad. Sci. USA 108 (Suppl. 1), 4554–4561 (2011).

    CAS  Article  Google Scholar 

  2. 2.

    Gibbons, S. M., Kearney, S. M., Smillie, C. S. & Alm, E. J. PLoS Comput. Biol. 13, e1005364 (2017).

    Article  Google Scholar 

  3. 3.

    Ng, K. M. et al. Cell Host Microbe 26, 650–665 (2019).

    CAS  Article  Google Scholar 

  4. 4.

    Suez, J. et al. Cell 174, 1406–1423 (2018).

    CAS  Article  Google Scholar 

  5. 5.

    Chng, K. R. et al. Nat. Ecol. Evol. https://doi.org/10.1038/s41559-020-1236-0 (2020).

  6. 6.

    Paine, R. T. Conserv. Biol. 9, 962–964 (1995).

    Article  Google Scholar 

  7. 7.

    Raymond, F. et al. ISME J. 10, 707–720 (2016).

    CAS  Article  Google Scholar 

  8. 8.

    Zaura, E. et al. mBio 6, e01693-15 (2015).

    Article  Google Scholar 

  9. 9.

    Duvallet, C., Gibbons, S. M., Gurry, T., Irizarry, R. A. & Alm, E. J. Nat. Commun. 8, 1784 (2017).

    Article  Google Scholar 

  10. 10.

    Horn, H. S. Annu. Rev. Ecol. Syst. 5, 25–37 (1974).

    Article  Google Scholar 

Download references


S.M.G. was supported by a Washington Research Foundation Distinguished Investigator Award and by start-up funds from the Institute for Systems Biology.

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Correspondence to Sean M. Gibbons.

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Gibbons, S.M. Keystone taxa indispensable for microbiome recovery. Nat Microbiol 5, 1067–1068 (2020). https://doi.org/10.1038/s41564-020-0783-0

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