Masked alkynes for synthesis of threaded carbon chains

Polyynes are chains of sp1 carbon atoms with alternating single and triple bonds. As they become longer, they evolve towards carbyne, the 1D allotrope of carbon, and they become increasingly unstable. It has been anticipated that long polyynes could be stabilized by supramolecular encapsulation, by threading them through macrocycles to form polyrotaxanes—but, until now, polyyne polyrotaxanes with many threaded macrocycles have been synthetically inaccessible. Here we show that masked alkynes, in which the C≡C triple bond is temporarily coordinated to cobalt, can be used to synthesize polyrotaxanes, up to the C68 [5]rotaxane with 34 contiguous triple bonds and four threaded macrocycles. This is the length regime at which the electronic properties of polyynes converge to those of carbyne. Cyclocarbons constitute a related family of molecular carbon allotropes, and cobalt-masked alkynes also provide a route to [3]catenanes and [5]catenanes built around cobalt complexes of cyclo[40]carbon and cyclo[80]carbon, respectively.

Polyynes are chains of sp 1 carbon atoms with alternating single and triple bonds.As they become longer, they evolve towards carbyne, the 1D allotrope of carbon, and they become increasingly unstable.It has been anticipated that long polyynes could be stabilized by supramolecular encapsulation, by threading them through macrocycles to form polyrotaxanes-but, until now, polyyne polyrotaxanes with many threaded macrocycles have been synthetically inaccessible.Here we show that masked alkynes, in which the C≡C triple bond is temporarily coordinated to cobalt, can be used to synthesize polyrotaxanes, up to the C 68 [5]rotaxane with 34 contiguous triple bonds and four threaded macrocycles.This is the length regime at which the electronic properties of polyynes converge to those of carbyne.Cyclocarbons constitute a related family of molecular carbon allotropes, and cobalt-masked alkynes also provide a route to [3]catenanes and [5]  catenanes built around cobalt complexes of cyclo [40]carbon and cyclo[80] carbon, respectively.
The synthesis of new carbon allotropes is a rapidly evolving field [1][2][3] that has already delivered technologically disruptive materials, such as fullerenes, carbon nanotubes and graphene.Recent advances include the synthesis of γ-graphyne 4,5 , covalent fullerene monolayers 6 , biphenylene networks 7 and cyclo [18]carbon 8 .Allotropes composed entirely of sp 1 two-coordinate carbon atoms, that is, carbyne and cyclo[n]carbons (the linear and cyclic forms, respectively), are under-explored as a consequence of their high reactivity.Linear chains of >50 carbon atoms have only been studied when encapsulated inside carbon nanotubes [9][10][11] , while structural studies of cyclocarbons have been limited to cryogenic temperatures 8,12,13 .Carbyne is predicted to be a 1D semiconductor 14 with outstanding tensile strength 15,16 and thermal conductivity 17 , and its properties have been deduced by extrapolation from experimental studies of monodisperse polyynes, which consist of chains of sp 1 -carbon atoms with bulky groups at both ends [18][19][20][21][22] .The longest previously reported polyynes of this type have chains of 48 sp 1 -carbon atoms 21 .These polyynes were synthesized using a strategy in which the final step is the oxidative Glaser of a fragile hydrogen-terminated polyyne intermediate, R-(C≡C) n -H, with half the length of the final product, R-(C≡C) 2n -R (Fig. 1a).There are four major drawbacks to this conventional strategy for polyyne synthesis: (1) the instability of the terminal polyyne intermediate limits the efficiency of the final Glaser reactions, (2) the stepwise synthesis of this terminal polyyne intermediate can be laborious, (3) the final Glaser coupling step can be accompanied by loss of acetylenic units, resulting in shorter polyyne by-products that are difficult to separate from the desired product 18,21 , and (4) the stabilizing effect of the endgroups diminishes dramatically with increasing chain length.Supramolecular encapsulation has previously been demonstrated to enhance the stability of polyyne dumbbells by threading them through macrocycles to form rotaxanes [23][24][25] .Polyyne [2]  rotaxanes can be synthesized using active metal templates [24][25][26][27][28][29][30][31] , but there has been no method available for threading more than two macrocycles onto a polyyne chain.In this Article, we show that masked alkyne equivalents (MAEs) 25,[30][31][32] provided an efficient route to polyynes (Fig. 1b).This approach is analogous to the 'precursor polymer' routes used for synthesizing conjugated polymers 33,34 .Two types of masked building blocks are required to construct long polyyne polyrotaxanes: one with two reactive termini and one with https://doi.org/10.1038/s41557-023-01374-zaround the central octatetrayne thread (for more information, see details in Supplementary Section 4).De-protection of 3•M a /M b with tetrabutylammonium fluoride (TBAF) gives the terminal alkynes 4•M a /M b in high yield, but Glaser coupling of these alkynes is inefficient, probably as a result of steric hinderance, so both compounds were extended by coupling with excess trimethylsilyl acetylene to give 5•M a /M b , and then treatment with potassium carbonate gave the bis-terminal alkynes 6•M a /M b .

Unmasking of polyrotaxanes
The unmasking of Co 2 (CO) 4 dppm-polyynes complexes has previously been achieved using iodine, although this reaction is inefficient and unreliable; for example, unmaking mC28•(M a ) 2 with iodine gave the tetradecayne [3]rotaxane C28•(M a ) 2 in a poorly reproducible yield of 20-36% (refs.25,32,46).After screening a range of oxidants, we found that meta-chloroperoxybenzoic acid (mCPBA) rapidly removes the Co 2 (CO) 4 dppm group.For example, treating [3]rotaxane mC28•(M b ) with mCPBA (ten equivalents) in CH 2 Cl 2 at 20 °C for 5 min gives the desired tetradecayne [3]rotaxane C28•(M b ) 2 in 74% yield.However, these reaction conditions are not compatible with the larger phenanthroline-based macrocycles M a , and mC28•(M a ) 2 reacts with mCPBA to give a complex mixture of products containing both the desired [3]rotaxane C28•(M a ) 2 and also the tetradecayne dumbbell C28 (which appears to be formed via cleavage of the M a macrocycle).Magnesium monoperoxyphthalate hexahydrate (MMPP) was tested as a milder oxidant and found to be very effective.Slow addition of MMPP (20 equivalents) in methanol to a solution of mC28•(M a ) 2 in CH 2 Cl 2 over 1.5-2 h gave C28•(M a ) 2 in 59% isolated yield.These mild conditions are also effective with the M b rotaxanes, giving C28•(M b ) in 64% yield.The discovery of this unmasking method encouraged us to pursue longer polyyne rotaxanes.After subjecting the [4]rotaxane mC48•(M b ) 3 to mCPBA and MMPP conditions (separately), we isolated the tetracosayne [4]rotaxane C48•(M b ) 3 in 43% and 25% yields, respectively, after purification on silica gel.This polyyne [4]rotaxane C48•(M b ) 3 is an orange-red solid, and it is stable for weeks at room temperature without decomposition, both in solution and in the solid state, as confirmed by monitoring with thin layer chromatography or ultraviolet-visible (UV-vis) spectroscopy.The [4]rotaxane C48•(M a ) 3 and the naked polyyne dumbbell C48 could be prepared from mC48•(M a ) 3 using MMPP (in 19% yield) and from mC48 using mCPBA (in 56% yield).
The thermal stability of C48•(M b ) 3 in the solid state, in the dark under air at 30 °C, was compared with that of the corresponding polyyne dumbbell C48 (for more information, see details in Fig. 4a and Supplementary Section 8).Both compounds decompose gradually a stopper at the end.We chose dicobalt tetracarbonyldiphenylphosphinomethane (Co 2 (CO) 4 dppm) as the masking group 32 , because it is bulky enough to act as a temporary stopper, to prevent unthreading of the macrocycles, and because it is unaffected by the reaction conditions of Glaser coupling.Here we show that these masked polyynes can be unmasked efficiently under mild conditions.This precursor polymer route circumvents all four of the drawbacks to the conventional route listed above, and it provides access to much longer polyynes than synthesized previously.

Synthesis of [2]rotaxane intermediates
The cobalt alkyne complex 1 (Fig. 2) was prepared as reported previously 25 .Standard bromination conditions (for example, NBS/AgNO 3 ) failed to convert 1 to the bromoalkyne 2, probably because they oxidize the Co 2 (CO) 4 dppm group.Fortunately, this transformation can be achieved by treating 1 with carbon tetrabromide in the presence of potassium carbonate and 18-crown-6 in tetrahydrofuran/methanol.Bromoalkyne 2 is not stable as a solid at room temperature, but it can be handled as a solution.Two phenanthroline-based macrocycles M a and M b were chosen for this study 35,36 .The larger macrocycle M a often gives higher yields of polyyne rotaxanes in active template coupling reactions [24][25][26][28][29][30] , whereas the smaller cavity of M b is expected to protect the threaded polyyne more effectively. Activ metal template Cadiot-Chodkiewicz coupling 37 of a mixture of 1 and 2 in the presence of the macrocycles gave the symmetric [2]rotaxanes 3•M a /M b (Fig. 2).The [2]rotaxanes 3•M a /M b can also be isolated as by-products from the synthesis of rotaxanes 7•M a /M b by Cadiot-Chodkiewicz coupling of a mixture of 1 and supertrityl bromotriyne (for details, see Supplementary Section 2).Single crystal X-ray diffraction studies [38][39][40][41][42][43] of rotaxanes 3•M a and 3•M b confirm that the macrocycle is threaded The classical approach to synthesize a polyyne preceded via a terminal polyyne with half as many carbon atoms in the chain [18][19][20][21][22] .b, In the precursor polymer route (this work), an MAE is used to conceal the reactivity of the alkynes until the whole backbone has been constructed.

Article
https://doi.org/10.1038/s41557-023-01374-zwith first-order kinetics, with a half-life of 1,022 h for C48•(M b ) 3 compared with 62 h for C48, which illustrates the substantial increase in stability conferred by supramolecular encapsulation.It is surprising that C48 decomposes so slowly in the solid state, even without any threaded macrocycles.The synthesis of the polyyne dumbbell C48 via mC48 illustrates the utility of MAEs in polyyne synthesis.The polyyne [4]rotaxanes C48•(M a ) 3 and C48•(M b ) 3 and dumbbell C48 were fully characterized by 1 H nuclear magnetic resonance (NMR), UV-vis and Raman spectroscopy and high-resolution mass spectrometry.We also recorded the 13 C NMR spectrum of [4]rotaxane C48•(M b ) 3 , and 19 out of the 24 sp-carbon resonances were resolved.The longest polyyne previously characterized by 13 C NMR has a chain of 44 sp-carbons and shows a convergence of the sp-carbon resonance at 63.7 ppm 20 .In the 13 C NMR spectrum of [4]rotaxane C48•(M b ) 3 , with 48 sp-carbons, an envelope of overlapping signals is observed in the region 63.6-63.8ppm (Fig. 4b), consistent with previous work.
Unmasking of the [5]rotaxane mC68•(M b ) 4 using MMPP (120 equivalents) gave the polyyne [5]rotaxane C68•(M b ) 4 in a 23% yield, after purification by silica gel chromatography and washing with ethanol, whereas this compound could not be prepared by unmasking mC68•(M b ) 4 with mCPBA.This polyyne [5]rotaxane is an orange-red solid, and it is stable in solution over several days on storing at −20 °C, but some decomposition is observed during chromatography.The C68 polyyne chain of this [5]rotaxane makes it longer than any previously reported polyyne 21 .It was fully characterized by 1 H NMR, UV-vis and Raman spectroscopy and high-resolution mass spectrometry.We also prepared C68•(M a ) 4 but this [5]rotaxane is less stable than the version with the smaller macrocycle, which prevented characterization by NMR spectroscopy.

UV-vis and Raman spectra
Polyynes exhibit characteristic electronic absorption bands, with sharp vibronic fine structure, which shift to longer wavelength as the length of the polyyne chain increases [19][20][21][22] .The absorption maxima (λ max ) of the polyyne dumbbells and polyyne rotaxanes synthesized in this study are summarized in Table 1.The presence of threaded macrocycles has little effect on the absorption spectra, and the λ max values of the naked polyyne dumbbells are similar to those of the corresponding polyyne rotaxanes, although the spectra of the rotaxanes are red-shifted by 3-9 nm, due to the different solvent environment around the threaded polyyne chain 24 , while the type of macrocycle (M a versus M b ) has no noticeable effect on the spectra.The variation in λ max with the number of triple bonds, n, is plotted in Fig. 4c   4 .These data fit well to the Meier equation 47 , equation (1), as reported by Chalifoux and Tykwinski for a series of shorter polyynes 20 , where λ ∞ , λ 1 and k are empirical parameters that reflect the λ max values at n = ∞ and 1, respectively, and the rate of saturation.The data for our polyrotaxanes give λ ∞ = 503 nm, λ 1 = 172 nm and k = 0.116.These values are similar to those deduced by Chalifoux and Tykwinski for their supertrityl polyynes (λ ∞ = 486 nm, λ 1 = 175 nm and k = 0.116) 20 .The Raman spectra of polyynes are dominated by an intense band at around 1,900-2,100 cm -1 , arising from in-phase stretching of the C≡C triple bonds, and the frequency of this vibration (ν) is sensitive to the degree of bond-length alternation in the polyyne chain 16,21,48 .The Raman frequencies of the polyyne dumbbells and rotaxanes are listed in Table 1, and plotted against the number of triple bonds, n, for the M b rotaxanes in Fig. 4c.The presence of a threaded macrocycle has a negligible effect on the Raman frequency.This contrasts with the situation when a polyyne is encapsulated inside a double-walled carbon nanotube, where the Raman frequency is governed by the chirality of the inner tube and reduces with decreasing inner tube diameter [9][10][11] .The reduction in frequency of 177 cm -1 from C12•M b (ν = 2,077 cm -1 ) to C68•(M b ) 4 (ν = 1,900 cm -1 ) reflects a reduction in bond-length alternation with elongation of the polyyne chain 48 .Fitting the Meier equation to the Raman frequencies plotted in Fig. 4c (that is, using

Synthesis of catenanes
Palladium-catalysed oxidative homocoupling of the bis-functional [2]rotaxane 6•M a yields a series of cyclic oligomers (Fig. 5), which can be separated by GPC.We isolated the masked cyclo [40]carbon [3]   x    yield).These catenanes were fully characterized by 1 H, 13 C and 31 P NMR spectroscopy, and analytical GPC, but none of these techniques provides definitive information on the number of repeat units.At first, attempts at recording matrix-assisted laser desorption/ionization time-of-flight mass spectra of these two cyclic oligomers were unsuccessful and we tentatively assumed that they were the [3] and [4]catenane.Fortunately, nanoelectrospray ionization (nESI) mass spectrometry gave intense well-resolved molecular ions for both compounds, proving that the larger structure is the [5]catenane, as shown by the excellent fit between the calculated and observed isotopomer pattern (Fig. 5c).Surprisingly, we were unable to detect any formation of the [4]catenane.Single crystals of the [3]catenane were grown by diffusion of cyclohexane vapour into a solution of mcC40•(M a ) 2 in tetrahydrofuran.Single crystal X-ray diffraction studies confirmed the interlocked structure (Fig. 5b).In the solid state, the catenane has C i symmetry, with half a molecule in the asymmetric unit.Both the diphenylphosphinomethane (dppm) units point towards the M a macrocycles, in contrast to the conformations adopted in the crystal structures of 3•M a (one dppm in and one out) and 3•M b (both dppm units out, that is, away from the M b macrocycle; Supplementary Section 4).These dppm complexes are conformationally dynamic in solution (in fast exchange by NMR at room temperature) 49 , and the arrangement in the solid state is probably influenced by crystal packing.Unmasking of these two catenanes was attempted using mCPBA in CH 2 Cl 2 at room temperature; however, this reaction gave a complex mixture of products.We have not yet attempted to synthesize catenanes derived from 3•M b , and it seems likely that a more bulky version of M b will be required to achieve the synthesis of a stable unmasked cyclocarbon catenane.

Conclusions
The results presented here reveal that Co 2 (CO) 4 dppm is an excellent masking group for the synthesis of long polyynes, and particularly polyyne polyrotaxanes, because it is stable to Glaser-type oxidative coupling conditions and it can be removed efficiently by peracid oxidants, such as mCPBA and MMPP.When synthesizing conjugated polymers, it is often desirable to use a 'precursor polymer route'.In this strategy, a non-conjugated precursor polymer is synthesized and then converted into the target conjugated polymer through an elimination step, so that the extended π-system is only revealed after construction of the covalent backbone 33,34 .The precursor route presented here (Fig. 1b) is advantageous, even for the synthesis of polyynes with no threaded macrocycles, as illustrated by the synthesis of C48 from mC48, because it avoids the need for a long terminal polyyne intermediates and it allows the polymer backbone to be created before unmasking the whole polyyne chain.The use of Co 2 (CO) 4 dppm masking groups is particularly attractive for the synthesis of polyyne polyrotaxanes, because these organometallic complexes act as temporary stoppers, to prevent the macrocycles from unthreading.We have demonstrated this chemistry by preparing long masked polyynes up to the [8]rotaxane mC128•(M b ) 7 , which is a precursor to a C 128 polyyne, but we have not yet prepared this compound on a sufficient scale to test its unmasking.The longest unmasked polyyne polyrotaxane that we have synthesized during this study is the [5] Wavelength (nm)   1) gives an λ ∞ = 503 nm and v ∞ = 1,900 cm -1 .The data are listed in Table 1.n is the number of C≡C triple bonds in the polyyne.

Fig. 1 |
Fig.1| Strategies for synthesizing long polyynes.a, The classical approach to synthesize a polyyne preceded via a terminal polyyne with half as many carbon atoms in the chain[18][19][20][21][22] .b, In the precursor polymer route (this work), an MAE is used to conceal the reactivity of the alkynes until the whole backbone has been constructed.

2 Fig. 2 |
Fig. 2 | Synthesis of [2]rotaxane building blocks 6•M a and 6•M b .Active metal template coupling of terminal butadiyne 1 and bromoalkyne 2 in the presence of macrocycle M a or M b was used to synthesize rotaxanes 3•M a and 3•M b , which were then converted into 6•M a and 6•M b .Asterisk indicates yield over two steps.
rotaxane C68•(M b ) 4 with 34 contiguous alkyne units.The UV-vis absorption maxima and Raman frequencies for the homologous series of oligomers C12•M b , C28•(M b ) 2 , C48•(M b ) 3 and C68•(M b ) 4 fit well to the Meier equation, indicating that an infinite carbyne chain would have an absorption maximum of λ ∞ = 503 nm, and a Raman frequency of ν ∞ = 1,900 cm -1 .These asymptotic values match closely with those for C68•(M b ) 4 (λ max = 496 nm; ν = 1,900 cm -1 ) showing that the spectroscopic behaviour has essentially saturated at this chain length.We have not yet fully explored the application of this chemistry to the synthesis of cyclocarbon catenanes, but we have demonstrated the synthesis of the masked [3]catenane mcC40•(M a ) 2 and [5]catenane mcC80•(M a ) 4 .

Fig. 4 |
Fig. 4 | Characterization of polyyne rotaxane C48•(M b ) 3 .a, Plot showing thermal decomposition of polyyne dumbbell C48 and polyyne rotaxane C48•(M b ) 3 in the solid state at 30 °C.Decomposition in the solid state was monitored by dissolving samples of C48 and C48•(M b ) 3 in CH 2 Cl 2 and measuring the absorbance at 471 and 480 nm, respectively.Data were fitted to a first-order decay model, A(t) = exp(-kt), with k = 0.011 h -1 and 0.00068 h -1 for C48 and C48•(M b ) 3 , respectively.b, A partial 13 C NMR spectrum of polyyne [4]rotaxane C48•(M b ) 3 showing selected sp-carbon chemical shifts (151 MHz, CD 2 Cl 2 , 298 K). c, A plot of absorption wavelength of the absorption maximum λ max and Raman shift ν as a function of molecular length in the M b series fitted to equation (1) gives an λ ∞ = 503 nm and v ∞ = 1,900 cm -1 .The data are listed in Table1.n is the number of C≡C triple bonds in the polyyne.

Table 1 | Absorption maxima wavelengths (λ max ) and peak Raman frequencies (ν) a
All data were measured in CH 2 Cl 2 at 25 °C, at concentrations of ~1 × 10 -5 M for UV-vis and 1 × 10 -3 M for Raman.Excitation wavelength of 1,064 nm, continuous-wave laser; spectral resolution of 4 cm −1 .https://doi.org/10.1038/s41557-023-01374-zif changes were made.The images or other third party material in this article are included in the article's Creative Commons license, unless indicated otherwise in a credit line to the material.If material is not included in the article's Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder.To view a copy of this license, visit http://creativecommons. org/licenses/by/4.0/.
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