Table 2 Top ten genera by relative abundance (ra) stratified by clinical state

From: Microbiome networks and change-point analysis reveal key community changes associated with cystic fibrosis pulmonary exacerbations

  Rank Genus Mean (%) Median (%) Stdev Prev. (%) Prev. rank Hub rank Metab.a
Baseline 1 Pseudomonas 41.289 46.880 36.709 92.5 7 5 +
2 Prevotella 12.537 6.257 15.089 100.0 1 4
3 Streptococcus 9.705 5.769 11.204 98.8 3 10 +
4 Rothia 6.383 2.002 13.623 100.0 2 54
5 Stenotrophomonas 6.289 0.023 20.681 92.5 8 23 +
6 Veillonella 3.455 1.460 4.994 95.0 5 2
7 Inquilinus 2.990 0.000 11.405 18.8 52 78 +/−
8 Actinomyces 2.419 0.666 4.089 98.8 4 19
9 Haemophilus 2.364 0.006 10.865 70.0 19 20 +/−
10 Fusobacterium 1.542 0.101 3.562 82.5 12 22
Unwell 1 Pseudomonas 30.790 13.553 34.454 84.2 7 6 +
2 Prevotella 15.143 6.885 19.744 96.5 3 16
3 Streptococcus 12.074 5.016 14.122 98.8 1 25 +
4 Stenotrophomonas 9.389 0.096 18.196 87.7 6 9 +
5 Rothia 5.884 1.776 12.203 98.2 2 14
6 Veillonella 4.898 0.886 8.430 93.6 4 11
7 Burkholderia 4.136 0.009 18.832 66.1 16 128 +
8 Staphylococcus 2.631 0.015 9.910 81.3 8 99 +/−
9 Actinomyces 2.138 0.217 4.041 93.0 5 19
10 Inquilinus 1.854 0.000 9.889 19.3 48 33 +/−
PE 1 Pseudomonas 36.645 33.068 36.134 93.8 9 30 +
2 Streptococcus 14.127 9.869 13.198 100.0 1 22 +
3 Prevotella 9.927 7.086 12.885 100.0 2 9
4 Rothia 6.466 0.480 15.744 100.0 3 35
5 Fusobacterium 4.849 0.183 11.018 75.0 20 64
6 Haemophilus 4.755 0.023 17.451 100.0 4 52 +/−
7 Inquilinus 3.512 0.000 8.686 31.3 47 67 +/−
8 Veillonella 2.894 1.069 3.511 100.0 5 11
9 Actinomyces 2.311 0.517 3.661 100.0 6 1
10 Stenotrophomonas 2.275 0.092 5.406 93.8 10 29 +
  1. 1 Prev. prevalence
  2. aMetab. = Metabolism: + aerobic; − anaerobic; +/− facultative anaerobic