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Ancient plant DNA in the genomic era

Nature Plants volume 4, pages 394–396 (2018)Cite this article

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Next-generation sequencing technologies have significantly changed the scope of ancient plant DNA research, moving from analysis of a few loci to generation of ancient genomes. Future research could refine our understanding of plant evolution and adaptation, and provide information for conservation, crop breeding and food security.

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Fig. 1: Sub-fossilised plant macro-remains sources of ancient plant DNA.

References

  1. Willerslev, E. et al. Science 317, 111–114 (2007).

    Article  CAS  Google Scholar 

  2. Orlando, L. & Cooper, A. Annu. Rev. Ecol. Evol. Syst. 45, 573–598 (2014).

    Article  Google Scholar 

  3. Palmer, S. A., Smith, O. & Allaby, R. G. Ann. Anat. 194, 146–156 (2012).

    Article  CAS  Google Scholar 

  4. Jiao, W. B. & Schneeberger, K. Curr. Opin. Plant Biol. 36, 64–70 (2017).

    Article  CAS  Google Scholar 

  5. Styring, A. K. et al. J. Archaeol. Sci. 40, 4767–4779 (2013).

    Article  CAS  Google Scholar 

  6. Nistelberger, H. M., Smith, O., Wales, N., Star, B. & Boessenkool, S. Sci. Rep. 6, 37347 (2016).

    Article  CAS  Google Scholar 

  7. Wales, N., Andersen, K., Cappellini, E., Avila-Arcos, M. C. & Gilbert, M. T. P. PLoS ONE 9, e86827 (2014).

    Article  Google Scholar 

  8. Schrader, C., Schielke, A., Ellerbroek, L. & Johne, R. J. Appl. Microbiol. 113, 1014–1026 (2012).

    Article  CAS  Google Scholar 

  9. Mascher, M. et al. Nat. Genet. 48, 1089–1093 (2016).

    Article  CAS  Google Scholar 

  10. Ramos-Madrigal, J. et al. Curr. Biol. 26, 3195–3201 (2016).

    Article  CAS  Google Scholar 

  11. da Fonseca, R. R. et al. Nat. Plants 1, 14003 (2015).

    Article  Google Scholar 

  12. Kistler, L. et al. Proc. Natl Acad. Sci. USA 111, 1–5 (2014).

    Article  Google Scholar 

  13. Wagner, S. et al. Mol. Ecol. 27, 1138–1154 (2018).

    Article  CAS  Google Scholar 

  14. Sallon, S. et al. Science 320, 1464 (2008).

    Article  CAS  Google Scholar 

  15. Pérez-Zamorano, B. et al. Genome Biol. Evol. 9, 904–915 (2017).

    Article  Google Scholar 

  16. Nakabayashi, K., Okamoto, M., Koshiba, T., Kamiya, Y. & Nambara, E. Plant J. 41, 697–709 (2005).

    Article  CAS  Google Scholar 

  17. Fordyce, S. L. et al. PLoS ONE 8, 1–9 (2013).

    Article  Google Scholar 

  18. Smith, O. et al. Mol. Biol. Evol. 37, 2555–2562 (2017).

    Article  Google Scholar 

  19. Yoshida, K. et al. eLife 2, 1–25 (2013).

    Google Scholar 

  20. Martin, M. D. et al. Nat. Commun. 4, 2172 (2013).

    Article  Google Scholar 

  21. Smith, O. et al. Sci. Rep. 4, 4003 (2014).

    Article  Google Scholar 

  22. Cubas, P., Vincent, C. & Coen, E. Nature 401, 157–161 (1999).

    Article  CAS  Google Scholar 

  23. Springer, N. M. & Schmitz, R. J. Nat. Rev. Genet. 18, 563–575 (2017).

    Article  CAS  Google Scholar 

  24. Lämke, J. & Bäurle, I. Genome Biol. 18, 1–11 (2017).

    Article  Google Scholar 

  25. Llamas, B. et al. PLoS One 7, e30226 (2012).

    Article  CAS  Google Scholar 

  26. Gokhman, D. et al. Science 344, 523–527 (2014).

    Article  CAS  Google Scholar 

  27. Smith, O. et al. Sci. Rep. 4, 5559 (2015).

    Article  Google Scholar 

  28. Meyer, R. S., DuVal, A. E. & Jensen, H. R. New Phytol. 196, 29–48 (2012).

    Article  Google Scholar 

  29. Bevan, M. W. et al. Nature 543, 346–354 (2017).

    Article  CAS  Google Scholar 

  30. Gururani, M. A. et al. Physiol. Mol. Plant Pathol. 78, 51–65 (2012).

    Article  CAS  Google Scholar 

  31. Mickelbart, M. V., Hasegawa, P. M. & Bailey-Serres, J. Nat. Rev. Genet. 16, 237–251 (2015).

    Article  CAS  Google Scholar 

  32. Khoury, C. K. et al. Proc. Natl Acad. Sci. USA 111, 4001–4006 (2014).

    Article  CAS  Google Scholar 

  33. Massawe, F., Mayes, S. & Cheng, A. Trends Plant Sci. 21, 365–368 (2016).

    Article  CAS  Google Scholar 

  34. Mueller, N. G., Fritz, G. J., Patton, P., Carmody, S. & Horton, E. T. Nat. Plants 3, 1–5 (2017).

    Article  Google Scholar 

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Acknowledgements

We thank Geoff Fincher and Matthew Gilliham from the University of Adelaide, Birger Lindberg-Møeller from the University of Copenhagen, and Birgitte Skadhauge from Carlsberg’s Research Laboratory. O.E. is supported by the Administrative Department of Science, Technology and Innovation of Colombia (COLCIENCIAS) and the University of Adelaide Graduate Centre. We thank Elizabeth Reed and Kathryn Hill from the University of Adelaide for providing the samples from Naracoorte Cave. We also thank Nelli Hovhannisyan from the Yerevan State University and Boris Gasparyan, National Academy of Sciences of Armenia, Institute of Archaeology and Ethnography for providing the samples from Areni-1 Cave.

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Authors and Affiliations

  1. Australian Centre for Ancient DNA, University of Adelaide, South Australia, Australia

    Oscar Estrada, Stephen M. Richards & Alan Cooper

  2. Robinson Research Institute, University of Adelaide, South Australia, Australia

    James Breen

  3. University of Adelaide Bioinformatics Hub, School of Biological Sciences, University of Adelaide, South Australia, Australia

    James Breen

Authors
  1. Oscar Estrada
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  2. James Breen
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  4. Alan Cooper
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Correspondence to James Breen.

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Estrada, O., Breen, J., Richards, S.M. et al. Ancient plant DNA in the genomic era . Nature Plants 4, 394–396 (2018). https://doi.org/10.1038/s41477-018-0187-9

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