The vacuolar fusion regulated by HOPS complex promotes hyphal initiation and penetration in Candida albicans

The transition between yeast and hyphae is crucial for regulating the commensalism and pathogenicity in Candida albicans. The mechanisms that affect the invasion of hyphae in solid media, whose deficiency is more related to the pathogenicity of C. albicans, have not been elucidated. Here, we found that the disruption of VAM6 or VPS41 which are components of the homotypic vacuolar fusion and protein sorting (HOPS) complex, or the Rab GTPase YPT72, all responsible for vacuole fusion, led to defects in hyphal growth in both liquid and solid media, but more pronounced on solid agar. The phenotypes of vac8Δ/Δ and GTR1OE-vam6Δ/Δ mutants indicated that these deficiencies are mainly caused by the reduced mechanical forces that drive agar and organs penetration, and confirmed that large vacuoles are required for hyphal mechanical penetration. In summary, our study revealed that large vacuoles generated by vacuolar fusion support hyphal penetration and provided a perspective to refocus attention on the role of solid agar in evaluating C. albicans invasion.

Moreover, Tup1, Nrg1 and Rfg1 are repressors of filamentous growth [8][9][10] .A large number of mutant libraries were used to screen for deficiencies in hyphal growth.For instance, Noble et al. have identified 115 virulence-attenuated C. albicans mutants.Among which, 53 mutants showed defects in morphogenesis, 18 mutants had slow proliferation, and 46 mutants exhibited deficiency in infectivity without defects in morphogenesis or proliferation, indicating that virulence and morphogenesis are related in a complex, non-linear process 11 .In addition, many virulence factors associated with hyphal morphogenesis have been identified, such as GPI-anchored proteins, degradative enzymes, and cell surface adhesins, among which the identification of candidalysin (Ece1) was influential 12 .The invasive ece1Δ/Δ hyphae do not damage epithelia because the lack of candidalysin causes an inability to destroy cellular membranes 13,14 .
In addition to studies on signal transduction and the function of virulence factors, mutants with different hyphae formation abilities in liquid and solid media have been of interest.The Blankenship group screened 124 C. albicans mutants in vitro for distinct filamentation induction conditions and concluded that filamentation in solid versus liquid media represent distinct biological and transcriptional programs 15 .Subsequent studies showed that morphogenesis on solid surfaces depends on several proteins, such as Cwt1, Tpk1, Dfi1, Cek1, and Dck1/Rac1 [16][17][18][19] .These genes are required for invasive filamentous growth on agar but do not influence hyphae formation in liquid media.Notably, null mutants of some genes showed varying degrees of reduction in virulence in mouse models of systemic infection.For example, the virulence of the cwt1 null mutant was not reduced, while the dfi1 null mutant or the cek1 null mutant was significantly attenuated.These studies indicated that the presence of hyphal defects on solid agar was more closely related with the decreased virulence in C. albicans.Morphogenesis on solid media is not only influenced by signal transduction but also related to hyphal penetration.Penetration of host organs or tissues is critical for C. albicans pathogenicity and requires adhesion factors and the generation of sufficient force 20 .Furthermore, the rigidity of hyphae is crucial for immune escape, as macrophages can damage C. albicans by folding hyphae 21 .For invading the epithelial cells, the endocytosis of host cells and the active penetration initiated by C. albicans are equally important 22,23 .Elastic moduli of host cells are ranged from 1 to 100 kPa 24 .Overcoming the mechanical force of the host cell membrane is critical for C. albicans penetration of the host cell and immune escape.Arkowitz and colleagues determined the threshold for C. albicans penetration to be about 200 kPa 25 .However, the source of the force that supports hyphal penetration is still not well defined.
In this study, we unexpectedly discovered that the ability of hyphal growth in the vam6Δ/Δ mutant was different in liquid and solid media.And further study indicates that HOPS-complex-mediated vacuolar fusion promotes hyphal initiation and penetration and thus is required for the invasion of C. albicans in systematic and skin infection models.We predict that targeting vacuolar fusion or vacuole integrity may be a potential strategy to reduce the pathogenicity in C. albicans.

Results
The loss of VAM6 delays hyphal initiation in liquid medium and weakens hyphal formation on solid medium Hyphae formation is necessary for C. albicans to invade host cells.While investigating the function of uncharacterized genes in C. albicans, we unexpectedly found a significant difference in the hyphal defects in the vam6 null mutant in liquid and solid media.The disruption of VAM6 was verified by genomic-specific PCR (Supplementary Fig. 1a, b).Then, we compared the hyphae in the wild-type C. albicans SC5314 and the vam6Δ/Δ mutant.In liquid hyphae-inducing medium, no matter RPMI1640 plus 10% fetal bovine serum (FBS) or Spider medium induced the hyphae formation in both SC5314 and the vam6Δ/Δ mutant.Moreover, calcofluor white (CFW) staining did not show obvious structural defects in hyphal branching and septum.In terms of hyphal length, the disruption of VAM6 resulted in shorter hyphae (Fig. 1a).After induction in liquid RPMI1640 plus 10% FBS or Spider medium for 4 h, the average length of hyphae in the VAM6-deficient mutant was 53.7 µm or 64.7 µm, in contrast to 86.25 µm or 103.2 µm in the wild type.The average hyphal length in the mutant was about 60% of that in the wild type SC5314 (Fig. 1b).Further statistics of hyphal compartments' number showed that either the first branching or the secondary branching in the VAM6-deficient mutant were less (Fig. 1c).The time-lapse analysis of hyphal length and induction time showed that the initiation of germ tube in the mutant was around 30 min, which was nearly 10 min later than the wild-type strain.The average elongation rate in the VAM6disrupted mutant was 0.018 µm/min within 2 h of induction, slightly slower than that of 0.022 µm/min in the wild-type SC5314.In particular, with the extension of induction time, the elongation rate decreased in the vam6 null mutant (Fig. 1d).To further examine the defects caused by the disruption of VAM6, we investigated the hyphae formation on solid media.As shown in Fig. 1e, the defects of hyphae growth in the VAM6-disrupted mutant on the solid media were more obvious than those in the liquid media.On solid RPMI1640 plus 10% FBS medium, the wild-type colony formed obvious hyphal extension around the smooth center.In contrast, the hyphal extensions in the vam6Δ/Δ mutant were much shorter and fewer.Similarly, on Spider medium, unlike the parental strain forming wrinkled colonies with hyphal extension around the colony, the vam6Δ/Δ mutant only formed wrinkles without hyphal extension.These results indicated that the VAM6-disrupted mutant possessed impaired hyphal production.
As hyphae are important components in maintaining the structure of C. albicans biofilms, we explored biofilm formation.Side-view and axial confocal projections revealed presence of hyphae in biofilms of the wild-type strain and the vam6 null mutant.Strains at the base of the silicone produced hyphae rising to a dense zone, and longer hyphae above the dense zone.The long hyphae folded over on the surface of the biofilm.The depth of biofilm in the vam6 null mutant was shorter than that in the wild type, which could be due to the shorter hyphae in the mutant (Fig. 1f).An XTT colorimetric assay showed that there was no significant difference in the number of living cells between the VAM6-deficient and wild-type biofilms (Fig. 1g).Our results indicated that the disruption of VAM6 reduced the rate of hyphal elongation which affected the branching appearance and the length of hyphae.The more pronounced deficiency of hyphae formation on solid media in the vam6 null mutant prompted us to speculate whether Vam6 plays a more significant role in maintaining hyphae penetration into agar.
The fragmented vacuoles caused by the loss of HOPS complex impairs hyphal initiation and penetration VAM6 has been reported as a vacuole and mitochondria patch protein in C. albicans, which is crucial for autophagy 26 .Meanwhile, Vam6 (Vps39), Vps41 and Class C proteins form the HOPS complex, which bind the Rab GTPase Ypt7 via its subunits Vps39 and Vps41 in the tethering step of vacuolar fusion in Saccharomyces cerevisiae (Fig. 2a) 27 .Based on the hyphal phenotypes of mutants with fragmented vacuoles 28 , we speculated that the lost function of HOPS complex caused by the disruption of VAM6 may be the main reason for the hyphal penetration defects on solid media.To test this hypothesis, one of the components of HOPS complex, VPS41, and the Rab GTPase YPT72 in C. albicans were knocked out, respectively; in addition, revertant strains were constructed (Supplementary Fig. 2a-f).The specific dye FM4-64 was used to detect the morphology of vacuoles.Our results showed that vacuoles in the vam6Δ/Δ, vps41Δ/Δ and ypt72Δ/Δ mutants exhibited fragmentation without any discernable normal vacuole structures, while one or more large oval vacuoles were present in the wild-type SC5314 and the revertant strains (Supplementary Fig. 2g).To further image the structure of the fragmented vacuoles, the probe VacuRed, a silicon-substituted coumarin-based fluorophore developed by our group 29,30 , targeting fungal vacuoles was designed and synthesized, which improved the imaging quality of small vesicles.VacuRed was explicitly enriched in yeast and hyphal vacuoles (Fig. 2b and Supplementary 2h).The large vacuoles were clearly observed in the wild-type yeast-form mother cells while budding or hyphal germinating.The volume of large vacuoles occupied almost all the entire cytoplasm.There were more fragmented vacuoles in the yeast-form daughter cells than those in the wild-type mother cells.Similarly, during germ tube extension, there were several vacuoles in the hyphal compartment and apical region.In contrast, the vacuoles in vam6Δ/Δ, vps41Δ/Δ or ypt72Δ/Δ mutants were even more fragmented.With the high resolution of the VacuRed probe and STED imaging, some small vesicles in the HOPS-complex-deficient mutants were clearly distinguished (Fig. 2c).In the wild-type yeast-form C. albicans, the large vacuoles were irregularly shaped and the inner diameter of 50 randomly selected large vacuoles was about 2782 ± 1259 nm.In contrast, the vacuoles in the vam6Δ/Δ, vps41Δ/Δ, and ypt72Δ/Δ mutants were mostly regular round with diameters of 436 ± 91 nm, 484 ± 112 nm, and 464 ± 99 nm, respectively.The STED imaging of vacuolar membrane suggested that the HOPS complex did not influence the integrity of the membrane.To further confirm the integrity of vacuolar membrane in the mutants, quinacrine, a dye that accumulates inside acidic vacuoles, was used to determine whether the compartments of the fragmented vacuoles were acidic and separated by membranes 31 .As shown in Fig. 2d and Supplementary Fig. 2i, the vacuolar membrane of the wild-type strain was stained by VacuRed, while green fluorescence of quinacrine was distributed within the vacuolar membrane.In the HOPS-complex-deficient mutants, the distribution of fluorescence of the red VacuRed and the green quinacrine of each fragmented vacuole did not be clearly resolved due to the limits of microscopic resolution.However, the obvious colocalization of the two probes indicated that the fragmented vacuolar compartments were also acidic and isolated from the cytoplasm by the vacuolar membranes.Transmission electron microscopy also showed that the refraction inside the vacuole was different from that of other organelles (Fig. 2e).Large vacuoles and intact membrane edges were seen in the wild-type C. albicans.In contrast, the vacuolar volume was significantly smaller in the HOPS-complex-disrupted mutants, whereas the vacuolar edge contour was still distinguishable.
To clarify the HOPS complex is primarily localized on the vacuolar membrane to mediate fusion, we constructed the GFP-Vam6, GFP-Vps41, and GFP-Ypt72 strains and performed fluorescence colocalization assays (Supplementary Fig. 2j-n).The colocalization of VacuRed with GFP-Vam6, GFP-Vps41, and GFP-Ypt72 (Fig. 2f), on the one hand, confirmed the specific distribution of VacuRed on the vacuolar membranes, and on the other hand, verified the colocalization of three target proteins on the vacuole membrane to mediate the fusion of vacuoles.To better observe the vacuolar fusion process, the Yvc1-GFP strain (NKF105) from Yu group, which is a highly abundant Ca 2+ channel protein located on the vacuolar membrane, was used 32 .Unexpectedly, we found that Yvc1-GFP was accumulated at the vacuolar fusion site to form a bright region, which was used as a marker for vacuolar fusion (Fig. 2g).Real-time imaging revealed that the aggregated highlight of Yvc1-GFP disappeared once the process of vacuolar fusion was complete (Supplementary Video 1 and 2).Next, we disrupted VAM6 gene in the Yvc1-GFP strain (Supplementary Fig. 2o, p).In Yvc1-GFP-vam6Δ/Δ mutant, green fluorescence exhibited as diffusion-like distribution.Real-time imaging for 10 min revealed the absence of localized aggregation regions, indicating the lack of vacuolar fusion process (Fig. 2g, Supplementary Video 3 and 4).Collectively, these results suggested that the HOPS complex mainly promoted the fusion of vesicles but did not affect the integrity of the vacuolar membrane.
Having established the function of VAM6, VPS41, and YPT72 in vacuolar fusion, we then investigated whether the three mutants showed similar defects in hyphae formation.As expected, the disruption of VPS41 or YPT72 also resulted in approximately 40% shortening of hyphae length in C. albicans in liquid media (Fig. 2h, i).While, complementation of VAM6, VPS41, and YPT72 restored the hyphal length of the disrupted mutants, respectively (Supplementary Fig. 2q).The colony morphology of these HOPS-complex-deficient strains on solid hyphae-inducing media was similar.To describe the morphology of colonies in more detail, we defined the two distinct regions as the peripheral region and the central region.We measured the diameter of the central region (C) and determined the distance between hyphal insertion and the edge of the central region (P) (Fig. 2j).The quantitative analysis showed that the peripheral length of three mutant colonies was significantly shorter than that of the wildtype SC5314, which only accounted for about 15-30% on the RPMI1640 plus 10% FBS medium (Fig. 2k, l).To evaluate hyphal penetration ability, the colonies on solid agar were sectioned.The width and depth of colonies were labeled as W and D, respectively (Fig. 2m).When cultured on agar plates for 5 days, the penetration depth in the wildtype SC5314 was about 2.31 mm on RPMI1640 + 10% FBS agar and 5.23 mm on Spider agar (Fig. 2n).In contrast, the penetration depth of vam6Δ/Δ, vps41Δ/Δ and ypt72Δ/Δ mutants was only about 0.58 mm, 1.05 mm, and 1.35 mm on RPMI1640 + 10% FBS agar, and about 0.98 mm, 1.78 mm and 1.89 mm on Spider agar, respectively.According to the radiative morphology of invading hyphae, the penetration direction of the wild-type SC5314 was evenly distributed from horizontal 0°to vertical 90°.In contrast, most of the penetrated hyphae of HOPS-complex-deficient strains were vertical (90°).From the physical and mechanical analysis, due to the vertical downward effect of gravity, the penetrating force required for vertical penetration is less, which further reflected that the penetration capability of HOPScomplex-deficient mutants was significantly lower than that of the wild-type SC5314 (Fig. 2n).The VAM6, VPS41, and YPT72 revertant strains showed similar hyphal morphology and invasion depth to those of the wild-type SC5314 on solid agar, which confirmed that the hyphal deficiencies were specifically caused by the disruption of the HOPS complex (Supplementary Fig. 2r).Collectively, the disruption of the HOPS complex resulted in reduced initiation, elongation and penetration of hyphae in C. albicans.

HOPS complex is required for C. albicans to invade and damage the host
Impaired agar invasion may be associated with reduced virulence in C. albicans, as the active penetration is a mechanism of C. albicans invasion of epithelial cells 33 .Weakened penetration of hyphae in C. albicans might indicate the reduced damage to host cells and tissues, so the interaction of HOPS-complex-disrupted mutants with human umbilical vein endothelial cells (HUVECs) and peritoneal macrophages (PM) was evaluated 34 .We assayed the release of lactate dehydrogenase (LDH), which rapidly accumulates in the cell culture when the plasma membrane is damaged 35 .As shown in Fig. 3a, C. albicans SC5314 caused the highest LDH release rate when cultured with HUVECs for 6 h and 9 h.The LDH release rate caused by vam6Δ/Δ, vps41Δ/Δ or ypt72Δ/Δ mutants was about 15% lower than that of SC5314 in cells co-incubated for 9 h.Quantification of LDH release also showed The hyphal length in the wild-type strain and vam6Δ/Δ mutant in RPMI1640 + 10% FBS or Spider medium.Box plots indicate median (middle line), 25th, 75th percentile (box), and minimum and maximum value as well as outliers (single points); n = 50 hyphae.c The number of clearly separated hyphae and their first and secondary branching in RPMI1640 + 10% FBS medium was counted.Data were presented as mean ± SD; n = 45 hyphae in SC5314, n = 27 hyphae in vam6Δ/Δ.d The dynamics of hyphal growth in C. albicans strains in liquid RPMI1640 + 10% FBS medium.The lengths of hyphal elongation were recorded for 120 min upon the initiation of hyphal induction.Images were collected for 50 time points, with one image every that the killing effect of HOPS-complex-disrupted mutants on HUVEC cells was weakened.In addition to invading epithelial cells, cell membrane penetration by hyphae is important to escape the killing of innate immune cells 36 .The fluorescence of propyl iodide (PI) in peritoneal macrophages co-incubated with C. albicans was used to investigate cell death.Most C. albicans strains were phagocyted after 3 h of co-incubation.Also, the hyphae in C. albicans SC5314 penetrating macrophages were significantly much more and longer than those in vam6Δ/Δ, vps41Δ/Δ or ypt72Δ/Δ mutants (Fig. 3b).Correspondingly, the percentage of PI-positive macrophages was decreased in cells cultured with vam6Δ/Δ, vps41Δ/Δ or ypt72Δ/Δ mutants for 3 and 6 h, while the revertant mutants resulted in more dead macrophages similar to that of WT C. albicans (Fig. 3c and Supplementary Fig. 3a, b).These data suggested that the HOPS complex was also required for maintenance the ability to kill macrophages.Overall, the HOPS complex participates in active penetration through host cells.Subsequently, we evaluated the effect of the HOPS complex on C. albicans pathogenicity in murine models of systemic and cutaneous candidiasis.In the systemic infection models, C. albicans strains were injected through the tail vein.Mice injected with the wild-type SC5314 were all died within 11 days.However, almost all mice injected with vam6Δ/Δ, vps41Δ/Δ or ypt72Δ/Δ mutants were alive, with a survival rate of 90-100% within 21 days (Fig. 3d).As kidneys are the primary target organs in systemic candidiasis, decreased kidney function can also reflect the severity of C. albicans infections 37 .Our results showed that the levels of serum urea and creatinine in mice infected with vam6Δ/Δ, vps41Δ/Δ or ypt72Δ/Δ mutants were significantly lower than those in mice infected with SC5314, which indicated the importance of HOPS complex in causing kidney injury (Fig. 3e, f).Consistently, the fungal burden in kidneys in mice infected with vam6Δ/Δ, vps41Δ/Δ or ypt72Δ/ Δ mutants for 5 days was significantly decreased (Fig. 3g).The periodic acid-Schiff (PAS) stained sections showed that the hyphal length in kidneys infected with vam6Δ/Δ, vps41Δ/Δ or ypt72Δ/Δ mutants was significantly shorter than that in kidney infected with the wild-type SC5314, which was consistent with the observed hyphal defects in vitro (Fig. 3h, i).The virulence of the revertant strains of VAM6, VPS41, and YPT72, respectively, was similar to that of the wild-type C. albicans in mice.All the mice infected with the revertant and the wild-type strains died within 9 days (Supplementary Fig. 3c).The fungal load in kidneys of mice infected with the revertant strains showed no significant difference in comparison with the mice infected with the wild-type C. albicans (Supplementary Fig. 3d), although the re-introduction of the three genes did not completely restore the hyphal length in mice (Supplementary Fig. 3e).These results confirmed that the hyphal penetration maintained by the HOPS complex is critical for C. albicans invasion to solid organs.A similar phenomenon was observed in a mouse model of C. albicans skin infection (Fig. 3j).Mice infected with vam6Δ/Δ, vps41Δ/Δ or ypt72Δ/Δ mutants for 5 days had less exfoliation and visible skin damage (Fig. 3k).Consistent with the skin lesions, mice infected with the HOPS-complex-deficient mutants had lower fungal load in the skin than that infected with wild-type C. albicans (Fig. 3l).PAS staining showed that the length of hyphae invading the skin in mice infected with vam6Δ/Δ, vps41Δ/Δ or ypt72Δ/Δ mutants was shorter and the invasion depth also decreased, which indicated a more minor lesion and reduced skin damage (Fig. 3m, n).Similarly, the complement of VAM6, VPS41, and YPT72 restored the damage, fungal load, hyphae length, and invasion, in the skin of mice infected with the revertant mutants (Supplementary Fig. 3f-i).Collectively, these results of infection models indicate that the HOPS complex is critical in maintaining hyphal invasion and injury to solid tissue.

Inactivation of TOR signaling in HOPS-complex-deficient mutants results in delayed hyphae initiation
The disruption of VAM6, VPS41, or YPT72 resulted in fragmented vacuoles and reduced hyphae initiation and penetration.To clarify the main reason for the reduced virulence of HOPS-complex-deficient mutants, the secretion of some virulence factors and the activation of target of rapamycin (TOR) signaling pathways were examined.Fragmented vacuoles may influence the protein secretion, such as secreted aspartyl proteases (SAPs), which secretes simultaneously with yeast-tohyphae transition and contributes to C. albicans virulence 38 .In our study, SAPs secretion was assayed on the YCB-BSA agar.The halo around of each colony was produced by the SAP-mediated hydrolysis of BSA.By measuring the size of each halo, we found that there was no significant difference in SAP secretion between the wild type, the HOPS-complex-deficient mutants, and the revertant strains (Supplementary Fig. 4a).
In addition to SAPs secretion, the activity of TOR pathway is also a central regulator of filamentation in C. albicans, which is dependent on a functional HOPS complex in S. cerevisiae 39,40 .At first, we examined the sensitivity of the vam6Δ/Δ, vps41Δ/Δ, and ypt72Δ/Δ mutants to rapamycin.Growth of each mutant was significantly reduced after the treatment with 3 nM or 5 nM rapamycin (Fig. 4a).And the complement of these three genes has fully restored the sensitivity to rapamycin (Supplementary Fig. 4b).Under nitrogen starvations, as shown in Fig. 4b, low dose of ammonium sulfate or arginine induced significantly decreased P-S6 signals in the vam6Δ/Δ, vps41Δ/Δ, and ypt72Δ/Δ mutants when compared with the wild-type SC5314, while the revertant mutants restored the increased activation of P-S6 (Supplementary Fig. 4c, d).These results indicated that TOR activity was weakened in C. albicans mutant strains with the defective HOPS complex.Since Tor1 can regulate the expression of adhesin genes, we then detected the transcription of genes encoding virulence factors, such as ALS1, ALS3, ALS5, HWP1, ECE1, SAP2, and SAP6 39 .The wild-type C. albicans and the HOPS-complex-deficient mutants were cultured in RPMI1640 plus 10% FBS medium with or without HUVECs (MOI = 1) for 1.5 h and 3 h.The relative expression of ALS3, HWP1, ECE1 and SAP6 were significantly up-regulated during incubation, either with or without the HUVECs, but there was no significant difference between the wild type and the HOPS-complex-deficient mutants (Supplementary Fig. 4e).Our results suggested that the reduced virulence in the HOPS-complex-deficient strains may not be caused by the decreased expression or secretion of virulence factors.Meanwhile, the impaired TOR activity did not reduce the normal proliferation of C. albicans (Supplementary Fig. 4f), indicating that the phenotypes of the HOPScomplex-deficient mutants were not caused by the decreased growth.
To determine whether the TOR pathway is involved in regulating the hyphae formation and penetration on solid agar, the effect of rapamycin on hyphal morphology was then evaluated.The hyphal length of C. albicans was decreased in dose-dependent manner in both liquid RPMI1640 plus 10% FBS or Spider medium supplemented with rapamycin (Supplementary Fig. 4g).As for the hyphae formed on solid agar in the wild-type SC5314, our results showed that rapamycin reduced significantly both the width of colony and the hyphal length embedded in solid medium (Fig. 4c).Interestingly, the hyphae penetrating into the agar were still radial rather than vertical, suggesting m The model of vertical section of hyphal colony on solid agar.Width (W), the width of colony ranges under the surface of agar; Depth (D), the maximum distance of hyphae penetrating into agar from the surface of agar.n Vertical sections of hyphal colonies on solid media were observed by microscopy.The W and D values (mm) were quantified by Image J. Scale bars = 1 mm.Data were presented as mean ± SD. n = 3 colonies.Two-tailed unpaired t-test (i, k, l, n).The representative images shown are from 3 biological repeats (b-g, k, l, n).Source data are provided as a Source Data file.that decreased TOR signaling activity is not the main reason for impaired hyphal penetration in the vam6Δ/Δ, vps41Δ/Δ, and ypt72Δ/Δ mutants.
Overexpression of the small GTPase Gtr1, a subunit of the TORC1activating EGO complex, has been shown to restore TOR activity in C. albicans 41,42 .To further clarify the effect of TOR signaling in hyphal initiation and penetration, the GTR1 gene was overexpressed in the vam6Δ/Δ mutant.The GTR1 OE -vam6Δ/Δ mutant was confirmed by the genomic PCR, the high expression of GTR1 detected by RT-qPCR, and increased resistance to rapamycin (Supplementary Fig. 4h, Fig. 4d, e).
Our results showed that overexpression of GTR1 restored the delayed germination caused by the disruption of VAM6 in liquid medium.Either in RPMI1640 plus 10% FBS or Spider medium, there was no significant difference in the proportion of strains formed germ tubes between GTR1 OE -vam6Δ/Δ mutant and the wild-type strain, which suggested that the signaling transduction of hyphae initiation was recovered (Fig. 4f).Moreover, overexpression of GTR1 in the vam6Δ/Δ mutant promoted the hyphal elongation through measuring the average hyphal length after incubation for 2 h (Fig. 4g).Subsequently, we investigated whether GTR1 overexpression could recover the hyphal deficiency in the vam6Δ/Δ mutant on solid agar.As shown in Fig. 4h, the GTR1 OE -vam6Δ/Δ mutant did not deeply embed into the agar or form a radial hyphal distribution similar to the wild-type SC5314, either on RPMI1640 plus 10% FBS or Spider agar.On the contrary, the GTR1 OE -vam6Δ/Δ mutant had a similar colony morphology to the vam6Δ/Δ mutant, which indicated that GTR1 overexpression did not restore the penetration in C. albicans to solid agar.Overall, our results suggest that overexpression of GTR1 restores the TOR activity of the vam6Δ/Δ mutant during the hyphal initiation but did not promote hyphal penetration into the agar.

Vacuole fusion supports hyphal mechanical penetration into the solid agar
The phenotypes of GTR1 OE -vam6Δ/Δ mutant indicated that the slightly delayed hyphal initiation in HOPS-complex-deficient mutants is not the main reason for the obvious penetrating defects on solid agar.Therefore, the morphological integrity of large vacuoles maintained by vacuole fusion may be more critical, possibly by changing the compartment size to provide hyphal penetration forces.As shown in Fig. 5a, vacuoles stained with VacuRed probes indicated the presence of multiple large vacuoles in hyphae induced in either liquid or solid media.In particular, the morphology of vacuoles located in the hyphal tips on solid media is significantly different from that in liquid medium.In hyphal cells scraped from solid RPMI1640 plus 10% of FBS medium, the hyphae tips were enlarged and elliptic in shape.The interior of the hyphal tip was filled with a large vacuole that almost occupies the leading septum, which suggested that the large vacuole may be required for the expansion of hyphal tips.In order to accurately discern the presence of large vacuoles localized at the tips of hyphae, the vacuolar morphology in Yvc1-GFP strains in the agar sections was observed.Consistent with the hyphae scraped from agar, the tips of some but not all elongated hyphae were distributed with large vacuoles (Fig. 5b).When the Yvc1-GFP strains were incubated with HUVECs, some small dense vacuoles (solid globules in fluorescence) were accumulated at the tips of hyphae, but they did not completely fuse into hollow large vacuoles (Supplementary Fig. 5a).This result indicates that hyphae can penetrate the cell membrane without large hollow vacuoles in the liquid medium.Compared with the wild-type C. albicans, the vacuoles in the HOPS-complex-deficient mutants scraped from the agar still showed fragmentation without obvious large vacuoles (Fig. 5c and Supplementary Fig. 5b).To verify whether the large vacuoles in the tips were enlarged by vacuole fusion, the dynamic changes of vacuoles in hyphae were observed.Using live cell imaging, we captured vacuolar fusion in hyphae.Especially in the hyphal tip, two vacuoles fused to form a larger one in SC5314 (Fig. 5d), and fusing vacuoles were also observed in the hyphal tips in the Yvc1-GFP strains (Supplementary Video 1 and 2).In contrast, there was no fusion of the fragmented vacuoles in the vam6Δ/Δ, vps41Δ/Δ and ypt72Δ/Δ mutants (Supplementary Video 5, 6, and 7).These results suggested that large vacuoles produced by fusion in hyphae may play an important role in promoting hyphal penetration to solid agar.
The disruption of the HOPS complex caused both delayed hyphal initiation and fragmented vacuoles.To exclude the effects of delayed hyphal initiation on the hyphal penetrating into agar, we tried various hyphae-inducing media to activate different intracellular signaling pathways to induce hyphal initiation in vam6Δ/Δ, vps41Δ/Δ, and ypt72Δ/Δ mutants.Fortunately, we found that the addition of 10 mM or 50 mM of calcium chloride in Spider medium significantly promoted hyphae formation in vam6Δ/Δ, vps41Δ/Δ and ypt72Δ/Δ mutants on solid agar (Supplementary Fig. 5c).Moreover, at the early stage of hyphal induction (24 h and 48 h), vam6Δ/Δ, vps41Δ/Δ and ypt72Δ/Δ mutants formed burr invasion to the agar containing calcium with longer hyphae (reflected by the parameter D), in comparison with the hyphae on the agar without calcium, which indicated that calcium would effectively promote the hyphal initiation in the HOPS-complex-deficient mutants.But, from the morphologies of colonies induced for 5 days, the hyphal invasion depth in vam6Δ/Δ, vps41Δ/Δ and ypt72Δ/Δ mutants into agar was significantly shorter than that in the wild-type SC5314, as the depth of invasion was only about 1.79 mm, 1.82 mm and 2.00 mm, and was similar to that of 1.69 mm, 1.74 mm and 2.19 mm in the agar without calcium (Fig. 5e, f).This result indicated that although calcium restored the initiation of hyphae growth induced for 48 h, it did not restore the penetration depth of HOPS-complex-deficient mutants into 2% agar.To further verify the defect in HOPS-complexdeficient mutants on solid medium resulting from the insufficient mechanical force of hyphae, we investigated the influence of different concentrations of agar on the invasive zones, as the invasion zone was decreased with the increase of agar concentration 43 .As shown in Fig. 5g, we adjusted the agar concentrations to 0.5%, 1%, and 2% in Spider medium with 10 mM calcium, respectively.With the concentrations of agar increased, the invading hyphae of all strains were sparser, and the length of hyphae around the colony was slightly reduced.The peripheral region (P) and central region (C) value of different colonies were shown in Supplementary Fig. 5d and the ratios of peripheral region (P) of HOPS-complex-disrupted mutants to that of the wild-type C. albicans at the same agar concentration were shown in Fig. 5h.In vam6Δ/Δ, vps41Δ/Δ, and ypt72Δ/Δ mutants, the deficiency of hyphal invasion in 2% agar is significantly larger than that in 0.5% agar.Similar inverse relationship between the length of hyphal extension and agar concentration was further demonstrated in RPMI1640 plus 10% FBS medium supplemented with 0.5% to 2% agar.The hyphal invasion ratio in vam6Δ/Δ, vps41Δ/Δ, and ypt72Δ/Δ mutants had greater deficiencies in 2% agar than in 0.5% or 1% agar (Fig. 5i, j, Supplementary 5e).Penetration of solid medium with higher concentrations of agar needs stronger mechanical force of hyphae.Therefore, the reduced peripheral region suggested that the HOPS-complexmediated vacuole fusion is necessary to maintain the hyphal mechanical force.Thus, our results suggest that fragmented vacuoles may result in reduced mechanical forces supporting hyphal penetration in C. albicans.

Hyphal mechanical penetration is required for C. albicans pathogenicity in vivo
The disruption of the HOPS-complex delayed hyphal initiation and weakened the mechanical support of large vacuoles.Next, we examined which of them had a greater effect on the pathogenicity in C. albicans.As shown in Fig. 6a, the overexpression of GTR1 failed to recover the vacuole fusion caused by VAM6 disruption, and no large vacuoles were observed in GTR1 OE -vam6Δ/Δ mutant.The hyphae initiation and hyphal length of GTR1 OE -vam6Δ/Δ in liquid medium was restored (Fig. 4f, g), but the ability to penetrate agar was still defective (Fig. 4h).So, the pathogenicity of vam6Δ/Δ and GTR1 OE -vam6Δ/Δ mutants was compared.The co-incubation of the wild-type SC5314, vam6Δ/Δ or GTR1 OE -vam6Δ/Δ mutant with HUVECs showed that the overexpression of GTR1 almost completely recovered the invasion and killing effect of the vam6Δ/Δ mutants, as the proportion of PI-positive cells and the release of LDH caused by GTR1 OE -vam6Δ/Δ mutant was similar to those caused by SC5314 (Fig. 6b, c).However, in the model of systemic C. albicans infection, mice infected with either GTR1 OE -vam6Δ/Δ or vam6Δ/Δ mutant exhibited higher survival rates and decreased fungal burdens in kidneys compared to the wild-type group.No significant difference was observed among mice infected with GTR1 OE -vam6Δ/Δ or vam6Δ/Δ mutants (Fig. 6d, e).Consistently, kidney sections stained by PAS showed that GTR1 OE -vam6Δ/Δ and vam6Δ/Δ mutants were unable to form elongated radial hyphae, and the extent of kidney damage caused by the mutants was significantly smaller than that caused by the wild-type SC5314 (Fig. 6f, g).In the mouse model of skin infection, GTR1 OE -vam6Δ/Δ mutant did not cause more severe skin damage or deeper tissue invasion compared to the vam6Δ/Δ mutant (Fig. 6h).Mice infected with vam6Δ/Δ and GTR1 OE -vam6Δ/Δ had similar fungal load and hyphae length in skin, but both were lower than those of mice infected with the wild-type C. albicans (Fig. 6i-k).Overall, our results showed that the overexpression of GTR1 partially restored the mammalian cell killing in the vam6Δ/Δ mutant in vitro.However, this overexpression did not enhance the invasion of solid organs or alleviate the reduced virulence caused by the disruption of VAM6 in vivo.
It is reported that the vac8 null mutants have deficiencies in the movement of vacuoles from mother cells to daughter cells 44 .The disruption of VAC8 resulted in depleted vacuoles in the emerging yeast buds and smaller vacuoles in hyphae induced in liquid serum 45 .Thus, we hypothesized that the deletion of VAC8 would lead to fewer and smaller vacuoles in hyphae and hyphae tips, which in turn reduce hyphal penetration and virulence.To further confirm the important role of large vacuoles, the disruption of VAC8 was constructed in our study (Supplementary Fig. 6a, b).As show in Fig. 7a, the hyphal germination rate of vac8Δ/Δ mutants was lower than that of wild-type C. albicans after a 40-min induction period, similar to that observed in the vam6Δ/Δ mutants.However, after being induced for 4 h, the length of hyphae formed by the vac8Δ/Δ mutants was longer compared to that in the vam6Δ/Δ mutants (Fig. 7b, c).For agar penetration, the initial behavior of vac8Δ/Δ mutants on solid agar resembled that of vam6Δ/Δ.After 48 h of cultivation, the invaded depth of vac8Δ/Δ and vam6Δ/Δ was significantly smaller than that of the wild-type C. albicans.But to our surprise, when the cultivation time extended to 5 days, the vac8Δ/Δ mutant exhibited a significantly greater penetration depth compared to the vam6Δ/Δ, indicating that mechanical penetration of vac8Δ/Δ was not significantly impaired (Fig. 7d, e).
The vacuolar morphology in the vac8 null mutant were then explored.In consistence with the previous studies, in the hyphae induced for 1.5 h in liquid RPMI1640 plus 10%FBS medium, the disruption of VAC8 resulted in an augmentation of vacuole volume in yeast cells, while both the number and volume of vacuoles decreased in the hyphal tubes.However, when the hyphae were induced for 4 h, Scale bars = 1 mm.g Top view of hyphal colony on Spider + 10 mM CaCl 2 solid plates containing different concentrations of agar.h The hyphae invasion ratio calculated by P HOPS-complex-deficient mutants /P SC5314 in the same concentrations of agar.Parameters C and P of hyphal colonies in (g) were measured by Image J. n = 13 colonies.i Top view of hyphal colony on RPMI1640 + 10% FBS solid plates containing different concentrations of agar.Three biological replicates were carried out.One of the representative images are shown (e, g, i).j The hyphae invasion ratio calculated by P HOPS-complex-deficient mutants /P SC5314 in the same concentrations of agar.Parameters C and P of hyphal colonies in i were measured by Image J. n = 7 colonies.Data were presented as mean ± SD (h, j).Two-tailed unpaired t-test (f, h, j).Source data are provided as a Source Data file.there were no significant differences observed in the number or size of hyphal vacuoles between the vac8Δ/Δ mutants and the wild-type C. albicans (Fig. 7f).The vac8Δ/Δ mutants scraped from solid agar were also filled with large vacuoles in the hyphal tubes and tips (Fig. 7g).These results were contrary to our initial hypothesis that the vac8 null mutants would lack apical vacuoles, but our findings suggested that the newly synthesized and fused large vacuoles within the hyphae were efficient to facilitate the hyphae extension and penetration into the agar.
The pathogenicity of the vac8Δ/Δ mutant was consistent with the agar-invasive phenotypes.There was no apparent reduction in its virulence compared to the wild-type C. albicans.In the C. albicansperitoneal macrophages co-incubation assays, the proportion of PIpositive cells damaged by vac8Δ/Δ was not different from that by the wild-type C. albicans, but was higher than that damaged by vam6Δ/Δ (Fig. 7h-j).In the systemic infection model, mice infected with vac8Δ/Δ from the tail vein had a survival rate of approximately 30% within 21 days, which was higher than that in mice infected with the wild-type C. albicans (Fig. 7k), yet lower than that in mice infected with the HOPScomplex-deficient mutants (Fig. 3d).These results indicated that the pathogenicity of the vac8Δ/Δ mutant was reduced compared with that of wild-type C. albicans, but was still stronger than that of the HOPScomplex-deficient mutants.The renal fungal load did not show significant difference between vac8Δ/Δ and the wild-type C. albicans infected mice for 5 days (Fig. 7l).Consistently, the length of hyphae in kidneys of mice infected with vac8Δ/Δ mutant was similar to that of mice infected with the wide type C. albicans (Fig. 7m, n).Subsequently, we assessed the pathogenicity and invasion of vac8Δ/Δ in the murine skin infection model.Notably, no significant difference was observed in the dorsal skin lesions and fungal load within the skin homogenates between mice infected with vac8Δ/Δ and the wild-type C. albicans (Fig. 7o, p).Through the PAS staining, we found that the hyphae length of vac8Δ/Δ mutants invading to the skin was similar to the wild-type C. albicans (Fig. 7q, r).Collectively, although the hyphae initiation was slowed, but the ability to penetrate agar was not significantly reduced in the VAC8-disrupted mutant.As a result, the lethality of vac8Δ/Δ in systemic infection models was reduced in comparison with the wildtype strain but was still higher than that of the HOPS-complex-deficient strains.The results of GTR1 OE -vam6Δ/Δ (normal hyphae initiation but defect in hyphae penetration) and vac8Δ/Δ (slowed hyphae initiation but normal in hyphae penetration) mutants indicated that both hyphae initiation and penetration are required for the pathogenicity of C. albicans, but the large vacuoles produced by vacuole fusion play a decisive role in maintaining the penetration of C. albicans into solid tissues in host.

Discussion
C. albicans can transform into different morphologies during commensalism and infection, such as yeast, hyphal, pseudohyphal, white, opaque, and gray cells 46 .Among them, the regulation of yeast-tohyphae transition and its influence on virulence have been studied widely.During the hyphal initiation and elongations, the critical transcription factors and signaling pathways, including MAPK, Ras/cAMP/ PKA, Cdc28/Hgc1, TOR, and pH sensory pathways, as well as the dynamics of septin ring and actin structures, have been extensively identified 16 .Furthermore, novel bioinformatics strategies have also been constructed to elucidate the hyphae forming transcriptional and protein networks 9,47 .These studies clarified the hyphae formation pathways activated by exogenous and endogenous signals.In the process of signaling transduction, the morphology of fungal cells changes dramatically.However, the changes in organelles, including the vesicle transports in maintaining hyphal initiation and extension, have been poorly studied 18,48 .Gow et al. have observed the vacuolar movements and segregation during the morphogenetic transition in C. albicans by FM4-64 staining, while the biological significance of vacuolar dynamics and the mechanism of action has not been studied in depth 49 .In this study, we identified the defect in vacuole fusion in the HOPS-complex-deficient mutants and characterized their insufficient ability of hyphae formation.Compared with the slightly delayed initiation and shortened length in the liquid medium, we found that the hyphae of HOPS-complex-disrupted mutants showed more significant defects on solid agar.The effects of defective vacuole fusion on C. albicans invasion and virulence were then evaluated systematically in fungi-cell co-incubation and mouse infection models.The decreased virulence is primarily due to the impaired hyphal initiation and penetration in HOPS-complex-deficient mutants.On one hand, we elucidated the necessity of HOPS-complex-mediated vacuole fusion in maintaining hyphal initiation by facilitating TOR signaling activation.Overexpression of GTR1 restored the delayed hyphal initiation caused by the disruption of VAM6.On the other hand, by real-time observing of the vacuole fusion in hyphae, we proved that the fusion of vacuoles creates large vacuoles in the hyphal septum, which are essential for the active penetration of hyphae into solid agar and host cells.Active penetration was used to describe the process of C. albicans hyphae physically pushing their way into the epithelial cell, which was also an important way for engulfed C. albicans to destroy the immune cells membrane 33 .Our study also elucidated the essential role of large vacuoles in maintaining the hyphal initiation and active penetration of C. albicans, which provides new insights into the pathogenic mechanism of dimorphic or filamentous fungi.
Fungal vacuole is critical for maintaining osmotic pressure, degrading macromolecules, storing nutrients, and resisting stresses 50 .Cellular vacuolar space is associated with the cell cycle changes of yeast and hyphae, attributed to the size-regulated functions in eukaryotic cells.Many studies have found that fragmented vacuoles lead to changes in hyphal morphology, such as the hyphal branching phenotypes of VAC1, VAM2, VAM3, and VAC8 null mutants 45,51 .As an opportunistic pathogen, it is significant to elucidate the regulatory mechanisms of fragmented vacuoles on the pathogenicity of C. albicans.Our study revealed the discriminative effect of fragmented vacuoles on the growth of hyphae in liquid and solid media.Fragmented vacuoles led to deficiencies in both TOR signaling activation and hyphal penetration forces.Previous studies have shown that the TOR pathway senses multiple nutritional signals, whose activation relies on complex regulatory networks, such as the EGO complex, PIB2, and phosphatidylinositol 3-phosphate (PI(3)P) pathways 41,52,53 .Our studies indicated that the TOR signaling activation maintained by large vacuoles is also important for the timely responses of C. albicans to hyphae-inducing signals.All the vam6Δ/Δ, vps41Δ/Δ, and ypt72Δ/Δ mutants showed decreased activation of TOR signaling and delayed hyphal initiation.Consistently, TOR pathway inhibitor rapamycin inhibited the hyphal initiation and elongation in the wild-type strain, which is consistence with previous results 28 .Overexpression of GTR1, upstream of the TOR pathway, restored the slow initiation caused by the disruption of VAM6.The effect of fragmented vacuoles on the TOR pathways activation may be due to the distribution of TORC1 complex on the surface of vacuoles membrane, as the kinase activity of TORC1 is activated by the small GTPase at the lysosome (vacuole) 54,55 .When there is no large vacuolar membrane surface, the interaction of TORC1 and EGO complex may be affected to some extent 56 .But to our surprise, overexpression of GTR1 partially recovered the function of TOR signaling in the vam6 null mutant.In S. cerevisiae, Vam6 protein is not only involved in the formation of the HOPS complex and mediates the tethering process for vacuole fusion, but also functions as a guanylate exchange factor that regulates the GDP-or GTP-binding status of Gtr1 protein 57 .The restoration effect of GTR1 overexpression in our experiments suggested that GTR1 activation may not be limited to the functional Vam6 but may also be regulated by other guanosine triphosphates or proteins, especially in the hyphae-inducing conditions, as there have been reported that leucyl-tRNA synthetase (LeuRS) Cdc60 could interact with Gtr1 to regulate the leucine-dependent TOR activation 58 .On the other hand, overexpression of GTR1 may elevate its low intrinsic GTPase activity and prompt the activation of TOR signaling 59 .Further studies on the regulation of TOR signaling under hyphae-induced conditions will provide a deeper understanding of the pathogenic mechanism of C. albicans.
Overexpression of GTR1 compensated for the reduced TOR activity as well as hyphal initiation and cell damage caused by hyphae, but it did not fully restore the filamentation defect in the vam6 null mutant penetrating to agar or solid organs, such as kidney and skin.In contrast, the disruption of VAC8, which encodes a gene required for vacuolar inheritance, resulted in slower germination and hyphae growth in liquid medium.To our surprise, vac8Δ/Δ also formed large vacuoles in hyphae when penetrating agar.For penetrating solid kidneys and skin, the vac8Δ/Δ mutant also showed no obvious defect, and its pathogenicity in vivo was significantly higher than that of the HOPScomplex-deficient mutants.The opposite phenotypes of GTR1 OE -vam6Δ/Δ and vac8Δ/Δ mutants suggests that the production of the HOPS-complex-mediated large vacuoles plays a more dominant role in maintaining C. albicans pathogenicity than hyphae initiation.The HOPS-complex-deficient mutants did not show significant difference in secretion and expression of virulence factors, so it was suggested that the large vacuoles may provide the mechanical support for hyphae penetrating the solid matter.In our study, the deficiency of vacuolar support is mainly manifested by the impaired hyphal invasion to the solid agars.With the decrease of agar concentration, the invasion zone of hyphae on solid agar was increased, which indirectly reflect the forces of hyphal penetration.When compared with the wildtype C. albicans invasion zones at the equivalent agar plates, the penetration deficiency of HOPS-complex-disrupted mutants in 0.5% agar were significantly smaller than that in 2% agar.These results suggest that the ability of C. albicans invading agar is mainly affected by the mechanical support provided by large vacuoles.Some studies have reported the driving forces and turgor pressure produced by vacuolar expansion.In Basidiobolus ranarum, the driving forces produced by enlarging vacuole pushes cytoplasm into developing conidia, which eventually break through the spore walls and disperse into the air 60 .In the appressorium cell of Magnaporthe grisea, large vacuoles were also required for generating the massive turgor pressure to invade plant.The turgor pressure could promote M. grisea to penetrate plant tissue via the infection peg, which indicated the large mechanical forces provided by vacuoles.The turgor pressure was derived from the accumulation of glycerol in large vacuoles 61 .In addition, plant vacuolar protein PIEZO could sense mechanical forces and modulate vacuole morphology 62 .Many studies indicate that vacuoles are indispensable for sensing and regulating mechanical forces in fungi.Our study mainly demonstrates the necessity of large vacuoles in C. albicans hyphae to penetrate solid agar and organs.However, the detection and modulation of the vacuolar turgor pressure in C. albicans remains to be further investigated.
More precise methods are needed for the determination of mechanical forces.To accurately investigate the forces exerted by hyphae, micro-fabrication approaches employ the elastomer polydimethylsiloxane (PDMS) as single-cell force sensors for fungal cells 25 .In addition, they found that filament buckling angle also reflects the response to resistive forces.However, no significant hyphal buckling was observed in hyphae induced by normal liquid or solid medium.The unobserved hyphal buckling indicates the limitation of PDMS in determining the mechanical penetration of individual cells, which cannot be accurately determined for slight penetration differences.In addition, with the development of fluorescent probes, N-BDP can be used to detect the turgor pressure and the tension of the hyphal plasma membrane by measuring the fluorescence lifetime.The wide synthesis and application of such probes will provide more convenient tools to detect the penetration forces 63 .
And, the advancement of novel techniques for single-cell force real-time detection will offer a more efficient approach to investigate the virulence of filamentous fungi.In addition to impaired mechanical forces, fragmented vacuoles may also affect other functions of normal vacuoles.Li et al. reported that deletion of VAM6 caused the defect of autophagy 26 .However, it has been reported that autophagy was not required for C. albicans yeast-to-hypha differentiation 64 .Dysfunction caused by fragmented vacuoles is not limited to autophagy.Li et al. also identified the role of VAM6 in the maintenance of mitochondria function under oxidative stress resistance 65,66 .The deletion of VAM6 attenuated the virulence in C. albicans.The phenotypes of shorted hyphae in liquid RPMI1640 medium and the smooth colonies with very short wrinkles on solid agar in the vam6 null mutant were similar to our data.The appearances of colonies in both the wild type and the vam6 null mutant on the solid Spider medium were consistence with ours as well.Moreover, their study focused primarily on the effects of VAM6 on autophagy, mitochondrial function, and response to oxidative stress, suggesting the functional diversity of vacuoles in C. albicans.However, comparing the functions of normal vacuoles and fragmented vacuoles one by one is challenging.Our results indicated that fragmented vacuoles did not influence the secretion of SAPs and the expression of virulence-related genes.Meanwhile, the membrane integrity and acidic compartments of small vacuoles was also demonstrated, which in turn partially ruled out the defects in the function of small vacuoles.Our results provide some evidence that large vacuoles produced by vacuolar fusion provide sufficient mechanical force supporting hyphal to penetrate the host solid tissues.Recovery of TOR signaling does not restore vacuolar morphology and pathogenicity, which further confirmed the importance of large vacuoles in maintaining C. albicans virulence.However, our study has some limitations in quantitatively assessing the relationship between vacuolar size and hyphal invasion.It would be beneficial to better understand the role of vacuoles in C. albicans pathogenicity by precisely controlling the movement of vacuoles to the tips of hyphae or by determining the correlation between vacuole size and hyphal mechanical forces.
During determining the in vivo virulence of C. albicans mutants, we also used the yeast-blocked EFG1 and CPH1 double-deleted mutant (efg1Δ/Δ cph1Δ/Δ), which showed normal vacuolar morphology in yeast-form cells in the hyphal-inducing medium (Supplementary Fig. 7).However, C57/BL6 mice infected with 5 × 10 5 CFU of efg1Δ/Δ cph1Δ/Δ mutant did not show any abnormal locomotion and death during systemic infection 67 .Compared with the yeast-blocked efg1Δ/Δ cph1Δ/Δ mutant, HOPS-complex-deficient mutants is more virulent.But our study indicates that in addition to secreting virulence factors, hyphae can also cause tissue damage through mechanical penetration, which was promoted by the large vacuoles located in the hyphae tubes and tips.The production of large vacuoles was relied on the HOPS-complex-mediated vacuolar fusion (Fig. 8).Our finding suggested that targeting vacuolar fusion or HOPS complex could be explored as a novel antifungal strategy to reduce damage to host tissues.

Ethics statement
All animal experiments were performed according to institutional guidelines and have been approved by the Committee on Ethics of Medicine, Naval Medical University.

Strain constructions
All strains and plasmids used in this study are listed in Supplementary Table 1.All primers used in this study are included in Supplementary Table 2.A detailed description of strain construction is included in Supplementary Methods.
Target gene deletions were performed using a transient CRISPR-Cas9 system as reported 68 .Plasmid pV1093 was used to amplify the CAS9 expression and sgRNA expression cassettes.Plasmids pMH01 and pMH02 with the recyclable Candida dubliniensis HIS1 marker and pNAT with the nourseothricin-resistance marker were used to amplify the deletion cassettes with the corresponding marker.The deletion cassette contains 80 bp homology sequences of the target ORF upstream and downstream regions.PCR products were then transformed into C. albicans SC5314 with HIS1 auxotrophic parental strain using the lithium acetate transformation method.The positive colonies were confirmed by colony PCR followed by genomic PCR.To validate the construction of our deletion mutants, one copy of the SC5314 allele of each target gene was reintroduced at the original HIS1 locus.The reintroduced fragment contains the whole target ORF, together with ~1000 bp of the target upstream and ~400 bp of the downstream region.The NAT1 marker amplified from pNAT was fused to the above-reintroduced fragment.
To construct the GFP-tagged strain, plasmid pCPC160 or pCPC158 was used to amplify the fragment containing marker and GFP, with the long primers homology to the upstream of the target gene, resulting in the N-terminal fused GFP to the target gene 69 .The two alleles of VAM6 were disrupted in the Yvc1-GFP 32 strain to obtain the strain Yvc1-GFP-vam6Δ/Δ.
To overexpress GTR1 in the vam6Δ/Δ null mutant, plasmid pJK1277 was linearized with BsrGI enzyme and then transformed into the vam6 null mutant screened by nourseothricin-resistance 70 .

Hyphal induction assays and imaging
Hyphal induction and then calcofluor white (CFW, Fluid analytics 18909) staining assay in liquid medium were carried out according to reported 71 .Overnight cultured strains were diluted to an OD 600 of 0.4 in RPMI1640 medium plus 10% FBS or Spider medium and were grown for 4 h at 37 °C.Strains were harvested, fixed with 4% formaldehyde for 15 min, stained with 0.2 mg/ml of CFW, and then resuspended in PBS.Stained strains were observed and photographed with 1.5-fold magnification on a Zeiss Axiovert 200 microscope with a 63× objective, or on a Leica Stellaris 8 STED scanning microscope with 40× waterimmersion objective.To quantify the length of hyphae, the distance from a mother yeast cell to its hyphal tip was analyzed by Image J (1.53e).At least 50 separate hyphae were evaluated.The number of clearly separated hyphae and their first and secondary branching from at least 25 fields of view was counted.
The elongation of hyphae was recorded by time-lapse phasecontrast scanning on the Zeiss Axiovert 200 microscope with a 40× objective.Strains were cultured in RPMI1640 plus 10% FBS medium in the cell chamber maintained at 37 °C.The images were collected for 50 time points, with one image every 2 min.A total of 15 planes were scanned for each record.Usually, the center plane 8 or 9 gave the ideal focus.The lengths of six clearly separated hyphae at each time point were measured using Image J.
For determination of the ratio of germination, C. albicans were cultured in RPMI1640 plus 10% FBS or Spider medium at 37 °C.The ratio of germinated cells to all the cells observed in the microscopic field was considered as the ratio of germination.In each field, approximate 50-100 fungal cells were observed under the microscope (EVOS xl, AMG) with a 40× objective.
Hyphal induction assays on solid medium were carried out according to previously reported 72 with some modifications.Overnight grown C. albicans strains were washed and adjusted to an OD 600 of 0.1 with RPMI1640 plus 10% FBS or Spider medium.A volume of 1 μl of each strain suspension was spotted on RPMI1640 plus 10% FBS or Spider solid medium.The plates were static incubated at 37 °C for 5 days.The top view or quarter edge of colonies were photographed by camera or inverted phase-contrast microscope (EVOS xl, AMG) with a 4× objective.To image the penetration of hyphae into agar, the colonies were vertically sliced across the center with the hyphae invading into agar for 0.5-1.0mm thickness sections, and the vertical sections were photographed under the microscope (EVOS xl, AMG) with a 4× objective.Different fields were recorded and jointed together to integrate to obtain a full view of the whole slice.The depth and width of hyphae invading into agar in the vertical section were analyzed by Image J. The diameter of the central region of the colony and the distance between the hyphal insertion and the edge of the central region were measured.Where indicated, rapamycin (Meilunbio; J0304A) or CaCl 2 were added into agar media before solidification, and the concentrations of agar were adjusted to 0.5% or 1%.

Biofilm formation and imaging
Biofilm growth was carried out according to previously reported 71 with appropriate modifications.Overnight cultured strains were inoculated to an OD 600 of 0.5 in 2 ml of RPMI1640 medium plus 10% FBS containing a 1.5 cm × 1.5 cm silicone square (Bentec Medical Inc., Woodland) in a 12-well plate (Costar).The plate was incubated at 37 °C for 90 min.After two washes with PBS, the silicone square was transferred to a fresh medium and incubated at 37 °C for 24 h to allow biofilm formation.The mature biofilms attached to the silicone were then washed and fixed with 4% formaldehyde and 2% glutaraldehyde in PBS.Fixed biofilms were stained overnight with Concanavalin A, Alexa Fluor 594 conjugate (Life Technologies) diluted to 25 μg/ml in PBS.Biofilms were washed once more in PBS to remove excess dyes, then transferred to glass scintillation vials and index-matched through subsequent passages through 50:50 PBS and methanol, 100% methanol, 50:50 methanol and methyl salicylate solution, and 100% methyl salicylate.Biofilms were then visualized using a slit-scan confocal optical unit on a Zeiss Axiovert 200 microscope with a Zeiss 40×/0.85NA oilimmersion objective.The apical and basal regions of the serial-focus image stack were set to span the inverted biofilm.Imaging processing, axial, and side-view projections were described as previously reported 73 .Image data were converted to 32-bit format in Image J, then processed using the Subtract Background function with a 50-pixel rolling ball radius, setting negative pixels to zero, reslicing, and selecting Max Intensity projection to produce side views.

Vacuolar membrane staining and imaging
C. albicans strains grown overnight were adjusted to an OD 600 of 0.5 in fresh YPD medium or RPMI1640 plus 10% FBS and allowed to grow for 90-120 min.Both yeast and hyphal forms of C. albicans strains were incubated with VacuRed (500 nM) for 10 min at 37 °C in a humidified incubator and washed with PBS three times before imaging.The VacuRed was excited by a 545 nm laser (14 µW) and fluorescence was collected between 590 nm and 670 nm.Images were acquired on a Leica Stellaris 8 STED scanning microscope (LAS X 4.6.1.27508)equipped with a white light laser.A 100× oil-immersion objective was employed, and the fluorophore emission was collected with Hybrid Detectors (HyD).The fluorescence of GFP was excited by a 488 nm laser and collected at 507 nm.
For measurement of vacuole diameter, all images were processed using LAS AF Lite software (3.3.0 10134).The fluorescence signal intensity was utilized to distinguish individual vacuoles, and the diameter of each vacuole was measured using the 'Draw scalebar' tool and annotated on the merged diagram.A total of 50 sets of diameter data were obtained for each sample, from which the mean and standard deviation were calculated.
For the imaging of the fusion process of vacuoles during hyphal growth, overnight cultured C. albicans SC5314 were adjusted to an OD 600 of 0.5 in fresh YPD medium.The fungal suspension was incubated at 30 °C with shaking for 4 h.About 5 × 10 6 CFU of C. albicans were added to a confocal dish with 5 ml of fresh RPMI1640 + 10% FBS medium and cultured statically at 37 °C for 1 h.Then, strains were stained with 500 nM VacuRed for 10 min and washed.Images were acquired on a Leica Stellaris 8 STED microscope every 30 s and processed using LAS AF Lite software (3.3.0 10134).
For the imaging of the integrity of vacuolar membrane stained by both VacuRed and quinacrine, overnight cultured C. albicans were adjusted to an OD 600 of 0.5 in fresh YPD medium.The fungal suspension was incubated at 30 °C with shaking for 4 h.Then, strains were stained with 500 nM VacuRed and 200 μM quinacrine (Sigma, Q3251) for 10 min and washed.Images were acquired on a Leica Stellaris 8 STED scanning microscope with a 100× oil-immersion objective.Fluorescence of quinacrine was excited by a 490 nm laser and collected at 525 nm.Images were processed using LAS AF Lite (3.3.0 10134).

HUVEC or macrophages co-cultured with C. albicans assay
HUVECs (ATCC® CRL-1730) were cultured in DMEM supplemented with 10% FBS, 100 U/ml penicillin, and 10 μg/ml streptomycin in a humidified 5% CO 2 incubator at 37 °C.Approximately 1 × 10 6 HUVECs were added to each well in a 12-well plate with 1 ml of DMEM medium.Later, 100 μl of C. albicans strains (1 × 10 7 CFU) were added to each well.The plates were placed at 37 °C in a humidified 5% CO 2 incubator for 6 h and 9 h.At each time point, 120 μl of the supernatant was measured by lactate dehydrogenase (LDH) Release Assay Kit (Beyotime, Catalog # C0017).The absorbance of each well was measured by a Thermo microplate reader at 490 nm.The absorbance used for calculation was subtracted from the background control well.The LDH release rate (%) was calculated by the absorbance of each sample divided by the absorbance of cells treated with LDH release agent.
ICR mice (female, 6-8 weeks) obtained from Bikaikeji Biotechnology Co., LTD were treated with cervical dislocation and cleaned with 75% ethanol.Each mouse was injected with 5 ml of cold PBS (containing 3% FBS).Peritoneal macrophages were collected by aspiration of the lavage fluid into a 5 ml syringe (again if necessary) and harvested by centrifugation at 160 g for 8 min.The cells were resuspended in DMEM medium and subsequently cultured in a 12-well plate with 10% FBS and 1% penicillin-streptomycin at 37 °C in a humidified 5% CO 2 incubator.The supernatant was discarded and the macrophages cells adhering to the wells were washed three times with PBS. 100 μl of C. albicans strains (1 × 10 7 CFU) and 1 ml of peritoneal murine macrophages (1 × 10 6 cells) were co-cultured for 3 h and 6 h, stained with 2 μl per well of 100 μg/ml of propidium iodide (PI, Meilunbio, MA0137), and incubated at 37 °C for 15 min in dark.Then the plate was photographed with a fluorescence microscope (Leica, DMLL-LED) with a 20× objective.Peritoneal murine macrophages in the absence of fungi were used as negative control.The percentage of PI-positive peritoneal murine macrophages was calculated by the number of red fluorescent dots divided by the total number of macrophages in the negative control.
For the imaging of GFP-fused Yvc1 during hyphal growth coincubated with HUVECs, HUVECs (1 × 10 6 cells) and C. albicans strains (1 × 10 6 CFU) were co-incubated in a confocal microscope plate with 2 ml of DMEM medium at 37 °C in a humidified 5% CO 2 incubator for 3 h.Images were acquired on a Leica Stellaris 8 STED scanning microscope with a 100× oil-immersion objective.The fluorescence of GFP was excited by a 488 nm laser and collected at 507 nm.Images were processed using LAS AF Lite (3.3.0 10134).

Mouse model of Candida infection
All mice were housed in a 12 h light/dark cycle room with appropriate temperature of 18-25 °C and relative humidity of 30-70%.Mice were given free access to food and water throughout the study.
ICR mice (female, 6-8 weeks) obtained from Bikaikeji Biotechnology Co., LTD were used for the disseminated candidiasis model.C. albicans wild type and mutant strains were washed, resuspended in sterile normal saline after culturing in YPD medium at 30 °C overnight, and then were adjusted to 8 × 10 6 cells/ml.A total of 20 mice for each group were systemic infected with 0.2 ml of C. albicans strain suspensions to get 1.6 × 10 6 CFU per mouse by intravenous administration via tail vein.The whole blood from 5 mice from each group was collected by the eyeball extraction method to detect metabolites, including urea and creatinine 5 days after fungal inoculation.The kidneys of five mice in each group were taken out 5 days after fungal inoculation to investigate the fungal burden and to make pathological sections with periodic acid-Schiff (PAS) staining.Hyphae invading the kidney were observed through an inverted phasecontrast microscope (EVOS xl, AMG) with a 40× objective.The remaining mice were monitored daily for 2-3 weeks, followed by fungal challenges.
C57BL/6 mice (female, 6-8 weeks) obtained from Leigen Biotechnology Co., LTD were used for the cutaneous candidiasis model.Mice were intraperitoneally injected with dexamethasone (Zhengzhou Zhuofeng, H41020055) 25 mg/kg once a day for 3 consecutive days to make immunosuppression in advance and anesthetized with 4% chloral hydrate intraperitoneally injected.To expose the back skin, mice's back hair was shaved and wiped thoroughly by applying Nair on the back, followed by cleaning with 75% ethanol, then the back skin was lightly stroked with 220 grits sandpaper to remove stratum corneum.C. albicans wild type and mutant strains were harvested after culturing in YPD medium at 30 °C overnight, washed, and resuspended in PBS to obtain a concentration of 4 × 10 9 CFU/ml.Exposed back skin of each mouse was infected with 50 µl of C. albicans suspension to reach 2 × 10 8 CFU per mouse.Five mice were used for each strain-challenging group.Mice were euthanized 3 days later.About 15 mm × 15 mm size of the back skins were removed.One piece from the removed skin was used to make pathological sections with PAS staining.Hyphae invading into skin were observed through an inverted phase-contrast microscope (EVOS xl, AMG) with a 40× objective.The rest of the removed skin was cut and ground, resuspended in normal saline, plated onto YPD medium with ten-fold dilutions and grown at 30 °C for 48 h.The number of survived colonies was counted to calculate the fungal burden.

Spot assay
Rapamycin was dissolved in DMSO, added to YPD medium, and used to prepare solid plates.Overnight C. albicans strains suspensions were adjusted to an OD 600 of 0.4 in YPD medium.Then each of the C. albicans strains was serial five-fold diluted in YPD to six concentration gradients.Each strain suspension was spotted orderly in line at a volume of 3 μl per spot on YPD solid medium containing different concentrations of rapamycin.The plates were incubated at 30 °C for 48 h and photographed.

Quantitative real-time RT-PCR
Briefly, to prepare samples for RNA extraction, overnight growth C. albicans SC5314 was inoculated into 10 ml of fresh YPD at an OD 600 of 0.4, and incubated at 30 °C for 1.5 h with shaking.Strains were harvested by centrifugation at 14,000 × g for 3 min in cold.For the detection of the gene expression level of strains co-cultured with HUVECs, HUVECs (1 × 10 7 cells) and C. albicans strains (1 × 10 7 CFU) were co-incubated in a 9 cm × 9 cm plate with 10 ml of DMEM medium at 37 °C in a humidified 5% CO 2 incubator for 1.5 h or 3 h.The strains with or without cells were then scraped off the plate with a cell scraper and harvested.RNA was isolated using a column fungal RNAout kit (KangLang, China), and cDNA was generated using the PrimeScript RT Master Mix kit (Takara Bio Inc., Japan).Real-time RT-PCR was carried out using the SYBR Premix Ex Taq kit (Takara Bio Inc.) in ABI Quant-Studio 3 RT-PCR 96-well with the following cycle conditions: preincubation step was 95 °C for 150 s; the amplification step was 95 °C for 5 s and 60 °C for 34 s, repeat for 60 cycles.The melting curve was completed with the following cycle conditions: 95 °C for 15 s, 65 °C for 60 s and 97 °C for 1 s with a rate of 0.1 °C/s.Three biological replicates were carried out and at least two parallel wells for each reaction were conducted.The results were compared with Actin-1 as an internal standard, and the 2 -(ΔΔCt) method was used to indicate the fold change of gene expression level.

Western blotting
Overnight cultured C. albicans strains suspensions were diluted to OD 600 of 1.0 and incubated in SD medium for 4 h.Ammonium sulfate or arginine or equal volume of ddH 2 O was added and incubated for 1 h at 30 °C.The strains were harvested at 4 °C, resuspended in 500 μl of protein lysis buffer (50 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM EDTA, 10% glycerol, 0.2% Nonidet P-40 substitute, 1 M glycerophosphate, 1 M NaF, 0.05 M Na-ortho vanadate, 1 M Pnpp, 10 mM PMSF, 100 mM DTT, Protease Inhibitor cocktail), transferred into screw-cap tubes with the addition of 500 μl of acid-washed glass beads, and homogenized by a bead-beater for 6 cycles of 45 s, with 3 min cooling on ice in each cycle.Then the tubes were centrifuged at 10,000 × g for 10 min at 4 °C and supernatant was transferred to a new tube.The protein concentration was measured with a BCA protein assay kit (Beyotime; P0011).Equal amounts of protein (30 µg) were separated by 12% SDS-PAGE and then transferred onto PVDF membranes.After blocking with 5% skimmed dry milk powder dissolved in TBS containing 0.1% Tween-20 for 2 h at room temperature, the membranes were incubated with primary antibodies against P-S6 (anti-phospho (S/T) Akt substrate rabbit polyclonal antibody, Cell Signaling Technology, catalog # 9611, 1:1000 dilution), total S6 (anti-S6 sheep polyclonal antibody R&D, catalog # AF5436, 1:1000 dilution), or the loading control H3 (Anti-histone H3 rabbit polyclonal antibody, Cell Signaling Technology, catalog # 4499,1:1000 dilution) overnight at 4 °C.Then, the membranes were incubated with secondary antibodies (Peroxidase-conjugated Affinipure goat Anti-Rabbit, Proteintech, catalog # SA00001-2, 1:2000 dilution; Peroxidase-conjugated Affinipure Rabbit Anti-Sheep, Proteintech, catalog # SA00001-16, 1:2000 dilution) for 2 h at room temperature and the probed protein was visualized on the Tanon ABL X5 Chemiluminescence Imaging System with AllDoc_X software.H3 was used as the loading control.

SAPs secretion assay
C. albicans strains grown overnight were adjusted to an OD 600 of 0.3 in PBS.Each strain suspension was spotted at a volume of 1 μl per spot on solid YCB-BSA medium.The plates were incubated at 30 °C for 48 h and photographed.The size of each halo was measured by Image J.

Statistics and reproducibility
All experiments were performed at least three times.Representative images are shown.The lengths of hyphae were measured using Image J version 1.53e.Statistical tests were conducted with GraphPad Prism software version 8.3.0 (538) or version 9.0.0 (121).Unpaired two-tailed Student's t-test was used to analyze the differences between two groups.Survival curves were compared using the Log-rank (Mantel-Cox) test.Comparison between the elongation rates of hyphae was analyzed with mixed linear model by SPSS Statistics 24.P-value < 0.05 was considered statistically significant.

Reporting summary
Further information on research design is available in the Nature Portfolio Reporting Summary linked to this article.

Fig. 1 |
Fig. 1 | The disruption of VAM6 results in defective filamentous growth in C. albicans.C. albicans were cultured in RPMI1640 + 10% FBS or Spider medium at 37 °C for 4 h and stained with calcoflour white.a The hyphal morphology of C. albicans strains in liquid RPMI1640 + 10% FBS medium.Scale bars = 50 μm.b The hyphal length in the wild-type strain and vam6Δ/Δ mutant in RPMI1640 + 10% FBS or Spider medium.Box plots indicate median (middle line), 25th, 75th percentile (box), and minimum and maximum value as well as outliers (single points); n = 50 hyphae.c The number of clearly separated hyphae and their first and secondary branching in RPMI1640 + 10% FBS medium was counted.Data were presented as mean ± SD; n = 45 hyphae in SC5314, n = 27 hyphae in vam6Δ/Δ.d The dynamics of hyphal growth in C. albicans strains in liquid RPMI1640 + 10% FBS medium.The lengths of hyphal elongation were recorded for 120 min upon the initiation of

Fig. 2 |
Fig. 2 | The deficiency in HOPS complex abolishes vacuole fusion and impairs filamentous growth in C. albicans.a Identified process of HOPS-complexmediated vacuole fusion in fungal cells.b Imaging of vacuole membrane stained by VacuRed.Scale bars = 5 μm.c Measurement of vacuolar diameters in C. albicans.Scale bars = 1 μm (lower panel).d Imaging of vacuole compartment stained by quinacrine.Scale bars = 7.5 μm. e Transmission electron microscope images in C. albicans.The yellow circles represent vacuoles (V).Scale bars = 1 μm.f The colocalization of Gfp-tagged Vam6, Vps41 and Ypt72 with VacuRed.Scale bars = 5 μm.g Imaging of GFP-tagged Yvc1 with VacuRed.The yellow arrows represent the site of fusion.Scale bars = 5 μm.h The hyphal morphology in C. albicans.Scale bars = 50 μm.i The hyphal length in C. albicans.Box plots indicate median (middle line), 25th, 75th percentile (box) and minimum and maximum value as well as outliers (single points).n = 50 hyphae.j The model of top view of hyphal colony on solid agar.The diameter of center part without hyphae was defined as C. The distance of visible hyphal part scattering around the central region were defined as P. k, l The hyphal morphology on solid media.The C and P values were quantified by Image J. Data were presented as mean ± SD. n = 3 colonies.Scale bars = 1000 μm.mThe model of vertical section of hyphal colony on solid agar.Width (W), the width of colony ranges under the surface of agar; Depth (D), the maximum distance of hyphae penetrating into agar from the surface of agar.n Vertical sections of hyphal colonies on solid media were observed by microscopy.The W and D values (mm) were quantified by Image J. Scale bars = 1 mm.Data were presented as mean ± SD. n = 3 colonies.Two-tailed unpaired t-test (i, k, l, n).The representative images shown are from 3 biological repeats (b-g, k, l, n).Source data are provided as a Source Data file.

Fig. 3 |
Fig. 3 | The disruption of HOPS complex reduces pathogenesis in C. albicans.a The LDH release rate of HUVECs co-incubated with C. albicans (MOI = 1).Three biological replicates were carried out.n = 3 samples.b Murine peritoneal macrophages were co-incubated with C. albicans (MOI = 1) for 3 h, stained with propyl iodide (PI).The yellow arrows in the rectangle boxes zoomed in represent the nucleus of C. albicans which were not counted as PI-positive macrophages.Scale bars = 50 μm.c The percentage of PI-positive murine peritoneal macrophages cells co-incubated with strains.n = 5 fields.d The survival of mice infected with C. albicans.n = 10 mice.e, f The concentrations of urea (e) and creatinine (f) in the serum of mice were determined 5 days after fungal inoculation.n = 5 mice.g The fungal burden in kidneys of mice were determined 5 days after fungal inoculation.n = 5 mice.h The kidneys of mice were taken out 5 days after fungal inoculation and made pathological sections with PAS staining.Scale bars = 20 μm.i The hyphal length in kidneys was measured by Image J. n = 30 hyphae.j The experiment process for cutaneous candidiasis model.k The exposed back skin with fungal-infected damage on day 7. l The fungal burden in damaged skin of mice were determined 3 days after fungal inoculation.n = 5 mice.m The pathological images of infected skin stained by PAS.The dimension of skin damage was quantified by the maximum depth of penetrated hyphae measured by Image J. Scale bars = 100 μm.n The hyphal length in damaged skin was measured by Image J. n = 20 hyphae.Data were presented as mean ± SD (a, c, e, f, g, l).Box plots indicate median (middle line), 25th, 75th percentile (box), and minimum and maximum value as well as outliers (single points) (i, n).Log-rank (Mantel-Cox) test (d), two-tailed unpaired t-test (a, c, e, f, g, i, l, n).Source data are provided as a Source Data file.

Fig. 4 |
Fig. 4 | The HOPS complex is required for the activation of TOR pathway.a Rapamycin sensitivity examined by spot assay.C. albicans strains were serial 5-fold diluted, spotted on YPD agar containing rapamycin and cultured at 30 °C for 48 h.b The phosphorylation of RPS6 protein (P-S6) examined by western blotting.The representative images shown are from 3 biological repeats.c The hyphal morphology of C. albicans strains on solid medium.Three biological replicates were carried out.One of the representative images are shown.Width (W) and depth (D) (mm) were quantified by Image J. n = 5 colonies.Scale bars = 1 mm.d Relative expression of GTR1 and TOR1 in GTR1 OE -vam6Δ/Δ mutants compared to SC5314 examined by quantitative real-time RT-PCR.n = 3 samples.e Rapamycin sensitivity examined by spot assay.f The ratio of germination in C. albicans cultured in hyphal-inducing liquid media at 37 °C for 0.5 h.The ratio of germinated strains to all the strains observed in the microscopic field (approximately 50-100 fungal cells in each field under the 40× objective) was considered as the ratio of germination.n = 3 fields.g The hyphal length quantified by Image J. n = 50 hyphae.h The hyphal morphology of C. albicans strains on solid medium.Three biological replicates were carried out.One of the representative images are shown.Width (W) and depth (D) (mm) were quantified by Image J. Scale bars = 1 mm.n = 3 colonies.Data were presented as mean ± SD (c, d, f, h).Box plots indicate median (middle line), 25th, 75th percentile (box) and minimum and maximum value as well as outliers (single points) (g).Two-tailed unpaired t-test (c, d, f, g, h).Source data are provided as a Source Data file.

Fig. 5 |
Fig. 5 | The deficiency in HOPS complex leads to reduced mechanical penetration of hyphae.a Vacuoles in hyphae of C. albicans SC5314 cultured in liquid RPMI1640 + 10% FBS medium for 90 min and solid Spider media for 48 h.Scale bars = 5 μm.b Imaging of Yvc1-GFP strains in hyphae sliced from Spider agar.Scale bars = 10 μm.c Vacuoles stained by VacuRed in hyphae scraped from Spider agar.Scale bars = 5 μm.d The fusion process of vacuoles during hyphal growth in C. albicans.SC5314 were cultured in liquid RPMI1640 + 10% FBS medium at 37 °C for 1 h, and stained with VacuRed.The vacuoles in hyphae were observed every 30 s.A 90 s time period is shown.Scale bars = 5 μm.The representative images shown are from 3 biological repeats (a-d).e, f Vertical sections of hyphal colonies on solid agar.Width (W) and depth (D) (mm) were quantified by Image J. n = 4 colonies.

Fig. 6 |
Fig. 6 | Hyphal penetration forces supported by large vacuoles are required for the virulence in C. albicans.a Imaging of vacuole membrane stained by VacuRed in C. albicans cultured in YPD medium at 30 °C for 90 min.Three biological replicates were carried out.One of the representative images are shown.Scale bars = 5 μm.b The percentage of propyl iodide (PI)-positive murine peritoneal macrophages co-incubated with C. albicans for 6 h (MOI = 1).n = 5 fields.c The LDH release rate of HUVECs co-incubated with C. albicans for 9 h (MOI = 1).n = 3 samples.d The survival percentage of mice infected with C. albicans.n = 10 mice.e The fungal burden in kidneys of mice were determined 5 days after fungal inoculation.n = 5 mice.f The kidneys of mice were taken out 5 days after fungal inoculation and made pathological sections with PAS staining.Scale bars = 100 μm.g The hyphal length in kidneys was measured by Image J. n = 20 hyphae.h The exposed back skin with fungal-infected damage on day 7. i The fungal burdens in damaged skin of mice were determined 3 days after fungal inoculation.n = 5 mice.j The pathological images of infected skin stained by PAS.The dimension of skin damage was quantified by the maximum depth of penetrated hyphae measured by Image J. Scale bars = 100 μm.k The hyphal length in damaged skin was measured by Image J. n = 20 hyphae.Data were presented as mean ± SD (b, c, e, i).Box plots indicate median (middle line), 25th, 75th percentile (box), and minimum and maximum values as well as outliers (single points) (g, k).Log-rank (Mantel-Cox) test (d), two-tailed unpaired t-test (b, c, e, g, i, k).Source data are provided as a Source Data file.

Fig. 7 |
Fig. 7 | The vac8 null mutant with large vacuoles showed normal ability to penetrate solid media and slightly decreased virulence.a The ratio of germination in C. albicans induced for 40 min.n = 6 fields.b, c The hyphal length induced for 2 h and 4 h.n = 50 hyphae.d, e Vertical sections of hyphal colonies on solid agar.Colonel width (W) and depth (D) (mm) were quantified by Image J. n = 3 colonies.Scale bars = 1 mm.f, g Vacuoles in hyphae cultured in liquid RPMI1640 + 10% FBS or solid Spider medium.Scale bars = 7.5 μm in (f), 2.5 μm (upper), and 10 μm (lower) in (g).The representative images shown are from 3 biological replicates (d, f, g).h Murine peritoneal macrophages were co-incubated with C. albicans (MOI = 1) for 3 h and stained with PI.Scale bars = 50 μm.i, j The percentage of PI-positive murine macrophages co-incubated with fungi (MOI = 1).n = 5 fields.k The survival percentage of mice infected with C. albicans.n = 10 mice.l The fungal burden in kidneys.n = 5 mice.m The kidneys of mice were made pathological sections with PAS staining.Scale bars = 100 μm.n The hyphal length in kidneys was measured by Image J. n = 35 hyphae.o The exposed back skin with fungal-infected damage on day 7. p The fungal burden in skin of mice.n = 5 mice.q The pathological images of infected skin stained by PAS.The dimension of skin damage was quantified by the maximum depth of penetrated hyphae measured by Image J. Scale bars = 100 μm.r The hyphal length in damaged skin was measured by Image J. n = 25 hyphae.Data were presented as mean ± SD (a, e, i, j, l, p).Box plots indicate median (middle line), 25th, 75th percentile (box), and minimum and maximum value as well as outliers (single points) (b, c, n, r).Log-rank (Mantel-Cox) test (k), two-tailed unpaired t-test (a-c, e, i, j, l, n, p, r).Source data are provided as a Source Data file.

Fig. 8 |
Fig.8| The role of HOPS-complex-mediated vacuolar fusion in hyphae formation.The HOPS complex, composed of Vam6, Vps41, Class C proteins, and Rab GTPase Ypt72 regulates the tethering of vacuoles in the process of vacuolar fusion.Since the TORC1 complex is located on the vacuolar membranes, large vacuoles generated by fusion are facilitators of efficient activation of TOR signaling, which also promotes signaling transduction during hyphal initiation.In addition, large vacuoles in hyphae would contribute C. albicans to penetrating through the host cells by maintaining mechanical support forces.