Table 2 Comparison of ‘medium’ and ‘high’ method using single-cell samples.

From: Quantitative single-cell proteomics as a tool to characterize cellular hierarchies

  Medium (300 ms) High (500 ms)
Protein IDs 2,076 1,790
Peptide IDs 11,111 8,826
PSMs 127,196 89,939
PSM rate (%) 24 25.4
Median s/n in single-cell channels 5.4 8.75
Mean protein IDs per file 1,287 999
Filtered cells 302 255
Filtered proteins 1,986 1,498
Mean protein IDs per cell 1,076 712.3
Missing values (%) 45.8 52.45