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Chemodivergent manganese-catalyzed C–H activation: modular synthesis of fluorogenic probes


Bioorthogonal late-stage diversification of amino acids and peptides bears enormous potential for drug discovery and molecular imaging. Despite major accomplishments, these strategies largely rely on traditional, lengthy prefunctionalization methods, heavily involving precious transition-metal catalysis. Herein, we report on a resource-economical manganese(I)-catalyzed C–H fluorescent labeling of structurally complex peptides ensured by direct alkynylation and alkenylation manifolds. This modular strategy sets the stage for unraveling structure-activity relationships between structurally discrete fluorophores towards the rational design of BODIPY fluorogenic probes for real-time analysis of immune cell function.


The fluidity of cell membranes is an essential microenvironmental feature associated with many biological processes, including the transport of biomolecules, activity of membrane-bound proteins, protein–protein interactions, and metabolic reactions1. It is not surprising, therefore, that the dysregulation of membrane fluidity has been linked to cellular abnormalities in a variety of diseases2,3. In this regard, imaging studies to reveal how the composition of cell membranes changes in real-time are of key importance, both in biomedical studies as well as in the translation of new therapeutics. Fluorogenic molecular rotors have been recognized as attractive tools for sensing changes in the viscosity and polarity of live cells4. In the past few years, environmentally-sensitive fluorophores have been developed to image in vivo cell-specific events associated with infection, inflammation, and cancer5,6,7,8,9,10. However, this approach largely involves elements of substrate prefunctionalization. As a consequence, new approaches for late-stage fluorogenic labeling of biomolecules are required to assemble molecular probes that enable real-time imaging of membrane fluidity as direct reporters of cell function. The position- and chemo-selective modification of biologically relevant compounds is in high demand to program late-stage diversification of biomolecules with new spectral and biological capabilities11,12,13. This linch-pin approach allows to stitch different chemical moieties together to access highly functional entities with unique properties14. A major challenge in peptide functionalization is represented by the need for predictable, robust, and mild methods. Until recently, the modification of amino acids and peptides has largely relied on classical condensations, (cyclo)additions, or metal-catalyzed cross-couplings with two prefunctionalized substrates15,16,17,18. During the last decade, C–H activation has become an increasingly viable tool for molecular syntheses19,20,21,22,23. Enormous efforts have been devoted to establishing C–H functionalizations of amino acids with the toxic 4d transition metals palladium and ruthenium24,25,26,27,28,29, whilst Earth-abundant 3d transition metal catalysis continues to be scarce30,31,32,33. Manganese complexes typically demonstrate low toxicity, thus its utilization in C–H functionalization is highly desirable. While the viability of manganese(I)-catalysis for C–H activation has been documented34,35,36,37, late-stage diversifications of structurally complex peptides towards molecular imaging have thus far unfortunately proven elusive. CD8+ T cells are an effector subset of lymphocytes that represent the main line of defense of the adaptative immune system against infections and cancer38,39,40. Importantly, recent studies showed evidence that the composition of the plasma membrane of CD8+ T cells is directly related to their cytotoxic capability41,42. Since the biological activity of T cells can be indicative of how the host immune system is responding to disease, we focussed our design on the construction of functional BODIPY reporters of CD8+ T cell function.

Thus, we devise a manganese-catalyzed linch-pin strategy to stitch peptides with BODIPY fluorophores featuring excellent photophysical properties. Notably, the nature of the molecular linkage is identified as a key design element to modulate the fluorescent properties. This approach sets the stage for facilitating structure-activity relationship studies of BODIPY fluorogenic probes as well as the construction of unique functional reporters of cell activity. Herein, we exploit the environmentally-sensitive fluorogenicity of BODIPY chemotypes to image changes in the composition of the cell membrane of CD8+ T cells as direct indicators of their functional state.

Results and discussion

Our strategy for a divergent assembly point for the preparation of fluorescent peptides with tunable optical properties identified internal bromoalkynes35 and terminal alkynes36 as the substrates. We envisioned that, by employing these architectures, we could gain access to fluorescent imaging probes, in which the phenyl-BODIPY fluorescent core would be stitched to the indole-moiety of the tryptophan amino acid via a linear alkynyl or a bent alkenyl spacer, while at the same time extending the conjugate π-system to fine-tune the fluorogenic behavior. We envisioned that this linkage would not only alter the fluorescent properties of the peptide but also render fluorescent molecular rotors (Fig. 1a). To reduce our hypothesis into practice, we exploited an insertion/β-elimination manifold, via the combination of KOAc and BPh3, that enabled, under exceedingly mild, racemization-free reaction conditions, efficient alkynylation to selectively deliver BODIPY-labeled amino acid 2 with a linear linkage (Fig. 1b and Supplementary Tables 1 and 2). The beneficial assets of the Lewis-acidic BPh3 are attributed to ensuring an efficient β-bromide elimination35. In sharp contrast, (1-Ad)CO2H as additive facilitated an insertion/protodemetalation manifold with terminal BODIPY-alkyne B2, providing the bent spacer (Fig. 1b). The acid additive is proposed to enable efficient carboxylate-assisted C–H activation while accelerating the protodemetalation43,44,45.

Fig. 1: Divergent and modular assembly of fluorogenic probes via Earth-abundant manganese(I)-catalyzed C–H activation.
figure 1

a A versatile approach towards diverse fluorogenic probes. b Selected optimization findings for the utilization of bromoalkyne B1 and terminal alkyne B2 to furnish linear alkynylated and bent alkenylated BODIPY amino acid imaging probes. 2-py, 2-pyridyl; SAR, structure–activity relationship; (1-Ad)CO2H, 1-adamantanecarboxylic acid; DCE, 1,2-dichloroethane; PivOH, pivalic acid.

With the optimal reaction conditions for late-stage fluorescent-labeling in hand, we explored the generality of our alkynylation regime in a broad range of small peptides (Fig. 2). Gratifyingly, the reaction conditions tolerated various tryptophan derivatives, delivering the desired fluorogenic amino acid derivatives 2, 6, and 7 with remarkable efficacy. Moreover, our approach proved viable to BODIPY-alkyne B3 decorated with aryl groups at the alpha pyrrole positions to bathochromically shift the emission wavelength of the thus-obtained amino acid 9. The robustness of our strategy is asserted with the preparation of various dipeptides which were selectively labeled without epimerization.

Fig. 2: Manganese-catalyzed fluorescent labeling of small peptides via late-stage C–H stitching.
figure 2

Synthesis of peptides 618 featuring a linear linker between the BODIPY fluorophore and the tryptophan amino acid via C–H alkynylation.

Encouraged by the versatility of the manganese(I)-catalysis, we next investigated the late-stage diversification of complex peptides under the alkenylation manifold (Fig. 3). In this regard, various terminal BODIPY-alkynes (B) bearing substituents on the fluorescent core were efficiently converted to the desired labelled amino acid derivatives 3, and 2025 with complete E-selectivity. Importantly, the manganese(I)-catalyzed C–H activation even occurred at physiological temperature of 37 °C. Furthermore, the reaction time could be significantly reduced to only 100 min, when using a flow setup connected to a cartridge filled with the metal scavenger, QuadraPure™ IDA. Thereby, the residual manganese level was reduced to 6.1 ppm, as determined by inductively coupled plasma mass spectrometry (ICP-MS) analysis. Likewise, we provided access to the free fluorescent amino acid 22 as a building block for the synthesis of larger fluorogenic peptides. Various di- and tripeptides with unprotected, -OH, -CO2H, and -NH2-free amino acids, such as tryptophan, tyrosine, serine, threonine, and lysine, were converted in a site- and chemoselective fashion. Also, fluorescent free-C-terminus dipeptide 34 was obtained in a positional selective fashion. Triggered by the robustness of our alkenylation regime, we examined whether more complex peptides would be amenable to this site-selective labeling process. To this end, tripeptides 4 were site-, chemo-, and diastereo-E-selectively converted. The robustness of our alkenylation regime was demonstrated by the efficient synthesis of the fluorescent dipeptide 28 and tripeptide 38 at 60 °C. Tryptophan derivatives containing lipophilic tails at the N-terminus where also subjected to the labeling process to afford modulated lipophilic rotors that could be used as membrane fluidity probes (vide infra). Thus, the linch-pin approach stitched lauric, palmitic, stearic, and cis-oleic acid together onto tryptophans, leading to E-bent fluorogenic probes 4144. Moreover, the traceless removal of the N-pyridyl group was accomplished by a selective methylation/ hydrogenation protocol giving rise to NH-free tryptophan-containing fluorogenic amino acid 45.

Fig. 3: Manganese-catalyzed fluorescent labeling of small peptides via late-stage C–H stitching.
figure 3

Synthesis of peptides 2045 featuring a bent linker between the BODIPY fluorophore and the tryptophan amino acid via late-stage C–H alkenylation.

Inspired by the remarkable versatility of our manganese(I)-catalyzed alkenylation, we became attracted to manganese(I) catalysis for the labeling of more challenging peptidic structures. To our delight, the linch-pin approach proved robust for the selective and efficient labeling of tetra- and pentapeptides 4753, featuring sensitive cystine and unprotected tryptophan and OH-free serine (Fig. 4). Likewise, the late-stage diversification of conformationally rigid cyclic peptides was realized, enabling access to brevianamide F (cyclo[Trppy-Pro]) and fellutanine A (cyclo[Trppy-Trp]) diketopiperazine fluorescent analogs 5457 (Fig. 4). Cyclic pentapeptides were also selectively labeled, giving access to fluorescent peptides 58 and 59 with potentially improved resistance to proteolytic degradation (Fig. 4). These findings assert the utility of our manganese(I) catalysis to directly access proteolytically-stable fluorescent peptides for bioimaging studies, without relying on lengthy de novo syntheses based on pre-functionalized building blocks.

Fig. 4: Manganese-catalyzed fluorescent labeling of complex peptides via late-stage C–H stitching.
figure 4

Synthesis of peptides 4753 featuring a bent linker between the BODIPY fluorophore and the tryptophan via C–H stitching, late-stage diversification of natural product derivatives featuring the 2,5-diketopiperazine core (5457) and synthesis of fluorescent cyclic peptides via C–H alkenylation.

CD8+ T cells are key mediators of the immune response against pathogens and cancer cells. Once T cells are activated, they exert their killing activity through the production and release of cytotoxic cytokines and enzymes. Within the last decades, immunotherapies have emerged as an effective treatment to invigorate the activity of CD8+ T cells against tumors46. However, immunotherapies show limited success and high variability between patients, which highlights the need for chemical tools that can provide direct readouts of immune response to accelerate the design of more efficient treatments47. The cytotoxic ability of CD8+ T cells has been recently linked to lipid metabolism41,42. Different studies report that increases of cholesterol—an essential component of lipid bilayer fluidity—in the plasma membrane are directly associated with rapid cell proliferation and enhanced effector function. Given the suitability of our synthetic platform for the rapid optimization of fluorophores, we decided to explore whether BODIPY fluorogenic probes would monitor changes in the membrane fluidity of CD8+ T cells and behave as fluorescent reporters of cellular activity.

First, we examined the Trp(BODIPY) analogs 2, 3, and 60 as membrane viscosity sensors (Fig. 5a). All three analogs exhibited similar excitation (~501 nm) and green emission (~515 nm) maxima wavelengths (Supplementary Figs. 46). To examine their response to changes in fluidity, we first measured their fluorescence emission in water-glycerol mixtures, where the derivative 3, including a π-conjugated double bond bridge that could favor the charge transfer between the indole and phenyl-BODIPY groups, showed the best fluorogenic character among all the derivatives (Fig. 5b). The weakest response was observed for derivative 2, which features a triple bond linkage that could lead to increased system rigidification and a reduction of intramolecular charge transfer. We quantified the viscosity sensitivity coefficients for all compounds and observed that compound 3 displayed values around 0.7, being among the most sensitive fluorescent rotors reported to date48,49. Next, to facilitate the anchoring of the BODIPY reporter to the plasma membrane of live cells, we conjugated compound 3 to fatty acids of different lengths and saturation degrees (Fig. 5c). We examined their fluorescence emission in liposomes containing phosphatidylcholine and cholesterol, mimicking the cell membrane microenvironments. Interestingly, the lauric acid derivative 41, which had the shortest fatty acid chain (i.e., 12 carbon atoms) exhibited the strongest fluorogenic behavior with over 80-fold increase in emission (Fig. 5c). In view of these results, we performed confocal microscopy experiments to compare the staining of compound 41 in liposomes containing different amounts of cholesterol. As shown in Fig. 5d, compound 41 exhibited turn-on fluorescence emission in response to the cholesterol content.

Fig. 5: Evaluation of fluidity-sensitive fluorogenic BODIPY probes.
figure 5

a Spectral properties of the BODIPY amino acids 2, 3, and 60. λexc: 450 nm. [] Measured in EtOH, [] measured in glycerol:H2O (6:4) with fluorescein in basic EtOH as a standard, [§] measured in glycerol:H2O mixtures with increasing viscosity. b Fluorescence bar plots displaying the fluorescence fold increase in 0–60% glycerol in water (left) and fluorescence emission in 60% glycerol-water (right) of amino acids 2, 3, and 60 (25 µM), λexc: 450 nm. Inset) Pictograms of compound 3 under UV excitation in PBS (left) and in liposome suspensions (right). c Fluorescence emission bar plot of lipid-fluorophore conjugates 4144 (1 µM) after incubation in phosphatidylcholine (PC): cholesterol liposome suspensions (gray) and in PBS (white), λexc: 450 nm. d Fluorescence confocal microscopy images of compound 41 (1 µM, green) after incubation with DMPC-based liposomes containing increasing amounts of cholesterol. Scale bar: 10 µm. In all panels, data presented as means ± SEM from experiments performed at least in triplicate. Fluorescence spectra of compound 41 (1 µM) in cholesterol-containing liposomes (green) and in PBS (black). Data presented as means ± SEM (n = 4) for emission in presence of liposomes and (n = 12) for emission in PBS. P values obtained from ONE-ANOVA tests with multiple comparisons. ε, molar extinction coefficient; lipos., liposomes; chol., cholesterol.

Encouraged by the sensitivity of compound 41 to monitor changes in membrane fluidity, we next evaluated its utility as a fluorescent probe for identifying small molecule drugs that activate T cells and regulate the cholesterol content in their membranes. We employed a flow cytometry platform to screen a collection of commercially available regulators of lipid metabolism (Fig. 6a). Jurkat T cells were cultured using a cell proliferation cocktail (i.e., anti-CD3, anti-CD28, and IL-2) and treated with drugs or vehicle for 12 h before imaging with probe 41. Among all drugs tested, cells treated with the Acyl-CoA:cholesterol acyltransferase inhibitor avasimibe showed the highest fluorescence emission (Fig. 6b). Notably, avasimibe has been reported in combination with anti-PD1 immunotherapies for the treatment of cancer. We also examined whether compound 41 was able to detect changes in the activity of CD8+ T cells that were freshly isolated from human peripheral blood. Fluorescence microscopy images of compound 41 in human CD8+ T cells exhibited bright staining of the cell membrane in avasimibe-treated cells but not in untreated CD8+ T cells (Fig. 6c). Moreover, we performed a detailed live-cell analysis by flow cytometry to observe that the fluorescence signal of compound 41 was significantly higher in avasimibe-treated activated CD8+ T cells than in naïve CD8+ T cells (Fig. 6d and Supplementary Fig. 8). Finally, we confirmed the functional state of CD8+ T cells by measuring the expression of receptor markers that are directly associated with T cell activity and assessed the response of human CD8+ T cells using antibody-based readouts (Supplementary Fig. 7). Specifically, avasimibe-treated cells showed a slight increase in the levels of PD-1 and a significant decrease in the levels CD62L, which are both indicative of CD8+ T cell activation state (Fig. 6d and Supplementary Fig. 9). Altogether, these results highlight the utility of compound 41 as a simple and cost-effective turn-on probe to detect subtle changes in the cholesterol content and activation state of live human CD8+ T cells under physiological conditions.

Fig. 6: Probe 41 enables fluorescence-based screening of small molecule modulators of CD8+ T cells.
figure 6

a Schematic illustration of our fluorescence-based screening to detect cholesterol fluctuations in T cells using compound 41. b Quantification of the fluorescence emission of Jurkat T cells after incubation with different small molecules and staining with compound 41 (1 µM, λexc/em: 488/525 nm). Data presented as means + SEM (n = 6). c Fluorescence confocal microscopy images of activated CD8+ T cells with avasimibe (30 µM) or without avasimibe. Cells were stained with compound 41 (1 µM, green) and Hoechst 33342 (blue, 7 µM) (λexc/em: 405/450 nm (Hoechst), 488/525 nm (4)). White arrows point at the plasma membrane localization of probe 41. Scale bar: 10 µm. d Quantification of the fluorescence intensity (n = 7) and the percentage (n = 6) of 41-stained CD8+ T cells under different activation conditions. Flow cytometry analysis of the CD8+ T cells markers PD-1 (no avasimibe: n = 6, IL-2 activation: n = 7, IL-2 activation + avasimibe: n = 5) and CD62L (no avasimibe/IL2-activation: n = 6, IL-2 activation+avasimibe: n = 9) before and after treatment with avasimibe (30 µM). In all panels, data presented as means ± SEM from experiments performed at least in triplicate. P values obtained from unpaired two-tailed t tests.

In summary, we have developed a modular linch-pin strategy for the stereo-divergent manganese(I)-catalyzed C–H labeling of structurally complex peptides with BODIPY probes. The modular and robust nature of our approach sets the stage for expedient structure–activity relationship studies of fluorogenic peptides. We validated the Earth-abundant manganese(I) catalysis by providing access to highly sensitive molecular rotors with the ability to sense changes in the composition of immune cell membranes. We identified a fluidity-sensitive probe, which emits bright fluorescence in response to cholesterol found in cell membranes, and utilized it to establish a rapid fluorescence-based screening platform for the identification of small molecule modulators of CD8+ T cells. Overall, our modular and divergent C–H activation strategy will establish expedient avenues in the development of activatable fluorophores to image cell function in real-time and physiological conditions.


General procedure A: manganese-catalyzed C–H alkynylation of peptides

A suspension of peptide 4 (0.10 mmol, 1.00 equiv), BODIPY-bromoalkyne B (0.11 mmol, 1.1 equiv), MnBr(CO)5 (2.7 mg, 10 mol %), KOAc (19.6 mg, 2.0 equiv), and BPh3 (50 µL, 0.01 m in 1,4-dioxane, 0.5 mol %) in 1,4-dioxane (1.0 mL) was stirred at 90 °C for 24 h. After cooling to ambient temperature, CH2Cl2 (10 mL) was added and the mixture was concentrated in vacuo. Purification by column chromatography on silica gel afforded the desired products.

General procedure B: manganese-catalyzed C–H hydroarylation of peptides

A suspension of peptide 4 (0.10 mmol, 1.0 equiv), BODIPY-alkyne B (0.11-0.20 mmol, 1.1 -2.0 equiv), MnBr(CO)5 (5.5 mg, 20 mol %), and (1-Ad)CO2H (7.2 mg, 40 mol %) in 1,4-dioxane (1.0 mL) was stirred at 100 °C for 24 h. After cooling to ambient temperature, CH2Cl2 (10 mL) was added and the mixture was concentrated in vacuo. Purification by column chromatography on silica gel afforded the desired products.

Flow cytometry analysis

Dyes were reconstituted at 10 mM in DMSO. 105 cells were stained with compound 41 (1 μM) in HEPES-NaCl containing 0.1% BSA for 1 h at r.t. prior to staining with antibodies. Cells were washed with HEPES-NaCl followed by staining with antihuman PD-1-PE (1:100, 10 μg mL−1), antihuman CD62L-PE/Cy7 (1:200, 10 μg mL−1), antihuman CD39-APC (1:200, 5 μg mL−1), and antihuman CD8-PerCP/Cy5.5 (1:200, 0.4 μg mL−1) in HEPES-NaCl containing 0.1% BSA and 1% FcR block for 20 min on ice. Cells were washed at 300 g, 5 min in HEPES-NaCl prior to staining with 25 nM Annexin V-PB in HEPES-NaCl containing 0.1% BSA and 2 mM CaCl2. Fluorescence emission was measured on a 5 L LSR flow cytometer. Excitation sources/emission filters used: Annexin V-PB (355 nm, 450/50 nm), 41 (488 nm, 510/20 nm), PD1-PE (561 nm, 582/15 nm), CD62L-PE/Cy7 (561 nm, 780/60 nm), CD8-PerCP/Cy5.5 (488 nm, 710/50 nm), CD39-APC (647 nm, 670/14 nm).

Fluorescence confocal microscopy

Confocal imaging was performed in a TCS Leica SP8 confocal laser scanning microscope. Prior to imaging, cells were stained with compound 41 (1 μM) for 1 h at r.t. in HEPES-NaCl containing 0.1% BSA. Cells were further counterstained with the nuclear counterstain Hoechst 33342 (3 μM) for 10 min at r.t. Excitation/emission wavelengths: Hoechst 33342 (355 nm, 450/50 nm), 41 (488 nm, 520/40 nm). Images were processed with ImageJ.

Statistics and reproducibility

Statistical differences were analyzed two-sided unpaired t tests using Graphpad software. Independent experiments were performed at least three times, unless otherwise mentioned.

Reporting summary

Further information on research design is available in the Nature Research Reporting Summary linked to this article.

Data availability

The authors declare that the data supporting the findings of this study are available within the paper and its Supplementary Information files. Source data are provided with this paper. All other requests for materials and information should be addressed to the corresponding authors. Source data are provided with this paper.


  1. Bernardino de la Serna, J., Schütz, G. J., Eggeling, C. & Cebecauer, M. There is no simple model of the plasma membrane organization. Front. Cell Dev. Biol. 4, 106 (2016).

    PubMed  PubMed Central  Article  Google Scholar 

  2. Kuter, K. et al. Adaptation within mitochondrial oxidative phosphorylation supercomplexes and membrane viscosity during degeneration of dopaminergic neurons in an animal model of early Parkinson’s disease. Biochim. Biophys. Acta, Mol. Basis Dis. 1862, 741–753 (2016).

    CAS  Article  Google Scholar 

  3. Martín, V. et al. Lipid alterations in lipid rafts from Alzheimer’s Disease human brain cortex. J. Alzheimers Dis. 19, 489–502 (2010).

    Article  CAS  Google Scholar 

  4. Yang, Z. et al. Macro-/micro-environment-sensitive chemosensing and biological imaging. Chem. Soc. Rev. 43, 4563–4601 (2014).

    CAS  PubMed  Article  PubMed Central  Google Scholar 

  5. Subiros-Funosas, R. et al. Fluorogenic Trp(redBODIPY) cyclopeptide targeting keratin 1 for imaging of aggressive carcinomas. Chem. Sci. 11, 1368–1374 (2020).

    CAS  Article  Google Scholar 

  6. Fernandez, A., Thompson, E. J., Pollard, J. W., Kitamura, T. & Vendrell, M. A fluorescent activatable AND-gate chemokine CCL2 enables in vivo detection of metastasis-associated macrophages. Angew. Chem. Int. Ed. 58, 16894–16898 (2019).

    CAS  Article  Google Scholar 

  7. Benson, S. et al. SCOTfluors: small, conjugatable, orthogonal, and tunable fluorophores for in vivo imaging of cell metabolism. Angew. Chem. Int. Ed. 58, 6911–6915 (2019).

    CAS  Article  Google Scholar 

  8. Patalag, L. J., Ho, L. P., Jones, P. G. & Werz, D. B. Ethylene-bridged Oligo-BODIPYs: access to intramolecular J-aggregates and superfluorophores. J. Am. Chem. Soc. 139, 15104–15113 (2017).

    CAS  PubMed  Article  PubMed Central  Google Scholar 

  9. Fernandez, A. et al. Chemical modulation of in vivo macrophage function with subpopulation-specific fluorescent prodrug conjugates. ACS Cent. Sci. 3, 995–1005 (2017).

    CAS  PubMed  PubMed Central  Article  Google Scholar 

  10. Mendive-Tapia, L. et al. Spacer-free BODIPY fluorogens in antimicrobial peptides for direct imaging of fungal infection in human tissue. Nat. Commun. 7, 10940 (2016).

    ADS  CAS  PubMed  PubMed Central  Article  Google Scholar 

  11. Tong, H.-R., Li, B., Li, G., He, G. & Chen, G. Postassembly modifications of peptides via metal-catalyzed C−H functionalization. CCS Chem. 2, 1797–1820 (2020).

    Google Scholar 

  12. Wang, W., Lorion, M. M., Shah, J., Kapdi, A. R. & Ackermann, L. Late-stage peptide diversification by position-selective C−H activation. Angew. Chem. Int. Ed. 57, 14700–14717 (2018).

    CAS  Article  Google Scholar 

  13. Noisier, A. F. M. & Brimble, M. A. C–H functionalization in the synthesis of amino acids and peptides. Chem. Rev. 114, 8775–8806 (2014).

    CAS  PubMed  Article  PubMed Central  Google Scholar 

  14. Ohata, J., Martin, S. C. & Ball, Z. T. Metal-mediated functionalization of natural peptides and proteins: panning for bioconjugation gold. Angew. Chem. Int. Ed. 58, 6176–6199 (2019).

    CAS  Article  Google Scholar 

  15. Zhang, C., Vinogradova, E. V., Spokoyny, A. M., Buchwald, S. L. & Pentelute, B. L. Arylation chemistry for bioconjugation. Angew. Chem. Int. Ed. 58, 4810–4839 (2019).

    CAS  Article  Google Scholar 

  16. Hoyt, E. A., Cal, P. M. S. D., Oliveira, B. L. & Bernardes, G. J. L. Contemporary approaches to site-selective protein modification. Nat. Rev. Chem. 3, 147–171 (2019).

    CAS  Article  Google Scholar 

  17. Jbara, M., Maity, S. K. & Brik, A. Palladium in the chemical synthesis and modification of proteins. Angew. Chem. Int. Ed. 56, 10644–10655 (2017).

    CAS  Article  Google Scholar 

  18. deGruyter, J. N., Malins, L. R. & Baran, P. S. Residue-specific peptide modification: a chemist’s guide. Biochemistry 56, 3863–3873 (2017).

    CAS  PubMed  PubMed Central  Article  Google Scholar 

  19. Rej, S., Ano, Y. & Chatani, N. Bidentate directing groups: an efficient tool in c–h bond functionalization chemistry for the expedient construction of C–C bonds. Chem. Rev. 120, 1788–1887 (2020).

    CAS  PubMed  Article  PubMed Central  Google Scholar 

  20. Meng, G. et al. Achieving site-selectivity for C–H activation processes based on distance and geometry: a carpenter’s approach. J. Am. Chem. Soc. 142, 10571–10591 (2020).

    CAS  PubMed  Article  PubMed Central  Google Scholar 

  21. Blakemore, D. C. et al. Organic synthesis provides opportunities to transform drug discovery. Nat. Chem. 10, 383–394 (2018).

    CAS  PubMed  Article  PubMed Central  Google Scholar 

  22. Park, Y., Kim, Y. & Chang, S. Transition metal-catalyzed C–H amination: scope, mechanism, and applications. Chem. Rev. 117, 9247–9301 (2017).

    CAS  PubMed  Article  PubMed Central  Google Scholar 

  23. Gensch, T., Hopkinson, M. N., Glorius, F. & Wencel-Delord, J. Mild metal-catalyzed C–H activation: examples and concepts. Chem. Soc. Rev. 45, 2900–2936 (2016).

    CAS  PubMed  Article  PubMed Central  Google Scholar 

  24. Zhang, X. et al. A general strategy for synthesis of cyclophane-braced peptide macrocycles via palladium-catalysed intramolecular sp3 C−H arylation. Nat. Chem. 10, 540–548 (2018).

    CAS  PubMed  Article  PubMed Central  Google Scholar 

  25. Tang, J. et al. Peptide-guided functionalization and macrocyclization of bioactive peptidosulfonamides by Pd(II)-catalyzed late-stage C–H activation. Nat. Commun. 9, 3383 (2018).

    ADS  PubMed  PubMed Central  Article  CAS  Google Scholar 

  26. Schischko, A., Ren, H., Kaplaneris, N. & Ackermann, L. Bioorthogonal diversification of peptides through selective ruthenium(II)-catalyzed C–H activation. Angew. Chem. Int. Ed. 56, 1576–1580 (2017).

    CAS  Article  Google Scholar 

  27. Liu, T., Qiao, J. X., Poss, M. A. & Yu, J.-Q. Palladium(II)-catalyzed site-selective C(sp3)−H alkynylation of oligopeptides: a linchpin approach for oligopeptide–drug Conjugation. Angew. Chem. Int. Ed. 56, 10924–10927 (2017).

    CAS  Article  Google Scholar 

  28. Liu, Y.-J. et al. Divergent and stereoselective synthesis of β-silyl-α-amino acids through palladium-catalyzed intermolecular silylation of unactivated primary and secondary C−H bonds. Angew. Chem. Int. Ed. 55, 13859–13862 (2016).

    CAS  Article  Google Scholar 

  29. Chen, G. et al. Ligand-Enabled β-C–H arylation of α-amino acids using a simple and practical auxiliary. J. Am. Chem. Soc. 137, 3338–3351 (2015).

    CAS  PubMed  PubMed Central  Article  Google Scholar 

  30. Scamp, R. J., deRamon, E., Paulson, E. K., Miller, S. J. & Ellman, J. A. Cobalt(III)-catalyzed C−H amidation of dehydroalanine for the site-selective structural diversification of thiostrepton. Angew. Chem. Int. Ed. 59, 890–895 (2020).

    CAS  Article  Google Scholar 

  31. Lorion, M. M., Kaplaneris, N., Son, J., Kuniyil, R. & Ackermann, L. Late-stage peptide diversification through cobalt-catalyzed C−H activation: sequential multicatalysis for stapled peptides. Angew. Chem. Int. Ed. 58, 1684–1688 (2019).

    CAS  Article  Google Scholar 

  32. Kaplaneris, N. et al. Late-stage diversification through manganese-catalyzed C−H activation: access to acyclic, hybrid, and stapled peptides. Angew. Chem. Int. Ed. 58, 3476–3480 (2019).

    CAS  Article  Google Scholar 

  33. Gandeepan, P. et al. 3d Transition metals for C–H activation. Chem. Rev. 119, 2192–2452 (2019).

    CAS  PubMed  Article  PubMed Central  Google Scholar 

  34. Hu, Y., Zhou, B. & Wang, C. Inert C–H bond transformations enabled by organometallic manganese catalysis. Acc. Chem. Res. 51, 816–827 (2018).

    CAS  PubMed  Article  PubMed Central  Google Scholar 

  35. Ruan, Z., Sauermann, N., Manoni, E. & Ackermann, L. Manganese-catalyzed C−H alkynylation: expedient peptide synthesis and modification. Angew. Chem. Int. Ed. 56, 3172–3176 (2017).

    CAS  Article  Google Scholar 

  36. Shi, L., Zhong, X., She, H., Lei, Z. & Li, F. Manganese catalyzed C–H functionalization of indoles with alkynes to synthesize bis/trisubstituted indolylalkenes and carbazoles: the acid is the key to control selectivity. Chem. Commun. 51, 7136–7139 (2015).

    CAS  Article  Google Scholar 

  37. Kuninobu, Y., Nishina, Y., Takeuchi, T. & Takai, K. Manganese-catalyzed insertion of aldehydes into a C-H bond. Angew. Chem. Int. Ed. 46, 6518–6520 (2007).

    CAS  Article  Google Scholar 

  38. van der Leun, A. M., Thommen, D. S. & Schumacher, T. N. CD8+ T cell states in human cancer: insights from single-cell analysis. Nat. Rev. Cancer 20, 218–232 (2020).

    PubMed  PubMed Central  Article  CAS  Google Scholar 

  39. Farhood, B., Najafi, M. & Mortezaee, K. CD8+ cytotoxic T lymphocytes in cancer immunotherapy: a review. J. Cell. Physiol. 234, 8509–8521 (2019).

    CAS  PubMed  Article  PubMed Central  Google Scholar 

  40. Zhang, N. & Bevan, M. J. CD8+ T cells: foot soldiers of the immune system. Immunity 35, 161–168 (2011).

    CAS  PubMed  PubMed Central  Article  Google Scholar 

  41. Yin, Z. et al. Targeting T cell metabolism in the tumor microenvironment: an anti-cancer therapeutic strategy. J. Exp. Clin. Cancer Res 38, 403 (2019).

    PubMed  PubMed Central  Article  Google Scholar 

  42. Yang, W. et al. Potentiating the antitumour response of CD8+ T cells by modulating cholesterol metabolism. Nature 531, 651–655 (2016).

    ADS  CAS  PubMed  PubMed Central  Article  Google Scholar 

  43. Hammarback, L. A., Robinson, A., Lynam, J. M. & Fairlamb, I. J. S. Mechanistic insight into catalytic redox-neutral C–H bond activation involving manganese(I) carbonyls: catalyst activation, turnover, and deactivation pathways reveal an intricate network of steps. J. Am. Chem. Soc. 141, 2316–2328 (2019).

    CAS  PubMed  Article  PubMed Central  Google Scholar 

  44. Hammarback, L. A., Robinson, A., Lynam, J. M. & Fairlamb, I. J. S. Delineating the critical role of acid additives in Mn-catalysed C–H bond functionalisation processes. Chem. Commun. 55, 3211–3214 (2019).

    CAS  Article  Google Scholar 

  45. Ackermann, L. Carboxylate-assisted transition-metal-catalyzed C−H bond functionalizations: mechanism and scope. Chem. Rev. 111, 1315–1345 (2011).

    CAS  PubMed  Article  PubMed Central  Google Scholar 

  46. Ribas, A. & Wolchok, J. D. Cancer immunotherapy using checkpoint blockade. Science 359, 1350–1355 (2018).

    ADS  CAS  PubMed  PubMed Central  Article  Google Scholar 

  47. Binnewies, M. et al. Understanding the tumor immune microenvironment (TIME) for effective therapy. Nat. Med. 24, 541–550 (2018).

    CAS  PubMed  PubMed Central  Article  Google Scholar 

  48. Zhou, F. et al. Molecular rotors as fluorescent viscosity sensors: molecular design, polarity sensitivity, dipole moments changes, screening solvents, and deactivation channel of the excited states. Eur. J. Org. Chem. 2011, 4773–4787 (2011).

    CAS  Article  Google Scholar 

  49. Hsu, Y.-P. et al. Fluorogenic D-amino acids enable real-time monitoring of peptidoglycan biosynthesis and high-throughput transpeptidation assays. Nat. Chem. 11, 335–341 (2019).

    CAS  PubMed  PubMed Central  Article  Google Scholar 

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Generous support by the DFG (Gottfried-Wilhelm-Leibniz Prize to L.A. and SPP1807), and the Onassis Foundation (fellowship to N.K.) is gratefully acknowledged. N.D.B. acknowledges funding from OPTIMA (EP/L016559/1), L. A. and M.V. acknowledge funding from ERC Consolidator Grants (307535, 771443 respectively).


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Conceptualization, L.A.; Methodology, J.S. and N.K.; Investigation, N.K., J.S., L.M.T., A.K., N.D.B. and I. M.; Writing—Original Draft, N.K.; Writing—Review & Editing, N.K., L.M.T., M.V. and L.A.; Funding Acquisition, M.V. and L.A.; Resources, M.V. and L.A.; Supervision, L.A.

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Kaplaneris, N., Son, J., Mendive-Tapia, L. et al. Chemodivergent manganese-catalyzed C–H activation: modular synthesis of fluorogenic probes. Nat Commun 12, 3389 (2021).

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