TCR α chains (TRA) were sequenced from the same RNA samples as used for RNA sequencing (compare Fig. 8). P: patient; HC: healthy control. Heatmaps present clone fractions, i.e. the proportions of clones using TRAV10–TRAJ17 (a) and TRAV10–TRAJ24 (b) of all clones in total data. Clones are clustered based on CDR3 sequence.