Dot plots demonstrating the expression levels (normalized read counts) of nine T cell-related genes showing significant differences in expression (**p < 0.01) between NT1 patients and controls either after stimulation with NA175–189 or POMT1675-689 peptides (compare Fig. 6). Differentially expressed genes were identified using edgeR, based on a test analogous to Fisher’s exact test. The paired method was used for comparisons, calculating 2-sided p-values and adjusting for multiple testing using BH correction. The lines indicate paired data of two strong responders, NT1 patients P003 and P015.