Australia’s 2019–2020 ‘Black Summer’ bushfires burnt more than 8 million hectares of vegetation across the south-east of the continent, an event unprecedented in the last 200 years. Here we report the impacts of these fires on vascular plant species and communities. Using a map of the fires generated from remotely sensed hotspot data we show that, across 11 Australian bioregions, 17 major native vegetation groups were severely burnt, and up to 67–83% of globally significant rainforests and eucalypt forests and woodlands. Based on geocoded species occurrence data we estimate that >50% of known populations or ranges of 816 native vascular plant species were burnt during the fires, including more than 100 species with geographic ranges more than 500 km across. Habitat and fire response data show that most affected species are resilient to fire. However, the massive biogeographic, demographic and taxonomic breadth of impacts of the 2019–2020 fires may leave some ecosystems, particularly relictual Gondwanan rainforests, susceptible to regeneration failure and landscape-scale decline.
There is emerging evidence from ecosystems worldwide that catastrophic events such as extreme drought and large bushfires can push terrestrial ecosystems past tipping points that result in abrupt ecosystem change1,2. Given the impact of human-driven climate change on the frequency and intensity of these events there is a need to quantify their effects on plant and animal communities3 as they unfold. During the spring and summer of 2019–2020 south-eastern Australia experienced a severe bushfire season (the ‘Black Summer’) during which millions of hectares of natural vegetation along the eastern coast4, much of which had already been exposed to prolonged drought and record high temperatures (Supplementary Fig. 1a, b), were burnt. The area burned was almost an order of magnitude larger than other major global fires of the past decade5. Given the magnitude of this event we now need to identify and prioritise conservation and recovery actions across the fire-affected areas.
In this paper, we quantify the biogeographic and taxonomic impact of the 2019–2020 bushfires on vascular plant taxa and associated vegetation types across the south-east of the Australian mainland using a continent-wide fire layer and geocoded species occurrence data. Our findings show that the megafires extensively burnt a broad range of vegetation communities, including 72–83% of rainforests, eucalypt forests and woodlands, and shrublands and heathlands within individual subcontinental-scale bioregions. Importantly, the megafires occurred within globally significant biodiversity hotspots with high richness and endemism across important plant groups (e.g., Proteaceae6, eucalypts), including Gondwanan and subtropical rainforest species. Our assessment estimates >800 vascular plants had >50% of their populations or ranges burn. Although trait analysis reveals that most of the plants affected are likely fire resilient, the results show potentially important effects on the demography and viability of many plant species across multiple taxonomic groups.
Results and discussion
Extent of fires in vegetation communities
We developed a continent-wide fire layer based on Digital Earth Australia remotely sensed historical hotspot data gridded at a 2.5 km resolution over the period 1 July 2019 to 11 February 2020 (Fig. 1a; see ‘Methods’). Based on this layer we estimate that some 200 major fires burnt through 10.4 million hectares (Mha; ca. 25.7 million acres) of land in south-eastern Australia (Fig. 1b) until extinguished or brought under control in mid-February 2020. The fires progressed from north to south and grew most rapidly between September 2019 and January 2020 (Supplementary Fig. 2). Very large fires occur regularly in south-eastern Australia, but the aggregate spatial extent of the Black Summer bushfires in the states of Victoria and New South Wales (NSW) doubles major fire events of recent decades (all ca. 0.5–5 Mha; Supplementary Data 1), and even the 1851 Victorian fires of ‘Black Thursday’ (ca. 5 Mha). A significant feature of the event was the massive size of individual fires: eleven exceeded 0.1 Mha (i.e., 100,000 ha) and seven exceeded 0.40 Mha (ca. 1 million acres; Fig. 1b). Most megafires (here defined as >0.1 Mha) arose following the merging of multiple, independent large fires. Another six major fires (0.050–0.099 Mha) and many smaller fires also occurred across the region (Fig. 1b). The largest two megafires in northern NSW formed a complex approximately 380 km long that covered 2.66 Mha (6.57 million acres) (Fig. 1b), ranking as one of the largest contiguous fires ever recorded globally.
Approximately three-quarters of burnt areas occurred within remnant wooded vegetation (Fig. 2a, b). Among broad vegetation types based on Australian Major Vegetation Groups (MVG; see Table 1)7, eucalypt forests and woodlands (7.34 Mha) were most affected, but large areas of rainforests and vine thickets (0.33 Mha; Fig. 2C), shrublands and heathlands (0.22 Mha) and other forest and woodland ecosystems (0.25 Mha) were also burnt (Table 1). The biogeographic extent of the Black Summer fires is revealed by the fact that these broad vegetation types were impacted across the eleven south-eastern Australian bioregions (IBRA bioregions8) that occur within the study area (Fig. 1b and Supplementary Table 1). Among these, coastal and near-coastal bioregions (NSW North Coast, Sydney Basin, South East Corner and New England Tablelands) had the highest percentage of these vegetation types burn (PFT), including 4.40 Mha (PFT = 59%) of eucalypt forests and woodlands, 0.25 Mha (PFT = 59%) of rainforest and vine thickets and 0.18 Mha (PFT = 69%) of shrublands and heathlands (Table 1). In some bioregions PFT exceed 75%, notably for rainforests in the New England Tablelands and the South East Corner of NSW (Fig. 1b and Supplementary Table 1). The remaining burnt areas mainly consisted of cleared or non-native vegetation (2.06 Mha).
Our data also indicate that hotspot temperature varied significantly within all major fires (Fig. 1b). Almost half of all grid cells (46%) contained a very high or high relative fire hotspot temperature (TR; see ‘Methods’). These often occurred along the western edges of the megafires, particularly in northern and central NSW (Fig. 1b). Conversely, unburnt areas >5000 ha in size were detected inside all megafires (Fig. 1b), usually surrounded by large areas of lower fire temperature. Analysis of a spatial impact metric, IH, based on the estimated percentage of area in very high and high relative fire temperature categories (TR > 0.50), predicts that 17 Australian Major Vegetation Groups7 were severely affected, suffering from both extensive fires (PFT > 50%) and relatively high fire temperatures (IH > 25%, Table 1) in one or more bioregions. The most geographically extensive of these include Eucalypt Tall Open Forests (1.14 Mha across five bioregions), Eucalypt Open Forests (2.0 Mha across three bioregions), Eucalypt Woodland (0.39 Mha in one bioregion), Rainforests and Vine Thickets (0.22 Mha across three bioregions) and heathlands (0.16 Mha across four bioregions; Table 1). Again, coastal and near-coastal bioregions were most affected: here 10 MVGs each had >50% of their total area burn, and 15 experienced widespread hot fires (IH > 25%) in at least one bioregion (Table 1). Satellite images clearly demonstrate the dramatic landscape-level ‘browning’ that followed the Black Summer fires in these areas, with the loss of most of the wooded canopy leaving only a mosaic of smaller unburnt areas (Fig. 2d).
The scale of the fires and the breadth of vegetation types affected during the 2019–2020 fire season has implications for biodiversity conservation both in Australia and globally. Many of these ecosystems comprise a globally significant biodiversity hotspot9,10 with high richness, rarity, endemism and phylodiversity evident among the Proteaceae6, Asteraceae11, conifers12, eucalypts13, bryophytes14, and other plant groups15,16. The region also contains cool-temperate Gondwanan relictual and subtropical rainforest species that have suffered extensive clearing in past decades9 and today have highly restricted, fragmented ranges17. They support diverse assemblages of rare or threatened fauna that are also suffering ongoing demographic decline18.
Impacts on vascular plant taxa
We quantified the impact of the Black Summer fires on native vascular plant taxa within the south-east Australian mainland using spatial occurrence data from >9000 species downloaded from the Australasian Virtual Herbarium19. Estimates of the proportion of populations or geographic distributions burnt (PF) were developed based on unique specimen location records (PFSR), specimen location records binned to a 2.5 x 2.5 km raster grid to reduce oversampling bias (PFBR), and for species with ≥10 unique location records, ranges constructed from maximum-entropy (MaxEnt)-based species distribution models (PFSDM). We adopted the conservative approach of using the maximum value of all available PF estimates (PFM) as our estimate of fire impact for individual taxa, thus representing an upper limit of the number of taxa impacted (see ‘Methods’). We used the criterion of PFM > 0.50 to identify highly fire-impacted taxa (i.e., >50% of populations or ranges burnt).
Our data indicate that 816 vascular plant species in mainland south-eastern Australia were highly impacted by the Black Summer fires (Supplementary Data 2), of which 325 and 173 were >75% (PFM > 0.75) and >90% burnt (PFM > 0.90), respectively. All known populations of an estimated 116 species (14% of the total) burnt, which is more than double the number of plant species endemic to the British Isles. Among the 816 species, support for PFM estimates were strong for 80% of taxa (n = 649 species) with at least two of PFSR, PFBR or PFSDM exceeding the PF > 0.50 criterion for inclusion. The remaining taxa were included solely based on either PFSR (n = 58), PFBR (n = 24) or PFSDM (n = 85); in most cases alternative PF estimates were just below the 0.50 threshold (Supplementary Data 2).
The size of the fires is reflected in both the diversity of plant families (n = 76) and life forms affected. Taxa not found in rainforests (RF-) comprised 88% of the flora (n = 716 species; Fig. 2e), among which Myrtaceae (n = 124 species including 65 Eucalyptus spp.), Fabaceae (n = 104 including 50 Acacia spp.), Proteaceae, Orchidaceae, Asteraceae and Rutaceae were most speciose (43–71 taxa each; Fig. 2e). These taxa occur in a range of habitats, but we estimate that at least 89% are predominantly found either in sclerophyll forest and woodland (n = 462) or heathland or shrubland (n = 119) or in both (n = 54). Most of the remainder occur in swamps and non-woody vegetation (Supplementary Data 2). Among predominantly rainforest, semi-rainforest and rainforest margin species (RF++, RF+ and RF, respectively), orchids and members of the Apocynaceae, Solanaceae and Lamiaceae were also diverse (Fig. 2e). The presence of ancient Gondwanan rainforest lineages (e.g., Argophyllaceae, Cunoniaceae, Elaeocarpaceae, Lauraceae, Proteaceae, Trimeniaceae and Winteraceae; Fig. 2e) also support initial fears20 that the conservation of relict Gondwanan rainforest taxa might be threatened by the Black Summer fires. Notably, however, rainforest taxa (RF++) comprise only n = 28 species (3% of the total), of which 24 are endemic to the study area (Fig. 2e). Semi-rainforest and rainforest margin taxa, the majority of which are also found in wet sclerophyll forests, contribute an additional 72 taxa.
The most impacted life forms were dominated by ground- and understory-layer shrubs, with low or prostrate (<1 m tall), medium (1–3 m) and tall forms (>3–7 m tall, including mallee eucalypts), comprising 62% (n = 504 species) of all taxa with PFM > 0.50 (Fig. 2f). Of the remainder shorter trees (7–20 m), perennial non-geophytic forbs, geophytes and graminoids each comprised around 7% of the total (Fig. 2f). Most life forms were represented in all major habitat types, apart from annual species, geophytic forbs and taller trees (>35 m), which were almost absent from rainforests, and epiphytes and climbers, which were prevalent in, or entirely restricted to them (Supplementary Table 2). Notwithstanding these minor differences, the fires clearly impacted a broad range of species that contribute to both floristic diversity and habitat heterogeneity of forests and woodlands on local to bioregional scales. These characteristics underpin crucial ecosystem services that include biomass production and carbon sequestration21,22, surface-atmosphere interactions23 and the provision of foods and habitat for animal assemblages24,25,26, and transformational changes in these processes are likely to be of great importance in the wake of the fires.
Implications for conservation biogeography
To understand the implications of the Black Summer fires for conservation at broader biogeographical scales27 we investigated relationships among plant range size, species traits and the location and extent of the Black Summer fires. First, we determined the maximum geographic range extent (RET) of all vascular plant taxa endemic to the study area and with PFM > 50% based on specimen records (n = 700 species). These data (Fig. 3a) reveal a strong positive skew (Skewness = 1.66, Shapiro-Wilk normality test W = 0.803, P < 0.001) towards range-restricted species: 14% (n = 98) had extremely (RET < 10 km) or very small ranges (RET = 10–25 km) and a further 143 (20%) had ranges of 25–100 km. The presence of a triangular relationship between RET and PFM and in particular a strong inverse linear relationship (P < 0.001) at the 0.90 quantile (see Supplementary Notes) shows that, among impacted flora, rare, endemic species were more likely to suffer burning across most or all of their ranges. Indeed, extremely and very range-restricted species experienced fire over an average of 90–95% of their ranges compared with 57–60% for the most widespread species (RET > 750 km; Fig. 3b; Supplementary Notes). The presence of significant variation in PFM among 8 increasing RET scale classes (Kruskal–Wallis rank-sum test χ2 = 291.4, df = 7, P < 0.001; Fig. 3b) further supports this conclusion.
Analysis of variation in RET also indicate significant differences in range extent across life form categories (Fig. 3c; Kruskal–Wallis rank-sum test χ2 = 32.2, df = 11, P < 0.001), with epiphytes and climbers and perennial graminoids tending to have larger ranges than shrubs, low trees and geophytic forbs. The relationship between grouped RET size classes and life form categories (Supplementary Table 3 and Supplementary Notes) also shows strong contingency (χ2 = 42.1, df = 15, P < 0.001) between these variables, with medium and low shrubs more likely to have narrow endemic ranges (<25 km) and/or less likely to have moderate (100–500 km) to large ranges (>500 km; Fig. 3c and Supplementary Notes). These data are broadly consistent with prior studies28 that show a prevalence of species with small and threatened ranges among shrub-rich eastern Australian plant families (e.g., Myrtaceae, Fabaceae, Lamiaceae, Proteaceae, Rutaceae and Ericaceae).
Mapping of burnt populations of endemic taxa with very small to extremely small ranges (RET < 25 km) shows that most were concentrated in a small number of impact hotspots from far southern Queensland to south-east NSW, notably in the Border Ranges, Washpool-Gibraltar region of northern NSW, the Wollemi-Blue Mountains area west of Sydney and isolated ranges in southern NSW (Fig. 4a). Remaining unburnt refugia for these taxa are now small and disjunct, the most species-rich of which appears to lie inside Blue Mountains National Park (Fig. 4a). Range-restricted taxa (RET = 25–100 km) were similarly affected but had more numerous and larger impact hotspots and refugia (Supplementary Fig. 3a). These patterns clearly demonstrate the emergent biodiversity implications of megafires that collectively exceed the size of local species’ ranges, span multiple bioregions, and fall within areas of high plant diversity and endemism. In contrast, the large number and extent of unburnt refugia for very widespread (Fig. 4b) and moderately widespread taxa (Supplementary Fig. 3b) despite the size of associated burnt areas reflects their generally smaller PFM values (50–75%, Fig. 3b) and indicates a higher level of resilience to fire events of this scale.
Rainforest taxa were burnt in five main north-eastern NSW richness hotspots (Fig. 4c), three of which lie inside the 2.66 Mha Northern Rivers-Mid North megafire complex (Fig. 1b). Concentrations of burnt taxa occurred within the Main Range, Nightcap Range, and Gibraltar-Washpool regions, which together comprise a vital part of the World Heritage listed Gondwanan Rainforests of Australia29. Unburnt refugia containing these species now primarily occur in the Springbrook-Lamington-Mt Jerusalem-Nightcap region, some of New England National Park and the Barrington Tops (Fig. 4c). Notably rich areas of burnt semi-rainforest and rainforest margin species occurred further south in NSW (Fig. 4d). While rainforest and semi-rainforest species appeared to have generally larger range extents than other taxa (analysis of variance F = 4.7; df = 3, 696; P = 0.003; mean RET of RF+ and RF- species differ at the P < 0.01 level, see Supplementary Notes) and had a significantly smaller proportion of these burn (Kruskal–Wallis rank-sum test χ2 = 24.5, df = 3, P < 0.001; Fig. 2g), the small size and disjunct distribution of these refugia is concerning, and their protection and management may now be a priority. Species-rich unburnt refugia for the more diverse non-rainforest flora were comparatively numerous and extensive (Supplementary Fig. 3c).
Despite the immediate potential impacts on south-eastern Australian vegetation revealed in this study, the ability of many plant communities and species to recover and regenerate after megafires of this scale remain poorly understood30,31,32. As we have shown, the size of species ranges (Fig. 3a, b) and the geographic position of the fires (Figs. 2a and 4a–d) both played an important role in determining the diversity and composition of the fire-affected flora. The demographic impact of the fires on specific taxa will also depend on their ability to survive and recover from fire (i.e., fire persisters vs. non-persisters sensu Pausas et al.33). Figure 3d contains a simple spatio-temporal framework that integrates these concepts, in which range-restricted and widespread fire persister and non-persister species occur in habitats with different fire histories. Here, we use this framework to investigate the implications of the fires for five different types of taxa.
Our data show that the majority of species affected by the fires are primarily found in sclerophyll forests and woodlands or shrublands and heathlands (Supplementary Data 2 and Supplementary Fig. 3d). Fire is a natural part of these ecosystems and many species are highly fire-adapted with traits such as a soil-stored seed bank34, serotinous cones or fruits35, smoke- and/or heat-induced seed germination36,37, fire-cued flowering38, thick protective basal bark39, epicormic buds or underground lignotubers that either provide protection from fire and/or ensure subsequent recovery40. Evidence from 270 species in our study confirms this pattern: 251 (93%) across 93 genera are reportedly fire persisters that can resprout or regenerate via propagules after fire, or both (Fig. 4e and Supplementary Data 3). Among these are many rare, endemic taxa such as some mallee eucalypts (Fig. 2h), shrubby Acacia, Callistemon, Grevillea and Zieria, and the tuber-forming orchids Corunastylis and Paraprasophyllum. Despite having small, fire-prone ranges, such fire-persister taxa (Type A in Fig. 3d) appear to have generally recovered well from other recent bushfires in south-eastern Australia41, and for these the Black Summer fires are unlikely to represent an unprecedented event, unless they have undergone recent range contraction. Many also occur in rocky habitats (cliffs, granite tors etc., Supplementary Fig. 3e) or in gullies or gorges (Supplementary Data 2) that afford some protection from fire.
In contrast, for widespread endemic species with ranges of 500 km or more (n = 122; Fig. 3a) the demographic consequences of the 2019-2020 fires are likely unprecedented over at least the past two centuries. While the majority are also likely to be fire-persisters (Type D in Fig. 3d and Supplementary Data 3), they are now at risk of novel range-wide threats during the recovery phase such as dieback and inhibited post-fire recovery caused by myrtle rust (Austropuccinia psidii)42, herbivory of regrowth by invasive animals, and drought. Rainforest taxa capable of surviving fire but unable to compete with subsequent incursion of weeds or sclerophyllous species (Type B in Fig. 3d) may be under similar pressure43,44. Obligate seeding woody species such as the ash eucalypts (e.g., Eucalyptus fraxinoides) are likely to be under threat if fires return prior to completion of their typically long sexual maturation periods45,46.
Finally, plants with narrow or wide ranges that rely on recolonisation via dispersal of propagules from unburnt areas (fire non-persisters; Types C and E; Fig. 3d) are clearly at risk of demographic decline and range contraction47,48. Among those identified (Supplementary Data 3) most were geophytic orchids with specialised structures that are damaged by fire (e.g., shallow tubers in Caladenia49 and Chiloglottis), wind-dispersed shrubs, or obligate epiphytes that lack a seedbank (e.g., the orchids Dockrillia and Plectorrhiza). Notable impact richness hotspots for these taxa occurred in north-eastern rainforests, the southern ranges, and the far south-east corner of NSW (Fig. 4f), and while no species endemic to the study area had very small ranges (RET < 25 km), populations of some epiphytes now apparently occur in highly disjunct rainforest patches (Supplementary Fig. 3f). A small but evolutionarily significant number of fire sensitive Gondwanan rainforest relics50,51 and other rainforest species may also face decline, particularly in habitats, which rarely, if ever, burn. Some of these taxa are known to resprout52 or regenerate from seed53 but for most further investigation of these traits is urgently required.
Collectively, there are grounds for cautious optimism that most plant species identified here will recover from all but the most intense fire54,55,56,57,58. Despite this resilience, however, recent evidence from forested ecosystems globally suggest that catastrophic fire events are increasingly catalysing dramatic changes in species composition across large areas59,60. In the most extreme cases tipping points are being reached, resulting in transitions from forest to non-forested vegetation61. Impairment of post-fire regeneration has been specifically linked to thresholds in vapour pressure deficit, soil moisture and maximum surface temperature1,31, as well as fire intensity and seed availability1,62. This is particularly concerning because much of the vegetation affected by the Black Summer fires was already suffering from extreme drought, record high temperatures (Supplementary Figure 1) and patchy canopy dieback prior to the onset of the 2019-2020 fire season. Even in the absence of fire these factors can drive rapid shifts in the dynamics and distribution of forest ecosystems2,63,64. In regions where the Black Summer fires burnt areas that had only recently recovered from previous fires, increasing fire frequency will be an additional stressor58. Australia’s Gondwanan rainforest communities (Fig. 2c), which were severely burnt in several bioregions (Fig. 1 and Table 1), are probably most susceptible. Furthermore, our data indicates that the vast scale of the 2019-2020 bushfires caused a taxonomically diverse array of species with subcontinental-scale ranges to suffer extensive losses of mature individuals, rendering them potentially susceptible to other factors such as disease65, herbivory, and disturbance. Collectively, these factors are all likely to have depleted the resilience of some forested ecosystems to fires of the severity and magnitude as those experienced during the ‘Black Summer’. Further work is now required to determine whether they may now be undergoing regenerative failure and permanent biogeographic change.
Generation of fire maps from hotspot data
Fire maps were derived from hotspot data obtained from the Geoscience Australia - Digital Earth Australia website (https://hotspots.dea.ga.gov.au/) for the period 1 July 2019 to 11 February 2020. We used data from four satellites: Himawari 8 [sensor = AHI, process algorithm = WFABBA version 6_5_010g66, hotspot temperature (T; Kelvin)], Suomi NPP [(sensor = VIIRS, process algorithm = VCM 1.O.000.002, hotspot confidence (%)], Aqua [sensor = MODIS, process algorithm = MOD14 version 6.2.167, hotspot temperature (TM; K) and confidence (%)], and Terra [sensor = MODIS, process algorithm = MOD14 version 6.2.1, hotspot temperature (K) and confidence (%)]. This dataset contained >3 million geocoded hotspot entries. The data were first cleaned to include only values of T > 0 K (Aqua, Terra, Himawari 8). We then removed spurious hotpots that did not occur within known fires by selecting only hotspots with T > 500 K (Himawari 8; 2,627,414 records) or hotspot confidence >50% (Aqua and Terra (209,224 records) and Suomi NPP (151,801).
The data were then gridded using a 2.5 × 2.5 km grid and the maximum T (TM) and/or confidence value determined for data from each satellite for each grid cell. A single raster containing all cells with identified hotspots was then generated. Contiguous cells containing at least one hotspot were then polygonised using the r Raster package, and polygons ≤25 km2 and lacking any cells with T > 1000 K (Himawari 8) were removed from the dataset. The retained dataset, therefore, contained only large fires with at least one hotspot indicating a moderate (1000–1500 K) emission temperature or higher. Finally, to gain insight into the temperature of fires within each grid cell we re-scaled all observed hotspot temperatures from the Himawari 8 satellite, or if absent, from Aqua and Terra satellites, to a relative scale of between 0 and 1, which represented maximum and minimum values of T [302.1 K to 506 K (29–233 °C) for Aqua and Terra and 400 to 1999.9 K (127–2273 °C) for Himawari 8 data] across the entire dataset (termed the relative fire temperature, TR). We then classified TR into four relative fire temperature classes: Low = 0–0.25, Medium =>0.25–0.50, High = >0.50–0.75, Very High = >0.75–1.0, with an additional class (no data) for cells containing >50% fire confidence, but no fire temperature data. The final fire maps included all internal unburnt polygons (minimum one grid cell). Data manipulation was performed using the R programming environment Version 4.0.1 [R Core Team (2013). R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria]. Software packages used here and below are documented in the Supplementary Notes.
The data filtering decisions removed spurious cells containing hotspots that lay outside of known fires and had little or no impact on the spatial arrangement of any of the major fires that were the focus of the study. The modelled fire extent was consistent with maps provided by the Emergency Management of Spatial Information Network Australia (www.emsina.org). However, it is important to point out that due to the resolution of the gridded dataset (2.5 × 2.5 km) the estimated fire area may exceed the extent of the actual burnt area, particularly around the fire margins, and that the relative fire temperature is the maximum observed for any hotspot data point within a given grid cell based on one of two process algorithms. Further refinement of these data may alter associated fire maps. Hotspot data may also underestimate fire occurrence during cloudy weather or other adverse conditions.
Quantification of fire impacts on vascular plant species
The objective of our study was to quantify the impact of the 2019–2020 fires on plant species and communities occurring in the south-east Australian mainland. The core metric used to compare species-and community-level impacts is the proportion of total species records or estimated area that fell within the modelled 2019–2020 fires, here defined as PF = FGI/(FGI + FGO) where FGI and FGO are total number or records or area inside and outside of the burnt areas, respectively. For all plant community data (major vegetation groups or MVGs; see below) PF was simply estimated as the proportion or percentage of each MVG (or combination of MVGs) or bioregion(s) that occurred within the fires (PFT). We used three different approaches, including species distribution modelling, to estimate PF for individual plant species based on specimen collections held at herbaria across Australia, because location data and ranges constructed from herbarium specimen data suffer from known spatial biases68. The underlying datasets and quantitative approaches used to estimate PF are described below.
Bioregion and vegetation mapping
We determined the areal proportion of each of eleven major bioregions in the south-eastern study area that were inside the 2019–2020 fires (PFT) based on bioregions defined by the Interim Biogeographic Regionalisation for Australia (IBRA)8 available at https://www.environment.gov.au/land/nrs/science/ibra and downloaded from https://www.environment.gov.au/fed/catalog/search/resource/details.page?uuid=%7B4A2321F0-DD57-454E-BE34-6FD4BDE64703%7D. Within each bioregion we also determined the area of each Native Vegetation Information System (NVIS) Major Vegetation Group (MVG)7 based on data managed by the Australian Government Department of Agriculture, Water and the Environment available at http://www.environment.gov.au/land/native-vegetation/national-vegetation-information-system/data-products and downloaded from http://environment.gov.au/fed/catalog/search/resource/details.page?uuid=%7B991C36C0-3FEA-4469-8C30-BB56CC2C7772%7D. To allow for comparisons to be made across general vegetation types that vary in species composition but retain a similar physiognomic structure, we also grouped 22 MVGs into four broader vegetation classes. These were: (1) rainforests and vine thickets (MVG 1), (2) eucalypt forests and woodlands (MVG 2-5, 11), (3) other forests and woodlands not typically dominated by eucalypts (MVG 6–10, 13, 15, 31), (4) shrublands and heathlands, including some open mallee woodlands (MVG 14, 16–18), and (5) grasslands, herblands, sedgelands and rushlands (19, 20, 21, 22; Supplementary Table 1). We then determined PFT for each MVG and broad vegetation class that occurred within the 2019–2020 fires, across (1) all bioregions, (2) across four coastal and near-coastal bioregions that were most affected by the fires (New England Tablelands, NSW North Coast, South East Corner, and Sydney Basin), and (3) within each bioregion. For each MVG with PFT > 50%, we also determined, at the bioregional level, an impact metric, IH, the estimated percentage of area in very high and high relative fire temperature classes relative to the total fires area, such that IH = [(AVH + AH)/(ATOT)] × 100 where AVH = total area burned at very high relative hotspot temperature (TR > 0.75–1.0), AH = total area burned at high relative hotspot temperature (TR > 0.50–0.75) and ATOT is the total area burned (excluding cells lacking temperature data).
Herbarium specimen dataset
Herbarium specimen records for south-eastern Australia [extent = bottom left (143.7012, −43.94065) to top right (156.58, −23.1593)] were downloaded from the Australasian Virtual Herbarium on January 24, 2020 (https://doi.org/10.26197/5e2bcb71d290c). We restricted the dataset to vascular plant species (Phylum Tracheophyta, included under Phylum Charophyta in the AVH), a total of more than 1.4 million records. We then screened all records for the presence of cultivated plants, introduced species, collections made prior to 1950 and specimens with questionable taxonomic attribution (including hybrids) or incorrect or poor quality (spatial resolution >25,000 m) location data and these were removed to improve data quality. We checked taxa for the presence of synonyms and outdated species names, taxonomic errors and recent taxonomic revisions and corrected the database. For all species with incomplete taxonomic information we determined, and added, plant family. Taxonomy and nomenclature followed the Australian Plant Census (APC; https://www.anbg.gov.au/chah/apc/) and for species not listed in the APC the Australian Plant Name Index (https://www.anbg.gov.au/apni/).
We also removed all species-level spatial duplicates to reduce bias associated with the oversampling of plants at a small number of sites within larger species ranges. The data were then cropped to the final southeast mainland study area of 144.01, −39.17 (bottom left) to 154.0, −25.34077 (top right), leaving a total of ~700,000 specimen records for use in estimating fire impacts. This region was selected because it encompassed all megafires that occurred in southeast Australia during the 2019–2020 bushfire season. Our data therefore explicitly include only specimen records from inside of the south-east Australian study area and so estimates of species-wide fire impacts pertain only to the parts of species ranges that occur within this area. Our data indicate that 86% of taxa with PFM > 0.50 were endemic to the study area and another 4% nearly so (see below and Supplementary Data 2).
Screening and manipulation of the database was performed using R version 4.0.1 and OpenRefine version 3.3 (Copyright 2010–2012, Google Inc. and contributors; https://openrefine.org/).
Estimation of fire impacts and species ranges based on herbarium specimen data and species distribution models
We estimated PF for all species in the cleaned herbarium specimen record database using two direct methods. First, we estimated the fraction of each spatially unique specimen location records that fell within the modelled fires (PFSR) by overlying species-level data with the gridded fire layer. The metric PFSR assumes that the spatial distribution of records is an unbiased sample of the underlying species distribution, which may underestimate the realised niche of plant species. However, it may be more accurate than predictive models for rare species that have been targeted for intensive collection and for which ranges have been well established. Second, to reduce the impact of spatial oversampling bias along roadsides and other heavily travelled areas68 we binned the same specimen location records into a 2.5 × 2.5 km spatial grid and determined, for each species, the fraction of cells that fell within the fires (PFBR). Since PFSR and PFBR are based on known location data, neither account for the possible presence of populations in unsampled areas. We also determined the maximum verified geographic range extent (RET; km) of each species as the difference between the two most physically distant location records within the study region69. We then classified RET into six size classes: (1) extremely range restricted (<10 km), very range-restricted (10–25 km), range-restricted (25–100 km), moderately widespread (100–500 km), very widespread (500–1000 km) and extremely widespread (>1000 km).
We constructed potential species distributions using the predictive maximum-entropy (MaxEnt) method based on the environmental conditions of known (positive) specimen locations extracted from the herbarium specimen record database. Models were considered only for species containing 10 or more unique geographic locations, which is towards the extreme lower sample size at which MaxEnt models are likely to produce reliable results70,71,72. MaxEnt species distribution models were constructed using MaxEnt version 3.4.1 (available at https://biodiversityinformatics.amnh.org/open_source/maxent/) and the R package dismo version 1.3–3 using all specimen records as training data, 21 environmental variables as predictor layers at 1 km2 resolution, and 10,000 background points.
Environmental predictors for the MaxEnt models included 15 bioclimatic variables and six soil and landform variables. Bioclimatic variables were temperature seasonality (CV; Bio04), maximum temperature of warmest month (°C; Bio05), minimum temperature of coldest month (°C; Bio06), mean temperature of warmest quarter (°C; Bio10), mean temperature of coldest quarter (°C; Bio11), annual precipitation (mm; Bio12), precipitation seasonality (CV; Bio15), precipitation of driest quarter (mm; Bio17), annual mean moisture index (Bio28), moisture index seasonality (CV; Bio31), mean moisture index of wettest quarter (Bio32), annual total actual evapotranspiration (mm; EAA), minimum monthly potential evaporation (mm; EPI), minimum monthly atmospheric water deficit (mm; WDI) and maximum monthly atmospheric water deficit (mm; WDX). The six soil and landform variables included were soil clay content 0–30 cm (%; CLY), sand content 0–30 cm (%; SND), total soil nitrogen 0–30 cm (%; NTO), total soil phosphorus 0–30 cm (%; PTO), soil bulk density 0–30 cm (g/cm3; BDW) and topographic wetness index (TWI3S). Data (9 s resolution) are available from the CSIRO Data Access Portal at https://doi.org/10.25919/5dce30cad79a8 (Bio4-Bio32)73, https://doi.org/10.4225/08/5afa9f7d1a552 (EAA, EPI, WDI and WDX)74 and https://doi.org/10.4225/08/5b285fd14991f (CLY, SND, NTO, PTO, BDW and TWI3S)75.
For each species model the predicted probability of occurrence was determined using the complementary log–log (cloglog) link function76. We used two different thresholds to generate final binary predictive distribution maps: (1) the maximum of Cohen’s Kappa (K)77,78,79, which determines the optimal threshold for statistical discrimination of presence-absence, and (2) the maximum training sensitivity plus specificity (MTSS), which is equivalent to the finding the point in the receiver operator characteristic (ROC) curve with a tangent slope of 180. We also determined the tenth percentile training presence (P10) threshold, which allows a fixed presence omission rate of 10%, for use in validation of MTSS models. All models were then overlayed with the fire layer, producing estimates of the fraction of the estimated range that fell into the fires based on K, MTSS and P10 thresholds (PFK, PFMTSS and PF10). While K-based models tended to accurately reproduce the small distributions of severely range-restricted species, they frequently underestimated the ranges of species with large but very disjunct or clumpy distributions and hence had excessively high positive training omission rates. We therefore excluded all K-based models with a true-positive rate (TPR, the proportion of known positive records correctly classified) below 0.80. We also found that a small number of MTSS-based models overestimated the distributions of very rare species with small and generally well-defined ranges, or restricted species with close relatives that grow in similar but disjunct areas of habitat. In cases where estimates of PFMTSS exceeded estimates of PFK and PF10 by 0.2 or more we visually inspected each model and selected either PK, PFMTSS or neither as the final estimate of proportional fire area (hereafter PFSDM).
Given that we were primarily concerned with identifying species that have likely been adversely affected by the 2019-2020 fires, and that knowledge of the distributions of most species within the study area is incomplete, we adopted a conservative approach by selecting the highest value among PFSR, PFBR and PFSDM as our species-wide estimate of proportion burnt (hereafter PFM). All species with PFM > 0.50 were then included in the final species list, a total of 816 species. Of these, MaxEnt models were generated for 644 species, which had ≥10 unique specimen locations. To determine the strength of support for inclusion, each species was then classified according to the type and number of specimen or model-based estimates of PF > 0.50, such that (1) = PFSR only, (2) = PFBR only, (3) = PFSDM only, (4) PFSR + PFBR, (5) PFSR + PFSDM, (6) PFBR + PFSDM or (7) PFSR + PFBR + PFSDM. The data show that of the 816 species with PFM > 0.50, 649 (80%) were supported by at least two PF estimates, 58 were supported by PFSR alone, 24 by PFBR alone, and 85 by PFSDM alone. For most taxa in the latter three categories, however, alternative PF estimates were usually just below the 0.5 criterion (Supplementary Data 2).
Identification and traits of fire-affected species
For all highly burnt species (i.e., PFM > 0.50; n = 816) we visually inspected all species distributions and classified each into (1) endemic to the south-eastern mainland study area, (2) near-endemic to study area, with a small proportion (ca. 10% or less) of records occurring elsewhere (usually in central-eastern Queensland or western Victoria), or (3) non-endemic to the study area. We also determined a selection of traits intended to reveal broader physiognomic and floristic impacts of the fires on south-east Australian vegetation and the potential ability of different taxa to recover. First, we assigned all species to one of 16 structural life and growth forms (hereafter life forms) based primarily on morphology: (1) annual or biennial or monocarpic forbs, (2) geophytic forbs (taxa with large underground storage bulbs or tubers but excluding taxa with swollen taproots, tuberoids or fleshy rhizomes), (3) non-geophytic perennial forbs, (4) annual graminoids, (5) perennial graminoids, (6) low subshrubs and shrubs <1 m, (7) medium shrubs 1–3 m, (8) tall shrubs and mallee eucalypts >3–7 m, (9) low trees >7–20 m, (10) medium trees >20–35 m, (11) tall trees >35 m, (12) climbers, (13) epiphytes, (14) low ferns or cycads, (15) tall ferns or cycads, and (16) aquatic species (Supplementary Data 2). Life or growth form analysis based on similar categories have been widely used to classify Australian plant species81,82,83,84,85 and allowed us to investigate fire impacts on different structural elements of the vegetation. Life form was determined using data provided in the Atlas of Living Australia (ALA; www.ala.org.au), NSW Flora Online (https://plantnet.rbgsyd.nsw.gov.au/), VICFLORA (https://vicflora.rbg.vic.gov.au/), recent taxonomic revisions and specimen sheets where required.
Since a major objective of the paper was to investigate the impact of the fires on relict rainforest species, we also used these data to classify each species according to prevalence in rainforest communities. We used a simple classification: (1) RF++ = primarily or solely occurring in rainforests, (2) RF+ = occurring in rainforests but not restricted to them; also frequently found in adjacent habitats, especially wet sclerophyll forests, 3) RF = sometimes found around the margins of rainforest but more prevalent in other habitats; not typically a rainforest species, and 5) RF− = not a rainforest species. We also noted species predominantly associated with sclerophyll forest or woodland, heathland or shrubland, rocky terrain (including granite tors, cliffs, rock fissures, exposed rocky peaks, outcrops, scree slopes) or steep gullies or gorges in rough terrain (Supplementary Data 2). We also noted a range of other habitat types and on overall habitat description of each species (Supplementary Data 2). Data were sourced primarily from the ALA, NSW Flora Online, VICFLORA and, for rainforest taxa, the Rainforest Plants of Australia Interactive Identification Key and Information System (http://rainforestplantsofaustralia.com/), taxa listed in Department of the Arts, Sport and the Environment and Territories 199229 and expert opinion. Descriptions provided on specimen records were also used to determine primary habitat. Data were limited for some species and some taxa may occur in habitats not noted in these sources.
Finally, we used the fire response classification system of Pausas et al.33 to determine two key fire-related traits for 270 species with PFM > 0.5: (1) resprouting ability, either resprouters (R + ) or non-resprouters (R-), and (2) propagule persistence, either propagule persisters (P + ) or non-persisters (P-). In this system R + species are capable of resprouting from vegetative structures such as rhizomes, epicormic buds or lignotubers following 100% canopy scorch, while populations of P + species persist via a persistent seed bank, serotiny, or pyrogenic flowering. These two traits were then used to classify each plant species into one of four fire response types: (1) R + P + = facultative species that can survive fire by either resprouting or recruiting from a persistent seedbank, (2) R + P− = obligate resprouters that depend on post-fire vegetative regrowth and recruit only after production of new propagules in the inter-fire period, (3) R − P + = obligate seeders, which are post-fire recruitment specialists, and (4) R − P − = non-persisters, or species that do not survive fire and recover only following dispersal of propagules from unburnt sites. For simplicity, R + P + , R + P − and R − P + species, and where data were partial, R + and P + species, were collectively referred to as fire persisters. Fire response data were sourced primarily from the New South Wales Flora Fire Response Database (supplied by Fire Ecology Unit, NSW Office of Environment and Heritage, Hurstville, NSW 1481) supplemented by additional references and expert opinion (Supplementary Data 3).
Statistical analyses were used to investigate relationships among range extent, life form, habitat type and fire impacts across taxa. First, we quantified the skewness of the distribution of maximum range extent (RET) across taxa endemic to the study area and tested deviation from normality using the Shapiro-Wilk statistic W. We then compared RET across rainforest habitat categories (RF + +, RF+, RF and RF−) using simple one-way analysis of variance with data transformed [y = log10(x + 1)] prior to analysis to meet model assumptions of normality and homoscedasticity; post hoc means comparisons were made using Tukey’s Honest Significant Difference method. Additional statistical information, including support provided by alternative statistical models is provided in the Supplementary Notes.
We quantified range size (RET) across different life form categories and tested for group differences using the nonparametric Kruskal–Wallis rank-sum test and post-hoc pairwise Wilcox rank-sum tests with Benjamini and Hochberg’s86 BH adjustment for multiple comparisons. We also aggregated range size data into six broader life form groupings (low shrubs, medium shrubs, tall shrubs, trees, perennial forbs and other, including epiphytes and climbers) and four range classes (extremely and very range restricted with ranges <25 km, range restricted with ranges 25–100 km, moderately widespread with ranges 100–500 km, and very or extremely widespread with ranges >500 km). Row-column contingency was tested using the standard Pearson χ2 statistic (Supplementary Notes).
The relationship between RET and proportion burnt (PFM) across taxa was triangular and hence violated distributional assumptions of linear regression (Supplementary Notes). To quantify this relationship we first tested for an overall difference in PFM across eight RET size classes (<10 km, 10 to <25 km, 25 to <100 km, 100 to <250 km, 250 to <500 km, 500 to <750 km, 750 to <1000 km and 1000 to 1500 km) using the Kruskal–Wallis rank-sum test. We then used quantile regression to characterise the relationship between RET and PFM at 0.10, 0.20….0.90 quantiles (τ) using linear quantile regression models with coefficient confidence intervals estimated using the Koenker rank method. Finally, we compared PFM across rainforest categories (RF++, RF+, RF and RF−) using the Kruskal–Wallis rank-sum test with post-hoc pairwise group comparisons based on pairwise Wilcox rank-sum tests with the BH adjustment for multiple comparisons. Statistics were performed using the R stats base package version 4.0.1, moments package version 0.14 and the quantreg package version 5.75.
Further information on research design is available in the Nature Research Reporting Summary linked to this article.
Source data and output data that support the results reported in this study are publicly available on the CSIRO Data Access Portal (https://data.csiro.au) at https://doi.org/10.25919/sd7h-ff33. This includes fire hotspot, NVIS and IBRA source datasets downloaded under Creative Commons Attribution 4.0 International Licence and generated fire layers. Data used to generate statistics reported in the paper are available in Supplementary Data 2. Source data are provided with this paper.
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The authors thank Liz Tasker, Rod Fensham, Neville Walsh, Phil Gilmour and Pete Richards for assistance with fire response traits. We thank Murray Fagg and curators of the Australian Plant Image Index for providing images.
The authors declare no competing interests.
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Godfree, R.C., Knerr, N., Encinas-Viso, F. et al. Implications of the 2019–2020 megafires for the biogeography and conservation of Australian vegetation. Nat Commun 12, 1023 (2021). https://doi.org/10.1038/s41467-021-21266-5
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