Abstract
gem-Difluoroalkene is a bioisostere of carbonyl group for improving bioavailability of drug candidates. Herein we develop structurally diverse 2,2-difluorovinyl benzoates (BzO-DFs) as versatile building blocks for modular synthesis of gem-difluoroenol ethers (44 examples) and gem-difluoroalkenes (2 examples) by Ni-catalyzed cross coupling reactions. Diverse BzO-DFs derivatives bearing sensitive functional groups (e.g., C = C, TMS, strained carbocycles) are readily prepared from their bromodifluoroacetates and bromodifluoroketones precursors using metallic zinc as reductant. With Ni(COD)2 and dppf [1,1’-bis(diphenylphosphino)ferrocene] as catalyst, reactions of BzO-DFs with arylboronic acids and arylmagnesium/alkylzinc reagents afforded the desired gem-difluoroenol ethers and gem-difluoroalkenes in good yields. The Ni-catalyzed coupling reactions features highly regioselective C(vinyl)–O(benzoate) bond activation of the BzO-DFs. Results from control experiments and DFT calculations are consistent with a mechanism involving initial oxidative addition of the BzO-DFs by the Ni(0) complex. By virtue of diversity of the BzO-DFs and excellent functional group tolerance, this method is amenable to late-stage functionalization of multifunctionalized bioactive molecules.
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Introduction
gem-Difluoroalkene functionality is considered as the bioisostere of a carbonyl group in drug design (Fig. 1a)1,2. Drug molecules containing carbonyl groups are prone to reduction by NAD(P)H-dependent reductases, causing poor bioavailability owing to drug-inactivation and excretion3,4. Bonnet–Delpon and co-workers already demonstrated that gem-difluoroalkene-derivatized artemisinins exhibit prolonged in vivo antimalarial activity through replacement of the carbonyl group5. Moreover, gem-difluoroalkenes can be transformed to various organofluorine motifs6,7 such as trifluoromethyl8,9,10, difluoromethyl11,12,13,14, monofluoroalkenyl15,16,17,18, and difluoromethylenyl19,20 groups for late-stage functionalization. Conventionally, Wittig- or Horner-Wadsworth-Emmons-type olefination and SN2’ reactions of vinyl trifluoromethyl compounds are widely employed to construct the gem-difluoroalkene moiety7,21,22. However, development of new strategies for structurally diverse synthesis of the gem-difluoroenol ethers and gem-difluoroalkenes under mild conditions is highly desirable.
Transition metal-catalyzed defluorinative cross-coupling reactions are attracting considerable attention for the synthesis of structurally diverse gem-difluoroalkenes (Fig. 1b)23,24,25,26. For instance, Hu27 pioneered the Cu-catalyzed defluorinative coupling of trifluoromethylsilane and diazoalkanes. Alternatively, transition metal-mediated aryl/alkylative allylic β-fluoride elimination of trifluoromethyl alkenes also demonstrates enormous promises in this pursuit. In 2008, Murakami and co-workers reported the first example of gem-difluoroalkenes synthesis by the Rh-catalyzed addition of arylboronic acids to α-(trifluoromethyl)styrene, followed by β-fluoride elimination28. Later, the groups of Hayashi29 and Lautens30 independently developed the analogous Rh-catalyzed asymmetric arylative β-fluoride elimination reactions. Recently, Ni-catalyzed defluorinative reductive cross-coupling of trifluoromethyl alkenes with N-hydroxyphthalimide esters31, acetals32, cyclobutanone oxime esters33, and alkenes34 have been reported. Norton and co-workers demonstrated the hydrodefluorination reactions of CF3-substitited alkenes catalyzed by Ni(II)-hydride complexes. The reaction was mediated by H-atom transfer from Ni(II)-hydride, followed by defluorination35.
While the current cross-coupling protocols are effective for the synthesis of gem-difluoroalkenes, other moieties such as gem-difluoroenol ethers which are also found in some pharmaceutical compounds remains less accessible36,37,38,39,40. In this regard, Katz and co-workers reported the preparation of stable potassium trifluoroborate gem-difluoroenol ethers, which would deliver the gem-difluoroenol ethers by cross-coupling with aryl halides under palladium catalysis41. To our knowledge, methods producing gem-difluorovinyl building blocks with immense structural diversity for the gem-difluoroenol ethers and gem-difluoroalkenes synthesis are rare. Herein we report a convenient synthesis of structurally diverse 2,2-difluorovinyl benzoates (BzO-DFs) by zinc treatment of the abundant bromodifluoroacetates and bromodifluoroketones as starting materials. The BzO-DFs serve as versatile building blocks for synthesis of diverse gem-difluoroenol ethers and gem-difluoroalkenes by Ni-catalyzed arylation and alkylation using nucleophiles such as arylboronic acids, arylmagnesium bromides, alkylzinc bromides, potassium alkyltrifluoroborates. Encouragingly, cross electrophile coupling reactions involving alkyl chlorides were also feasible under Ni catalysis (Fig. 1c).
Results
Synthesis and scope of BzO-DFs
To begin, 2-bromo-2,2-difluoroacetate (1.0 mmol) was treated with benzoyl chloride (0.5 mmol) and zinc powder (2.0 equiv) in a dioxane/MeCN (4:1 v/v) mixture under a N2 atmosphere, and 3a was obtained in 77% yield (see Supplementary Information for optimization study). For structure characterization, the 19F NMR spectrum of 3a featured two characteristic doublet signals at −116 and −117 ppm, which is consistent with the gem-difluoroenol ether structure. The molecular structures of the BzO-DF derivatives 4s and 5c have been unambiguously established by X-ray crystallography.
Employing the Zn-mediated protocol, we accomplished the synthesis of the BzO-DFs involving diverse 2-bromo-2,2-difluoroacetates and carboxylic acid chlorides (Fig. 2). Reacting 2-bromo-2,2-difluoroacetate with various substituted aroyl chlorides (4-Me, 4-OMe, 4-Cl, 4-Br, and 4-F) afforded the corresponding benzoates (3a–3f) in 45–82% yields. Coupling of the 1-adamantanecarbonyl chloride with 2-bromo-2,2-difluoroacetate gave 3g in 78% yield. The 2-bromo-2,2-difluoroacetates derived from simple primary alcohols such as n-dodecyl alcohol, benzyl alcohol, and cyclopropyl methanol were transformed to their difluorovinyl benzoates in 84% (4a), 71% (4b), and 52% (4c) yields, respectively.
Those 2-bromo-2,2-difluoroacetates derived from secondary and tertiary alcohols including isopropanol (4d: 72%), cyclobutanol (4e: 62%), cyclohexanol (4f: 83%), cyclododecanol (4g: 78%), 2-exo-norbornanol (4h: 70%), 3-pinanol (4i: 74%), and 1-adamantanol (4j: 62%) were also effectively converted to their corresponding BzO-DFs.
BzO-DFs containing a silyl (4k: 72%), ether (4l: 81%), phthalimide (4m: 36%), and trimethylene glycol group (4n: 54%) were also prepared, albeit in moderate yields. Similarly, those BzO-DFs analogs containing C = C bonds (4o: 68%; 4p: 75%) were also obtained. Interestingly, BzO-DFs derived from some bioactive natural products such as β-citronellol (4q: 71%), androsterone (4s: 55%), l-(-)-menthol (4r: 57%) and lithocholic acid (4t: 73%) were also prepared successfully.
For the synthesis of the aryl-substituted BzO-DFs derivatives, we found that the best results were obtained by pairing electron-poor 4-(trifluoromethyl)benzoyl chloride with the bromodifluoroketones bearing electron-rich aryl substituents; the corresponding 5a (4-tert-butylaryl) and 5b (2-methylaryl) can be obtained in moderate to excellent yields (64%, 92%). On a contrary, the analogous reaction of benzoyl chloride and the 4-methoxyarylketone derivative afforded 5c in only 18% yield.
Reaction design and optimization
While the Ni-catalyzed C–O bond activations42,43 of aryl carbonates44,45, aryl esters46,47, and aryl carbamates48,49 are well precedented, the analogous C–O bond activation of vinyl benzoates is less established50. Our next goal is to examine the Ni-catalyzed coupling reaction of BzO-DFs with arylboronic acids as nucleophiles through regioselective C(vinyl)–O(benzoate) bond activation. Pleasingly, when 3a was treated with 4-methoxyphenylboronic acid 6c in the presence of Ni(COD)2 (COD = cyclooctadiene; 10 mol%), dppf (1,1’-bis(diphenylphosphino)ferrocene; 12 mol%), K2CO3 (3.0 equiv), and water (4.0 equiv) in dioxane (0.01 M) under an N2 atmosphere, the desired gem-difluoroenol ether 7c was obtained in 87% yield (Table 1, entry 1).
As shown in Table 1, the result with dppf as ligand is outstanding when compared to other common auxiliary ligands (Table 1, entry 2). Notably, the use of dcpb [1,4-bis(dicyclohexylphosphino)butane] furnished 7c in 71% yield (Table 1, entry 3); yet bpy (2,2′-bipyridyl) and IPr·HCl (1,3-dimesityl-1H-imidazol-3-ium chloride) known to be utilized for some Ni-catalyzed cross couplings are completely ineffective (Table 1, entry 4).
The choice of bases was also critical; the use of strong bases such as KOH or KOtBu led to decomposition of 3a without 7c being detected (Table 1, entry 5). Employing K3PO4 and Na2CO3 as bases gave 7c in 53% and 62%, respectively (Table 1, entries 6–7). Apparently, 4.0 equiv of water as additive produced the best result. Reaction run under anhydrous conditions afforded 7c in only 31% yield (Table 1, entry 8); see Supplementary Information for details. The coupling was also sensitive to the reaction medium. When THF was used in lieu of dioxane, the yield of 7c decreased significantly to 43% (Table 1, entry 10); the coupling reaction was largely suppressed when polar aprotic solvents such as MeCN, DMF and ethyl acetate were employed (Table 1, entries 11–13). Although Ni(PPh3)4 was catalytically active for this transformation with 7c being formed in 40% yield (Table 1, entry 14); Ni(II) salts such as NiCl2 and Ni(OAc)2 were completely inactive with complete recovery of the starting materials (Table 1, entry 15).
Substrate scope
With the optimized conditions, we performed the cross-coupling scope study with a series of arylboronic acids (Fig. 3). For para-substituted arylboronic acids except those containing SMe (7g, 30%), OH (7h, 34%), and Cl (7j, 42%), the Ni-catalyzed coupling products were furnished in synthetically meaningful yields (7a–7f, 7i). Arylboronic acids with coordinating nitrogen-, oxygen- and C=C moieties also reacted smoothly (7k: 52%; 7l: 50%, 7m: 40%). Similarly, successful couplings were also accomplished for the arylboronic acids with naphthalene motifs (7n: 76%; 7o: 82%), disubstituted aryl groups (7p: 78%), and polyheterocyclic functions (7q: 74%; 7r: 74%; 7s: 56%; 7t: 51%). Moreover, the coupling reactions have been applied for late-stage modification of some natural products compounds. For examples, the coupling reactions with the arylboronic acids derived from vitamin E, estrone and flavanone afforded the desired coupled products in moderate yields (7u: 26%; 7v: 60%; 7w: 39%).
Under the Ni-catalyzed conditions, BzO-DFs derived from simple primary alcohols (8a–8c: 66–89%) and several secondary and cycloalkanols (8d: 87%, 8e–8g: 71–83%) were readily transformed to the corresponding coupled products. Gratifyingly, the benzoates with 2-exo-norbornanyl (8h: 80%), pinanyl (8i: 70%), and adamantyl (8j: 76%) were effectively arylated. Successful coupling reactions were achieved with benzoates derived from difunctionalized alcohols such as alkene (8k: 70%, 8l: 84%), 1,3-propandiol (8m: 57%), trimethylsilyl ethanol (8n: 68%), ethereal (8o: 77%), and phthalimide moieties (8p: 43%) were well tolerated. The coupling reactions of 4-methoxyphenylboronic acid with the benzoates derived from androsterone (8q: 75%), β-citronellol (8r: 79%), and l-(-)-menthol (8s: 80%) were also successfully accomplished. In this work, two BzO-DFs derived from bromodifluoroketones (1v, 1x) were also transformed to corresponding gem-difluoroalkenes (9a: 65%, 9b: 67%). The molecular structure of 9a has been established by X-ray crystallography.
Synthetic applications
We are gratified that the difluorovinyl benzoates synthesis and the subsequent Ni-catalyzed cross-coupling reactions can be performed in a larger scale (2.0–6.0 mmol) without significant drop in yields (Fig. 4a). The practicability of BzO-DFs as the building blocks is also demonstrated by their favorable reactivity towards a wide range of coupling partners (Fig. 4b). Apart from arylboronic acids, aryl Grignard reagent was also found to be effective coupling partner. Employing Ni(COD)2 (10 mol%) as catalyst and PPh3 (20 mol%), 3a reacted (4-methoxyphenyl)magnesium bromide to furnish 7c in 45% yield (Fig. 4b, eq. 1). The current Ni-catalyzed reaction can be extended to C(sp2)–C(sp3) bond construction using some common alkyl-metal nucleophiles. For instance, the less-reactive n-hexylzinc bromide (Fig. 4b, eq. 2) and benzylzinc bromide (Fig. 4b, eq. 3) [dppf (24 mol%) as ligand)] with 4b/3a gave the corresponding difluoroalkenes 11 and 10 in 38% and 22% yields, respectively.
In this work, we also examined the possibility to engage 3a with some electrophiles for cross electrophile coupling reactions. We are pleased that benzyl chloride successfully coupled 3a to give 10 in 47% yield using some conventional Ni-catalyzed reductive coupling conditions: Ni(OAc)2 (10 mol%), bpy (12 mol%) and Mn (2.0 equiv) (Fig. 4b, eq. 4). Redox-active ester failed to alkylate with 3a under similar reductive coupling conditions (Fig. 4c, eq. 5). Apparently, our “Ni(COD)2 + dppf” protocol is not effective when potassium benzyltrifluoroborate was employed as the coupling partner. Yet, effective C(sp2)–C(sp3) coupling was achieved under photochemical conditions. When we employed Molander’s protocol [i.e., NiCl2(dtbpy) (10 mol%), Ir[dF(CF3)ppy]2(bpy)PF6 (3 mol%), blue light (26 W)], benzyltrifluoroborate reacted with 3a to forge 10 formation in 54% yield (Fig. 4b, eq.6).
Mechanistic studies
Underlying the favorable reactivity of the BzO-DFs for gem-difluoroenol ethers synthesis is the regioselective C(vinyl)–O(benzoate) bond activation. Compared to the C(acyl)/C(alkyl)–O bonds activation, the observed selectivity may be attributed to the better leaving group reactivity of the benzoates47. In this regard, we performed a correlation study using a series of BzO-DFs (3a/3b/3c/3d/3f/3h/3i), which bear a series of substituted benzoic acids as leaving groups. Four sets of competition reaction: [3a+3b], [3a+3c], [3a+3d], [3a+3f], [3a+3h], [3a+3i] were performed, and the yields of remaining substrates were determined by 19F NMR with PhCF3 as an internal standard. Plotting log(kFG/kH) with the Hammett σ(para) constants resulted a linear plot with a slope of +0.82 (R2 = 0.82) of log(kFG/kH) against the σ(para) constants. This finding indicated a faster reaction rate is promoted by electron-withdrawing substituents on the benzoates. This implies that partial negative charge build-up at the transition state of the oxidative addition.
In terms of product formation, it was found that the Ni-catalyzed arylation of 3a–3f exhibited rather optimal yields (>80%) when the pKa values are within the range of 4.14–4.57. Lower yields were observed for 3d (LG = 4-chlorobenzoic acid) and 3e (LG = 4-bromobenzoic acid) despite of the lower pKa values of 3.97. (Fig. 5b). As expected, for the BzO-DF with adamantanecarboxylic acid (pKa = 4.86) as the leaving group, no coupling product was obtained under the standard conditions (see Supplementary Information for details). The benzoates were indeed the leaving group for the C(vinyl)–O activation; this is verified by the isolation of the benzoic acids in 76% yield after treating the reaction crude with HCl (aq) (Fig. 5c, eq. 1).
Regarding to the mechanism, Ni(0) complexes are known to effect C(sp2)-halide bond activation initiated by single-electron transfer mechanism. It appeared plausible that the C(vinyl)–O(benzoate) activation may proceed via initial single-electron reduction of the BzO-DFs by the Ni(0) complex, leading to carboradicals formation via the C–O bond fragmentation. In this work, the radical mechanism was scrutinized by using TEMPO as radical trap. When the “3a+6c” reaction was performed in the presence of TEMPO (2.0 equiv), the 7c formation was completed suppressed with 61% recovery of the starting 3a (Fig. 5c, eq. 2). Apparently, no TEMPO-radical adducts were detected by GC-MS and LC-HRMS analysis of the reaction mixture. The lack of product formation could be attributed to the oxidation of the active Ni(0) complexes by the TEMPO, resulting in the loss of the catalytic activity. Consistent with this notion, when BHT (2.0 equiv) was used in place of TEMPO as radical trap, effective formation of 7c (85%) was detected by NMR analysis (Fig. 5b, eq. 3). Furthermore, when 3a and 6c were subjected to the Ni-catalyzed conditions in the presence of α-cyclopropylstyrene (2.0 equiv) as radical probe, 7c was formed in 75% yield and the radical probe was completely recovered unchanged (Fig. 5c, eq. 4). On the basis of these findings, pathways involving radical formation is untenable.
We performed density-functional theory (DFT) calculation to delineate the mechanistic details of the reaction. We chose the “3a+6c” reaction as a model for our DFT study. Based on our ligand screening study, we believed that the dppf-ligated Ni(0) species A is the active species to initiate the coupling reaction. Oxidative addition of 3a should pass through a barrier of ~27.2 kcal mol−1. This step is found to be the rate-determining step51,52. As shown in Fig. 6, oxidative addition of 3a to form complex B is nearly a thermal neutral process. Yet, the major driving force of the oxidative addition appears to be the ligand exchange reaction of the benzoate with K2CO3 to form complex C, which is highly exergonic with a drop of the relative Gibbs free energy from 2.0 kcal mol−1 to −12.4 kcal mol−1. Subsequent transmetalation with arylboronic acid 6c takes place via a six-membered ring transition state (TSC-D) to generate intermediate D53,54. The transmetalation is followed by spontaneous reductive elimination to give Ni(0) complex E involving a drop of ΔG of the system from −8.0 kcal mol−1 to −39.2 kcal mol−1. Finally, E reacts with 3a through ligand exchange to give product 7c with the regeneration of the active species A, which is very facile with low energy barriers.
In summary, we developed a modular synthesis of gem-difluoroenol ethers and gem-difluoroalkenes by the Ni-catalyzed coupling with structurally diverse BzO-DFs. The BzO-DFs can be easily prepared from abundant bromodifluoroketones and bromodifluoroacetates. Exhibiting remarkable functional groups tolerance, this Ni-catalyzed protocol permits easy installation of a gem-difuorovinyl group to bioactive molecules. This reaction should supplement the conventional strategies in exploiting difluorovinyl moieties in drug design and development. Control experiments and DFT calculations revealed that the reaction is initiated by regioselective oxidative addition of the BzO-DFs by the Ni(0) complex. The intermediate vinylnickel(II) benzoate complexes readily exchanged with organometallic nucleophiles enabling a versatile C(sp2)–C(sp2) and C(sp2)–C(sp3) coupling manifolds.
Methods
General procedure for preparation of BzO-DFs (3–5)
To a 25 mL round-bottom flask with a magnetic stir bar was added acyl chloride (1.0 equiv, 0.5 mmol), Zn powder (2.0 equiv, 1.0 mmol), MeCN (0.5 mL) and dioxane (1.5 mL) in a nitrogen-filled glovebox. The reaction mixture was then sealed with a rubber septum and removed from the glovebox. To the mixture, 1 (2.0 equiv, 1.0 mmol) was diluted with dioxane (0.5 mL) and added with a syringe pump over 20 min. After stirring the reaction mixture for further 12 h at 30 °C, the reaction mixture was filtered, and the filtrate was concentrated in vacuo. The residue was purified by flash column chromatography (n-hexane:ethyl acetate = 200:1–50:1) to give the desired 2,2-difluorovinyl benzoates.
General Procedure for Ni-catalyzed cross-coupling reaction between BzO-DFs (3–5) and arylboronic acids
To a 8 mL vial equipped with a magnetic stir bar was added 2,2-difluorovinyl benzoate 3–5 (1.0 equiv, 0.2 mmol), arylboronic acid 6 (2.0 equiv, 0.4 mmol), K2CO3 (3.0 equiv, 0.6 mmol) and deionized water (4.0 equiv, 0.8 mmol) in a nitrogen-filled glovebox. Then a premixed solution of Ni(COD)2 (10 mol%, 0.02 mmol), dppf (12 mol%, 0.024 mmol) and dioxane (0.01 M, 2.0 mL) was transferred to the reaction mixture. The 8 mL vial was then capped and removed from the glovebox. After stirring the reaction mixture for 15 h at 60 °C, the reaction mixture was cooled to room temperature and diluted with ethyl acetate. The solution was then filtered through a pad of Celite®. The filtrate was then dried over MgSO4 and concentrated in vacuo. The residue was purified by flash column chromatography (n-hexane:ethyl acetate = 200:1–50:1) to give the desired products.
Data availability
All data are available from the corresponding authors upon reasonable request. The X-ray crystallographic coordinates for structures reported in this study have been deposited at the Cambridge Crystallographic Data Centre (CCDC), under deposition numbers 2008864 (4s), 1921828 (5c), and 1921829 (9a). These data can be obtained free of charge from The Cambridge Crystallographic Data Cenrte via www.ccdc.cam.ac.uk/data_request/cif”.
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Acknowledgements
We acknowledge the financial support of The Hong Kong Research Grants Council (153037/14P, 153152/16P, 153023/17P, 153017/19P, and C5023-14G). Dr. Bingnan Du and Dr. Chun-Ming Chan thanks The State Key Laboratory for Chemical Biology and Drug Discovery for the generous support of the Postdoctoral Fellowship.
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B.D. performed the experiments. W.-Y.Y. conceived, directed the project, and wrote the paper. C.-M.C. engaged in revision of the manuscript, mechanistic studies, revamping the data, and graphical presentation of the manuscript and revised the Supplementary Information. P.-Y.L. and L.-H.C. prepared and organized physical characterization data, involved in discussion of mechanism, purification of substrates and preparation of the initial draft of the manuscript. X.X. and Z.L. conducted the density functional theory calculations.
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Du, B., Chan, CM., Lee, PY. et al. 2,2-difluorovinyl benzoates for diverse synthesis of gem-difluoroenol ethers by Ni-catalyzed cross-coupling reactions. Nat Commun 12, 412 (2021). https://doi.org/10.1038/s41467-020-20725-9
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DOI: https://doi.org/10.1038/s41467-020-20725-9
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