Fig. 2: Probing S-glycoprotein binding to the ACE2 host receptor on model surface. | Nature Communications

Fig. 2: Probing S-glycoprotein binding to the ACE2 host receptor on model surface.

From: Molecular interaction and inhibition of SARS-CoV-2 binding to the ACE2 receptor

Fig. 2

a Binding of S-glycoprotein subunit (S1 or RBD) is probed on an ACE2-coated surface. b Retraction part of four force–distance curves showing either nonadhesive or specific adhesive curves. c Box plot of specific binding probabilities (BP) measured by AFM between the functionalized tip (S1, RBD, or PEG) and the grafted surface (ACE2 or OH-/COOH-terminated alkanethiol (bare surface)). One data point belongs to the BP from one map acquired at 1 µm/s retraction speed. The square in the box indicates mean, the colored box indicates the 25th and 75th percentiles, and the whiskers indicate the highest and the lowest values of the results. The line in the box indicates median. N = 12 (S1, RBD), 18 (PEG), and 9 (S1, RBD vs. bare surface) maps examined over 4 (S1, RBD), 6 (PEG), and 3 (S1, RBD vs. bare surface) independent experiments. d Bell–Evans model describing a virus-receptor bond as a two-state model. The bound state is separated from the unbound state by a single energy barrier located at distance xu. koff and kon represent the dissociation and association rate, respectively. e, f Dynamic force spectroscopy (DFS) plot showing the distribution of the rupture forces as a function of their loading rate (LR) measured either between the S1 subunit and the ACE2 receptor (N = 1052 data points) (e) or between the RBD and the ACE2 receptor (N = 1490 data points) (f). The error bar indicates s.d. of the mean value for a single interaction (0–200 pN). The solid line represents the fit of the data with the Bell–Evans fit. Experiments were reproduced at least four times with independent tips and samples. g, h The BP is plotted as a function of the contact time for S1 subunit and RBD on ACE2 model surfaces, and data points were fitted using a least-squares fit of a monoexponential growth. One data point belongs to the BP from one map acquired at 1 µm/s retraction speed for the different contact times. Experiments were reproduced three times with independent tips and samples. P values were determined by two-sample t test in Origin. The error bar indicates s.d. of the mean value. Source data are provided as a Source Data file.

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