Fig. 5: Runtime comparisons in log-transformed seconds for benchmarked reference-based decomposition methods. | Nature Communications

Fig. 5: Runtime comparisons in log-transformed seconds for benchmarked reference-based decomposition methods.

From: Accurate estimation of cell composition in bulk expression through robust integration of single-cell information

Fig. 5

a Runtime for subcutaneous adipose dataset, which included 100 RNA-seq samples and 6 snRNA-seq samples with around 1800 nuclei per individual. b Runtime for dorsolateral prefrontal cortex dataset, which included 628 RNA-seq samples and 8 snRNA-seq samples. We benchmarked each method using around 2125 nuclei per snRNA-seq sample. Source data are provided as a Source Data file.

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