Table 1 Additional aligner benchmarks

From: Accurate high throughput alignment via line sweep-based seed processing

  MA Minimap2 NGMLR Blasr GraphMap BWA-MEM Bowtie 2
Startup time 2.8 s 7.1 s 4.6 s 143 s 46.0 s 2.6 s 1.9 s
Index size 5.7 Gb 7.1 Gb 5.3 Gb 13 Gb 41 Gb 5.7 Gb 4.4 Gb
Peak mem. 6.0 Gb 9.2 Gb 6.4 Gb 16.4 Gb 46.2 Gb 6.1 Gb 6.1 Gb
  1. The benchmarks reported in column 1 to 5 are measured using simulated PacBio reads, while column 6 and 7 comprise benchmarks received via Illumina reads generated by DWGSIM. Supplementary Note 8 describes the environment used for this analysis