Fig. 6 | Nature Communications

Fig. 6

From: Accurate high throughput alignment via line sweep-based seed processing

Fig. 6

Strip of consideration (SoC). Seeds are visualized as solid lines. The SoC is the shaded area that comprises the seeds s′, s′′ and s′′. The SoC width is equal to λ, where λ is computed on the foundation of the query size and a given scoring scheme. The orange seeds s and s′′′ are outside of the SoC. The dashed line to the bottom-left of each seed leads to the respective δ-value for this seed. The SoC score is the accumulated length of seeds within the SoC. In this example, the SoC score is seven

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