Fig. 2 | Nature Communications

Fig. 2

From: Tracking the origin of two genetic components associated with transposable element bursts in domesticated rice

Fig. 2

Copy numbers of mPing, Ping, and Pong elements in rice subgroups. a mPing copy numbers in 3000 genomes and the four accessions undergoing mPing bursts (HEG4, EG4, A119, and A123). Colors represent the five major rice subgroups: indica (IND), aus/boro (AUS), aromatic (ARO), temperate japonica (TEJ), tropical japonica (TRJ), and admixed (ADM). b Ping copy numbers in 3000 genomes and the four accessions undergoing mPing bursts. c Neighbor-joining tree of temperate japonica accessions using genome-wide SNPs. d mPing copy number of temperate japonica accessions. e Ping copy number of temperate japonica accessions. Accessions that have the Ping16A_Stow locus are noted with open circles. Source data for Fig. 2a, b, d, e are provided in Supplementary Data 1