Fig. 6 | Nature Communications

Fig. 6

From: De novo main-chain modeling for EM maps using MAINMAST

Fig. 6

Average accuracy of residue positions relative to the degree of consensus among top 100 models for the 30 real EM maps. Cα positions of top 1 scoring model of 28 experimental EM maps were compared from those from top 2 -99 models, which were ranked by the MDFF score. Two maps, EMD-3073 and EMD-8116 were excluded because the top 1 protein models generated for these two maps were exceptionally bad (RMSD: 40.42 Å and 49.78 Å, respectively). Consensus on the x-axis shows the fraction of the models that have a residue within 3.5 Å. Black circles, the average error of each Cα positions (the bar on the left) of top 1 scoring model relative to the consensus fraction. Triangles, the total number of residues in the 30 models (the bar on the right) that have a certain consensus value. It is evident that the quality of regions with a consensus of 0.5 or higher are modeled well, on average within less than 3.0 Å

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