Fig. 3 | Nature Communications

Fig. 3

From: Phylogenomics and antimicrobial resistance of the leprosy bacillus Mycobacterium leprae

Fig. 3

Phylogeny of M. leprae. a Maximum parsimony tree of 154 genomes of M. leprae. The tree is drawn to scale, with branch lengths representing number of substitutions. M. lepromatosis was used as outgroup. Bootstrap values (500 replicates) are shown next to the branches. Dots indicate protein-changing mutations in the corresponding gene as given in Table 1. b Bayesian phylogenetic tree of 146 genomes of M. leprae calculated with BEAST 2.4.4. Hypermutated samples with mutations in the nth gene were excluded from the analysis. The tree is drawn to scale, with branch lengths representing years of age. Samples were binned according to geographic origin as given in the legend. Posterior probabilities for each node are shown in gray. Location probabilities of nodes were inferred by the Discrete Phylogeny model

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