This is a preview of subscription content, access via your institution
Access options
Subscribe to this journal
Receive 12 print issues and online access
$259.00 per year
only $21.58 per issue
Rent or buy this article
Get just this article for as long as you need it
$39.95
Prices may be subject to local taxes which are calculated during checkout
References
Barrett SCH, Arunkumar R, Wright SI (2014) The demography and population genomics of evolutionary transitions to self-fertilization in plants. Philos Trans R Soc B 369:20130344
Charlesworth B, Jensen JD (2021) Effects of selection at linked sites on patterns of genetic variability. Annu Rev Ecol Evol Syst 52:177–197
Charlesworth B, Jensen JD (2023) Population genetic considerations regarding evidence for biased mutation rates in Arabidopsis thaliana. Mol Biol Evol 40:msac275
Chikhi L, Rodriguez W, Grusea S, Santos P, Boitard S, Mazet O (2018) The IICR (inverse instantaneous coalescence rate) as a summary of genomic diversity: insights into demographic inference and model choice. Heredity 120:13–24
Garud N, Messer P, Petrov D (2021) Detection of hard and soft selective sweeps from Drosophila melanogaster population genomic data. PLoS Genet 17:e1009373
Harris RB, Sackman A, Jensen JD (2018) On the unfounded enthusiasm for soft selective sweeps II: examining recent evidence from humans, flies, and viruses. PLoS Genet 14:e1007859
Jensen JD (2009) On reconciling single and recurrent hitchhiking models. Gen Biol Evol 1:320–324
Johri P, Aquadro CF, Beaumont M, Charlesworth B, Excoffier L, Eyre-Walker A et al. (2022b) Recommendations for improving statistical inference in population genomics. PLoS Biol 20:e3001669
Johri P, Charlesworth B, Jensen JD (2020) Toward an evolutionarily appropriate null model: jointly inferring demography and purifying selection. Genetics 215:173–192
Johri P, Eyre-Walker A, Gutenkunst R, Lohmuller K, Jensen JD (2022c) On the prospect of achieving accurate joint estimation of selection with population history. Gen Biol Evol 14:evac088
Johri P, Riall K, Becher H, Excoffier L, Charlesworth B, Jensen JD (2021) The impact of purifying and background selection on the inference of population history: problems and prospects. Mol Biol Evol 38:2986–3003
Johri P, Stephan W, Jensen JD (2022a) Soft selective sweeps: addressing new definitions, evaluating competing models, and interpreting empirical outliers. PLoS Genet 18:e1010022
Maynard Smith J, Haigh J (1974) The hitch-hiking effect of a favourable gene. Genet Res 23:23–35
Tajima F (1989) Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123:585–595
Thornton KR, Jensen JD (2007) Controlling the false-positive rate in multilocus genome scans for selection. Genetics 175:737–750
Zhong L, Zhu Y, Olsen KM (2022) Hard versus soft selective sweeps during domestication and improvement in soybean. Mol Ecol 31:3137–3153
Acknowledgements
This work was supported by the National Institutes of Health grant R35GM139383.
Author information
Authors and Affiliations
Contributions
JDJ wrote the manuscript.
Corresponding author
Ethics declarations
Competing interests
The author declares no competing interests.
Additional information
Publisher’s note Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
Associate editor: Sara Goodacre.
Rights and permissions
About this article
Cite this article
Jensen, J.D. Population genetic concerns related to the interpretation of empirical outliers and the neglect of common evolutionary processes. Heredity 130, 109–110 (2023). https://doi.org/10.1038/s41437-022-00575-5
Received:
Revised:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1038/s41437-022-00575-5