Antenatally detected short long bones in the presence of normal cranial and abdominal growth parameters present a diagnostic and counselling challenge. Constitutional small stature and early placental insufficiency are diagnoses of exclusion, which should only be considered once the possibility of cytogenetic abnormalities and the presence of an underlying skeletal dysplasia have been explored. With the growing availability of prenatal array comparative genomic hybridisation (array CGH) pertinent cytogenetic changes can now be readily detected. Despite the increasing accessibility of high-throughput sequencing technology, accurate antenatal diagnosis of skeletal dysplasias is impeded by their broad genetic and phenotypic heterogeneity [1, 2]. Features of skeletal dysplasia such as epiphyseal stippling, bowing of the long bones, aberrant bone mineralisation, and fractures are not always present on antenatal scanning. Furthermore, disproportionate limb development may be a late sign as exemplified by achondroplasia where short long bones are rarely detected before the third trimester [3, 4].

The short stature homeobox (SHOX)-containing gene encodes a paired related homeodomain transcription factor, which plays an essential and dosage-sensitive role in linear growth, and in limb development. In the complete absence of SHOX, patients develop Langer Mesomelic Dysplasia (LMD), a skeletal dysplasia characterised by marked mesomelic and rhizomelic limb shortening resulting in severe disproportionate short stature [5].

SHOX haploinsufficiency results in a range of phenotypes. In its most severe form, SHOX haploinsufficiency causes Leri–Weill Dyschondrosteosis (LWD), which is classically characterised by short stature, mesomelic limb shortening, and an abnormality of the forearms known as Madelung deformity [6, 7]. Madelung deformity describes the bowing of the radius and the dorsal dislocation of the ulna caused by the premature fusion of the anteromedial portion of the distal growth plate of the radius [8]. Although subtle radiographic changes may be detectable from infancy, visible deformity does not typically present until late childhood [9, 10]. LWD has a female preponderance, which has been suggested to reflect the influence of oestrogen on the growth plate [11].

In its mildest form, SHOX haploinsufficiency may be difficult to diagnose. The most consistent feature in these patients is short stature, with other clinical features being absent, or difficult to detect. The prevalence of molecular defects in SHOX among this group of patients is not clear as relevant studies have varied considerably with regard to the clinical criteria used to recruit subjects, the molecular testing strategies, which have been employed, and importantly their evaluation of control subjects [12,13,14]. A study examining the coding region and downstream enhancer elements of SHOX in a cohort of French children with short stature (height of –2 SDS or less), suggested that SHOX haploinsufficiency may account for as many as 17% of cases of isolated short stature [15].

SHOX is encoded in the pseudoautosomal region 1 (PAR1) at the distal end of the X and Y chromosomes; a highly repetitive region, which is susceptible to deletion and duplication events. The molecular basis of SHOX haploinsufficiency is diverse comprising partial or whole gene deletions, partial gene duplications, deletions and duplications of upstream or downstream enhancer elements and missense sequence variants [16,17,18,19,20]. Detailed comparison of patients with similar genotypes at the SHOX locus has yet to reveal any clear genotype–phenotype correlations.

Although longitudinal studies have suggested that failure of linear growth in SHOX haploinsufficiency is measureable from an early age, SHOX deficiency is rarely diagnosed before late childhood [9, 10, 21]. Recombinant growth hormone administered by daily subcutaneous injection is a safe and effective treatment for growth failure in SHOX haploinsufficiency [22].

Here, we report five infants with antenatally detected short long bones attributable to SHOX haploinsufficiency. These cases demonstrate that SHOX regulates skeletal development in utero and suggest that SHOX deficiency is an important differential for moderately shortened long bones in the second and third trimesters. Early diagnosis of SHOX deficiency will enable accurate genetic counselling and may facilitate the optimal timing of hormonal treatment.

Subjects and methods

All patients included in this study were referred to the clinical genetics service following the identification of short long bones on routine antenatal scanning. Phenotypic data were collected by review of medical records, review of imaging, patient contact, and clinical photographs. Each patient has been examined by at least one of the authors. In this report, LWD denotes the presence of relative short stature, mesomelia and Madelung deformity with or without other features of SHOX deficiency. Limb disproportion was characterised as affecting proximal segments (rhizomelic shortening) or intermediate segments (mesomelic shortening) by clinical evaluation of the surface anatomy. Formal assessment of limb proportions by radiograph was not undertaken. Anthropomorphic measures were made using standard equipment.

Genomic DNA was extracted using standard protocols. Screening of SHOX for missense sequence variants, deletions, and duplications, was performed by Sanger sequencing and multiplex ligation-dependent probe amplification (MLPA) analysis. Array CGH data were examined using bluefuse analysis software. Cell preparations and karyotype analysis were done using standard protocols. All variants are publically available at the gene variant database (patient IDs 00116800, 00116798, 00116801, 00115467, and 00117188).


Case 1

A 19-year-old woman, gravida 3 para 0, underwent routine ultrasound examination at 20 + 1 weeks gestation revealing a discrepancy in the foetal measurements with significant shortening of the limbs (Table 1). No additional structural abnormalities were detected. Uterine artery dopplers demonstrated normal placental blood flow (sum of pulsatility indices for the uterine arteries <2.5) and first trimester aneuploidy screening predicted that the foetus was unlikely to be affected by trisomy 21.

Table 1 Summary of the clinical and molecular findings in each case

The patient (II-2 in Family A, Fig. 1) had a dominant family history of mild short stature. On examination, her head circumference was 58.0 cm (3.3 SDS), her height was 151.5 cm (−1.8 SDS), her sitting height was 80.0 cm (−2.5 SDS), her arm span was 133.0 cm (arm span/height ratio, which should approach 1 was 0.88), and her lower segment was 74.0 cm (upper segment/lower segment ratio, which should approach 1 was 1.05). Her pre-pregnancy weight was 59.5 kg (0.2 SDS). She had a high arched palate, sloping shoulders, and short forearms with bilateral Madelung deformity (panels a and b, Fig 2). Examination of the father was unremarkable; his height was 178.0 cm (0.5 SDS).

Fig. 1
figure 1

Pedigrees of the families presented in this study. Individuals who have molecularly confirmed SHOX haploinsufficiency are shaded in black. Individuals with OI type 1 are shaded in grey. Height SDS is shown where available. The arrow in each pedigree indicates the infant in each of our cases presenting in utero with short long bones on routine antenatal scanning

Molecular analysis of the SHOX gene in a maternal blood sample by MLPA revealed a heterozygous deletion of exons 1–6 confirming a diagnosis of LWD (Table 1). A female infant was delivered at 38 + 4 weeks gestation weighing 2.551 kg (2–9th centile). On examination at 8 months, her head circumference was 45.0 cm (50th centile), and her length was 66.0 cm (9th centile). The infant had mesomelic limb shortening; analysis of the SHOX locus verified that she had inherited her mother’s whole gene deletion.

Case 2

A 21-year-old woman, gravida 2 para 0, underwent routine ultrasound examination at 20 weeks gestation, which was unremarkable. A further antenatal scan was organised at 29 + 3 weeks gestation in view of maternal illness. This examination detected significant shortening of the limbs (Table 1). Placental blood flow was normal and karyotype analysis of an amniotic fluid sample did not detect any cytogenetic abnormalities.

Maternal examination was unremarkable; her height was 165.0 cm (0.5 SDS). The father (II-2 in Family B, Fig. 1) had a family history of short stature. On examination, his weight was 72.0 kg (0.4 SDS), his head circumference was 55.5 cm (0.3 SDS), his height was 162.0 cm (−1.9 SDS), and his sitting height was 91.0 cm (−0.8 SDS). He had sloping shoulders with rhizomelic limb shortening and muscular hypertrophy. He did not have a Madelung deformity (panel c, Fig 2).

Molecular analysis of the SHOX gene in the father revealed that he was heterozygous for a missense sequence variant in exon 4 of SHOX (Table 1). This variant resulted in the substitution of a tryptophan residue for a serine residue within the homeobox domain of the protein and has previously been reported as affecting protein function.

A female infant was delivered at 40 + 6 weeks gestation weighing 3.115 kg (25–50th centile). Her birth length was 48.0 cm (9–25th centile). On examination at 2 months of age, her head circumference was 39.0 cm (50th centile), her length was 56.0 cm (25th centile), and her weight was 5.440 kg (50–75th centile). She had rhizomelic limb shortening (panel d, Fig 2). Sequence analysis of the SHOX gene confirmed that she had inherited the missense sequence variant that had been found in her father.

Case 3

A 42-year-old woman, gravida 5 para 1, underwent routine ultrasound examination at 19 + 6 weeks. Long bone measurements were predominantly in the normal range but with relative shortening of the fibulae and ulnae (Table 1). Specialist input was requested in the pregnancy because the patient had a dominant family history of Osteogenesis Imperfecta (OI) type 1.

Since the patient herself (II-2 in Family C, Fig. 1) had never had any fractures she was reassured that her pregnancy was unlikely to be at risk of being affected by OI type 1. Importantly, there was a dominant family history of short stature, which did not completely segregate with the OI in the family. On examination, her height was 155.0 cm (−1.2 SDS). She had bilateral Madelung deformity and mesomelic limb shortening. Examination of the father was unremarkable.

A clinical diagnosis of LWD was made; fluorescence in-situ hybridisation of the coding and enhancer regions of SHOX as well as Sanger sequencing of the coding exons of SHOX was undertaken, but no clinically significant changes were identified. Antenatal scanning at 25 + 6 weeks, 32 + 1 weeks, and 36 + 1 weeks demonstrated persistent relative shortening of the fibulae and ulnae suggesting that the foetus was likely to have inherited LWD.

A male infant was delivered at 40 weeks gestation. At 17 days of age, he weighed 3.500 kg (25–50th centile) and his length was 51.5 cm (25–50th centile). On examination at 15 months of age, his length was 77.5 cm (25–50th centile) and he had mesomelic shortening of his lower limbs. The advent of MLPA analysis of the SHOX gene confirmed that mother and baby were both heterozygous for a deletion of exons 4–6b corresponding to an intragenic deletion within the SHOX homeodomain (Table 1).

Case 4

A 33-year-old woman, gravida 2 para 1, underwent routine ultrasound examination at 20 + 6 weeks gestation, which demonstrated significant shortening of the limbs (Table 1). No other structural abnormalities were detected and first trimester aneuploidy screening predicted a 1:10,000 risk of the pregnancy being affected by trisomy 21.

The patient (II-2 in Family D, Fig. 1) had a dominant family history of mild short stature. Her head circumference was 55.0 cm (0.6 SDS) and her height was 154.1 cm (−1.3 SDS). Her pre-pregnancy weight was 63.6 kg (0.4 SDS). She had short forearms with a prominent lumbar lordosis. Examination of the father was unremarkable; his height was 180.4 cm (0.8 SDS).

Genetic testing of SHOX in a maternal blood sample was organised based on the patient’s family history and clinical examination findings. Sequencing analysis revealed a single base pair deletion in exon 3 of SHOX leading to a frameshift and premature termination of the protein sequence (Table 1).

A male infant was delivered at 42 weeks gestation. Genetic testing confirmed that he had inherited his mother’s single base pair deletion in SHOX. On examination at 2 months of age, his head circumference was 38.5 cm (2–50th centile), his length was 56.4 cm (9–25th centile), and his weight was 6.320 kg (75–91st centile). His growth was proportionate. At 5 months of age, his head circumference was 43.8 cm (50th centile), his length was 63.0 cm (9th centile), and his weight was 8.290 kg (75–91st centile). At that stage, his legs were short in comparison with his trunk. His growth was monitored closely and he was started on daily subcutaneous growth hormone therapy at 3 years of age when his height fell to the 2nd centile. When he was last seen at 4 years of age he had sloping shoulders, a pectus deformity of the chest and short legs. His linear growth had improved in response to growth hormone therapy and his height was on the 25th centile.

Case 5

A 36-year-old woman, gravida 3 para 1, who had lost a previous pregnancy with trisomy 21 requested chorionic villus sampling at 12 + 5 weeks gestation for aneuploidy testing. Quantitative Fluorescence-Polymerase Chain Reaction analysis of chromosomes 13, 18, 21, and X was normal; however, an additional solitary Y chromosome sequence was unexpectedly amplified prompting further cytogenetic studies. Karyotype analysis followed by array CGH demonstrated an unbalanced translocation of the sex chromosomes. The foetus had a normal X chromosome and a sex chromosome comprised of material from the X and Y chromosomes as a result of a de novo translocation between the short arm of the X chromosome and the long arm of the Y chromosome in paternal meiosis described as 46,X,der(X)t(X;Y)(p22.3;q11.22). Array CGH delineated the region of imbalance as being NC_000023.10:g.(?_60726)_(3253817_3267652)del showing that the foetus was monosomic for a 3.2 Mb region of Xp encompassing PAR1 and extending approximately 600 kb beyond the PAR1 boundary into the non-PAR1 region. Importantly, the Yq derived material was non-coding and therefore unlikely to have any clinical consequences.

Ultrasound examination at 19 + 3 weeks detected significant shortening of the long bones (Table 1). There was no relevant family medical history and examination of both parents (I-1 and I-2 in Family E, Fig. 1) was unremarkable; maternal height was 168.0 cm (1.0 SDS) and paternal height was 195.0 cm (3.1 SDS).

The infant was delivered at 41 + 5 weeks gestation weighing 3.730 kg (50–75th centile). Her head circumference at birth was 37.0 cm (98th centile) and her birth length was 53.0 cm (91st centile). On examination at 3 weeks of age, her weight was 4.280 kg (75–91st centile), her head circumference was 38.5 cm (98th centile), and her length was 52.4 cm (50th centile). Her limbs were slightly short compared with her trunk; the remainder of her clinical examination, including examination of the external genitalia was unremarkable. When she was last reviewed at 16 months of age her height was on the 50th centile and she was growing proportionately. At that stage, she did not have any significant medical or developmental problems.


SHOX haploinsufficiency caused by deletions, duplications, and missense sequence variants involving the SHOX locus presents with a variable clinical phenotype of which the most consistent feature is short stature [23]. Although failure of linear growth is reported from an early age, in the absence of a family history of SHOX haploinsufficiency the condition is rarely diagnosed before late childhood when additional clinical features may become apparent. It is clear, from published reports that many cases of SHOX haploinsufficiency with a mild phenotype remain undiagnosed. Here, we describe five cases of SHOX haploinsufficiency, which presented prenatally with short long bones on routine antenatal scanning.

Studies of SHOX expression in human embryos have demonstrated SHOX mRNA expression in the undifferentiated mesenchymal tissue of the limb buds from 33 days post conception. The subsequent spatial and temporal pattern of SHOX expression within the developing mesenchyme suggests that it is involved in primordial skeletal formation [24]. A study where a human isoform of SHOX was expressed under the control of a murine COL2A1 promoter and enhancer in a transgenic mouse model, and gene expression was examined by microarray, has suggested that SHOX regulates the levels of several extracellular matrix genes during early limb development [25].

LMD where there is complete absence of functional SHOX protein can present antenatally with severe shortening and possible bowing of the long bones along with absent or hypoplastic ulnae and fibulae [26, 27]. To our knowledge, SHOX haploinsufficiency has not previously been reported to present in utero.

The effects of SHOX haploinsufficiency on prenatal growth have been studied by retrospectively examining birth length data from subjects with LWD. The results of these studies have varied depending on the population used for comparison. Compared with population reference values, the mean birth length in patients with LWD was −0.59 SDS, whereas when unaffected siblings were used for comparison, the mean birth length in patients with LWD was reported as −2.14 SDS [21, 28]. These data suggest that SHOX haploinsufficiency has a significant effect on linear growth in utero.

The detection of short long bones on antenatal scanning should prompt expert ultrasound evaluation of the constituents of the foetal skeleton and the exclusion of concurrent extra-skeletal abnormalities. The presence and pattern of findings can direct further assessment. Isolated short long bones are commonly observed as a manifestation of intra uterine growth retardation (IUGR) and have also been described as a presenting feature of achondroplasia [29]. Here, we expand the differential diagnosis of antenatally detected short long bones to include SHOX haploinsufficiency by describing five cases, which presented prenatally with moderate shortening of the long bones. Four of our cases presented in the second trimester. This is distinct from IUGR, which generally presents in the third trimester, unless there is severe placental insufficiency, which would be reflected in abnormal uterine artery Doppler waveforms and low levels of pregnancy-associated plasma protein A in the first trimester. It also distinguishes SHOX haploinsufficiency from achondroplasia where long bone growth is well characterised as being preserved until 22 weeks gestation [30].

In each of our inherited cases, the diagnosis of SHOX haploinsufficiency was made by targeted genetic analysis of the SHOX locus in a previously undiagnosed parent with clinical features that were suggestive of SHOX deficiency. Affected parents heights’ ranged from −1.9 to −1.2 SDS. This is consistent with previous reports suggesting that the mean adult height in SHOX deficiency is variable, and that even within the context of clinical cohorts with their inherent ascertainment bias, many individuals with SHOX deficiency have heights within the normal range [9]. In three cases, mesomelic limb shortening, which is a frequently associated with SHOX haploinsufficiency was seen. In one case, rhizomelic limb shortening, which is less characteristic, but was described among the earliest families with molecularly confirmed SHOX haploinsufficiency, was noted [6, 31]. The distinct but overlapping clinical characteristics seen in affected parents encapsulates the variable expressivity of SHOX haploinsufficiency. The generous influence of modifying factors on the phenotypic consequences of SHOX deficiency is also reflected in the postnatal phenotypes observed in our series; case 5 where both parents were of above average height exemplifies that SHOX haploinsufficiency can be well tolerated within a favourable genetic context.

The SHOX gene was originally cloned by comparing the heights of individuals with terminal deletions and interstitial rearrangements of PAR1 to delineate the region, which was critical to linear growth [31,32,33]. Our de novo case of SHOX haploinsufficiency was haploinsufficient for SHOX due to a translocation between Xp22.3 and Yq11.22 during paternal meiosis resulting in a derivative chromosome, which was monosomic for the distal portion of Xp extending 600 kb beyond the PAR1 region. Unbalanced translocations between the X and Y chromosomes have previously been described in patients with LWD [34, 35]. These reports suggest that if the monosomic region of Xp extends beyond PAR1 male carriers of the derivative chromosome may be more severely affected than their female counterparts due to the contiguous gene deletion of regions, which are unique to the X chromosome [36,37,38]. In our patient, the deleted region included Arylsulfatase E, which is known to cause Chondrodysplasia punctata in males. The clinical relevance of the other genes within the deleted region is unclear.

Early diagnosis of SHOX haploinsufficiency in our patients enabled accurate prenatal genetic counselling. In inherited cases, parents were relieved to receive a diagnosis, which their personal experience had informed them had a good prognosis. In our de novo case, the diagnosis was overshadowed by the other consequences of the translocation. Prenatal diagnosis also facilitated optimal timing of any growth hormone treatment. Administration of recombinant human growth hormone by daily subcutaneous injections is a safe and effective therapeutic option for patients with short stature secondary to SHOX deficiency [39,40,41]. In a prospective multicentre study with longitudinal follow-up, 57% of patients with SHOX deficiency treated with recombinant human growth hormone attained a final height within the population reference range; similar figures were observed among SHOX-deficient patients treated in routine clinical practice [22, 40].

Our experience suggests that SHOX deficiency should form part of the differential diagnosis of generalised or localised moderate shortening of the foetal long bones in the context of normal bone density and mineralisation. We advocate a low threshold for genetic testing particularly where there is a dominant family history of short stature or features suggestive of SHOX deficiency in one of the parents. However, given the variable phenotype and incomplete penetrance of SHOX deficiency, it should be carefully considered in all antenatal presentations of isolated short long bones. Four of our cases presented in the second trimester suggesting that SHOX deficiency should be given particular consideration in early presentations of disproportionate growth. Whether this proves to be a sensitive indicator of SHOX haploinsufficiency in the prenatal context will require more systematic evaluation. Importantly, in our series antenatal presentation of SHOX haploinsufficiency was not reflective of severe postnatal growth restriction and parents should be reassured as such.

Fig. 2
figure 2

Clinical photographs of individuals with molecularly confirmed SHOX haploinsufficiency. a, b Affected mother in case 1, II-2 in Family A showing mesomelic upper limb shortening, sloping shoulders and Madelung deformity. c Affected father in case 2, II-2 in Family B showing rhizomelic limb shortening, sloping shoulders, and muscular hypertrophy. d Affected female infant in case 2, III-2 in Family B at 2 months of age showing rhizomelic limb shortening.