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Fluorescence microscopic visualization of functionalized hydrogels


Functionalized hydrogels play an important part in chemistry, biology, and material science due to their unique microstructures. Characterization of these microstructures is the fundamental issue to improve the optical, mechanical, and biochemical performance of functionalized hydrogels. With the rapid development of fluorescence microscopy, a growing number of researchers have attempted to utilize this easily operated, noninvasive, and high-contrast technique to visualize the fine microstructure of hydrogels. Integration of a confocal system into fluorescence microscopy allows the sectioning and reconstruction of 3D hydrogel networks. The live recording function offers in situ and real-time images of dynamic behaviors within hydrogels. The development of super-resolution fluorescence microscopy has significantly promoted imaging quality from the submicron scale to the nanoscale. Based on these spectacular achievements, we reviewed the recent advances in fluorescence microscopic visualization of internal morphologies, mechanical properties, and dynamic structural changes. The scope of this review is to provide inspiration for researchers in chemistry, material science, and biology to study and fabricate functionalized hydrogels with the assistance of fluorescence microscopic visualization.


Hydrogel-based artificial materials possess the intrinsic characteristics of a high water content and softness are hydroscopic, thixotropic, elastic, and biocompatible1. These extraordinary properties have boosted the rapid development of functionalized hydrogels in a variety of chemical and biological applications, such as tissue engineering2, drug delivery3, 3D printing4, and soft robotics5. To further optimize the functionality and broaden the application prospects of hydrogels, advanced characterization techniques are urgently required for a deeper understanding of the structure–function relationship. In comparison with spectroscopic and macroscopic methods, microscopic techniques are capable of visualizing the hydrogel microstructure in a direct manner. In earlier research, electron microscopy was utilized to provide nanoscale 2D micrographs of 3D hydrogel networks, but drying treatment for sample preparation is necessary6. This limitation hinders observation of the native morphology of the hydrogel microstructure and dynamic structural changes. Therefore, alternative microscopic techniques must be established to meet the requirements of in situ and real-time visualization in aqueous environments.

In recent decades, fluorescence microscopy has undergone a booming development from widefield fluorescence microscopy to confocal laser scanning microscopy (CLSM) and then to super-resolution microscopy7,8,9,10. Compared to widefield fluorescence microscopy, CLSM significantly enhanced the image resolution by optical sectioning of a thick sample to avoid the interference of out-of-focus light8. To acquire resolutions limited to the realm of electron microscopy, several super-resolution microscopies based on different technical routes were invented9,10. The Nobel Prize in Chemistry in 2014 was awarded to three scientists for their great contributions to the development of superresolved fluorescence microscopy (Table 1)11,12. These revolutionary achievements inspired material scientists to take advantage of fluorescence microscopic techniques to visualize functionalized hydrogels. The preparation-free nature and easy operation of fluorescence microscopy allow ultrafast, noninvasive, and high-contrast visualization of hydrogel microstructures.

Table 1 Basic properties of different fluorescence microscopy techniques.

The prerequisite for fluorescence microscopic imaging of hydrogel microstructures is appropriate labeling of the network or aqueous phase. To date, diverse types of fluorophores including organic dyes13, fluorescent proteins14, and nanocrystals15 have been designed and synthesized. Due to the extensive options, functionalized hydrogels can be rationally modified with fluorophores by covalent bonding, hydrophobic interactions, hydrogen bonding, and electrostatic attraction. The high contrast between labeled and unlabeled phases is probed by fluorescence microscopy for high-quality imaging. Benefiting from the optical sectioning and reconstruction functions of confocal systems8, the 3D microstructure of hydrogel networks can be precisely visualized. Dynamic image generation and live video streams provide visualization of the in situ structural changes and real-time matter transport. To investigate hydrogel microstructures with powerful fluorescence microscopy imaging systems, a great number of innovative and impressive imaging strategies have been established to improve the performance of functionalized hydrogels.

In this review, we will summarize the current progress in the structures, properties, and applications of functionalized hydrogels visualized by fluorescence microscopy (Fig. 1). The corresponding topics focus on the internal microstructure and dynamic changes of hydrogel networks, chemical and physical characteristics of hydrogels, and broad applications of functionalized hydrogels. We will provide our thinking and predictions on future challenges and the development of fluorescence microscopic strategies for visualizing functionalized hydrogels. The goal of this review is to provide viable opportunities and inspirations for researchers from a wide range of disciplines.

Fig. 1: Recent progress in fluorescence microscopic visualization of functionalized hydrogels.
figure 1

Schematic illustrating the visualization of different types of hydrogel networks, observation of structural transitions, and super-resolution imaging based on fluorescence microscopy.

Internal microstructure of hydrogels

Comprehensive investigation of the internal microstructures of hydrogel networks is of particular interest for the regulation of chemical, physical, and biological performance. Characterization methods based on visualization techniques are the most direct route to study these hydrogel microstructures. Among the visualization techniques, fluorescence microscopy has raised great attention in recent decades due to its characteristics, such as high contrast, noninvasiveness, no required preparation, and simple operation. Thus, a growing number of studies have reported the design and application of novel fluorescence visualization strategies for understanding and improving the properties of functionalized hydrogels. Since hydrogels usually lack fluorescence emission ability, fluorescent markers should be attached to the chains before or after the synthesis of hydrogels. For example, 5-(4,6-dichlorotriazinyl) aminofluorescein (DTAF) is widely used as a fluorescent indicator by forming covalent bonds with the primary hydroxyl groups of a variety of hydrogels. Accordingly, the internal microstructures of hydrogels stained with appropriate fluorophores can be successfully visualized by fluorescence microscopy.

Synthetic hydrogel networks

Microscopic investigation of the continuous, bulk, and 3D networks of poly(vinyl alcohol) (PVA) originating from freezing-induced phase separation was accomplished by confocal imaging. Covalently labeled PVA networks with DTAF showed the formation of water-rich and PVA-rich phases, implying that phase separation resulted from spontaneous spinodal decomposition after cooling. Confocal images captured at different depths demonstrated that the network is composed of a thin surface with a thickness of a few microns and a bulk phase with uniform porosity. No porosity gradient or structural orientation was observed throughout the entire PVA network. Increasing the PVA concentration led to a smaller pore size and higher tortuosity of the network, which obstructed molecular diffusion16. Confocal imaging was also applied to study the effect of polyethylene glycol (PEG) on the internal pore morphology of PVA hydrogels by annealing treatment. Physically crosslinked PVA hydrogels were prepared by the theta-gel method, which introduced gelling agents such as low-molecular-weight PEG to force separation and crystallization of PVA without a freeze–thaw (FT) cycle. The as-prepared PVA hydrogel containing PEG was named AG (as-gelled), while the other hydrogel exchanged with water after gelation was named DP (dePEGed). CLSM images indicated that the porous structures of AG gels and the collapsed structures of DP resulted from preservation by PEG during vacuum dehydration and subsequent annealing (Fig. 2a). The crystallinity of both AG and DP gels increased after the annealing step, but the former had a high equilibrium water content (EWC), and the latter showed high creep resistance17. The application of PVA-based hydrogels for synthetic articular cartilage requires a balance between a high EWC for lubricity enhancement and high creep resistance for mechanical stability. A hydrophilic polymer, polyacrylamide (PAM), was added to replace PEG to increase the lubricity and strength of the interpenetrated network by increasing water uptake and filling the pores. Fluorescence imaging showed that the pores of PVA-PAM gels were more uniform and smaller than those of PVA-PEG gels and that the pore size increased with increasing PAM content (Fig. 2b). Based on this guidance, PVA-PAM gels with higher creep resistance and lower relative coefficient of friction were obtained at lower PAM contents because of the less reduced crystallinity of PVA and higher permeability upon loading18.

Fig. 2: Formation mechanisms of synthetic hydrogels and CLSM images of networks.
figure 2

a Schematic illustration of PVA theta-gel formation with corresponding CLSM images of collapsed DG gels and porous AG gels before and after annealing. Reproduced with permission17. Copyright 2007, Elsevier. b Schematic showing the formation of an interpenetrated PVA-PAM network with corresponding CLSM images of the raw and annealed PVA-PAM hydrogels with different weight ratios. Reproduced with permission18. Copyright 2009, Elsevier.

The spatial resolution of CLSM is close to submicron; therefore, super-resolution fluorescence techniques overcoming the diffraction limit of light come into use. Stochastic optical reconstruction microscopy (STORM) is capable of sub-diffraction-limit imaging based on high-accuracy localization of photoswitchable fluorophores19. Overall, STORM images with a super-resolution of 20 nm were obtained by reconstructing the locations of the entire population of fluorophores. Due to the molecular-scale resolution of this technique, STORM has become a versatile tool for biological imaging applications. Recently, this technique has been applied to the visualization of hydrogel networks due to the flexibility of labeling and capability of working in aqueous environments. Interpenetrated hydrogel networks were synthesized by coextrusion of functionalized precursors based on thermoresponsive poly(N-isopropylacrylamide) (PNIPAM) and nonthermoresponsive poly(vinyl pyrrolidone) (PVP). Detailed thermoresponsive phase segregation morphology visualized by direct stochastic optical reconstruction microscopy (dSTORM) indicated that PNIPAM-rich domains were entrapped in the clustered PVP-rich phase, which was consistent with the small-angle neutron scattering (SANS) results. The combination of dSTORM and SANS provided a deeper understanding of the internal morphology of interpenetrated hydrogel networks across multiple resolution scales to guide the fabrication of more effective interpenetrated structures20.

Semi-interpenetrated hydrogel networks are regarded as a safe cleaning tool for the conservation of artworks due to the residue-free and noninvasive nature of these materials. Structural visualization of semi-interpenetrated networks is fundamental to the analysis of matter exchange during cleaning processes. Illumination of these networks can be accomplished by specific fluorescence labeling of solvents (rhodamine 110 or Nile-red) or hydrogel matrices (covalently modified by rhodamine B isothiocyanate or fluorescein isothiocyanate). Recent work has reported a colloidal cleaning system featuring confinement of nanostructured fluids (NSFs) in hydrogel networks for removing pressure-sensitive tape (PST) from paper artworks21. 3D fluorescence imaging of labeled hydrogels and PSTs demonstrated that the penetration depths of NSFs depended on the hydrophilic and hydrophobic compositions of the PST (Fig. 3a). This observation contributed to the control of solvent penetration and lateral migration of the liquid phase, which guaranteed a versatile removal process of PST (Fig. 3b). Another semi-interpenetrated hydrogel network composed of high-molecular-weight PVA (H-PVA) and low-molecular-weight PVA (L-PVA) was designed to remove dirt from modern and contemporary art22. 3D reconstruction fluorescence images showed that FT treatment led to a homogeneous arrangement of pseudohexagonally packed smaller pores for pure H-PVA and a nonordered sponge-like network for semi-interpenetrated H-PVA/L-PVA (Fig. 3c). In the semi-interpenetrated networks, decoiled and solvated H-PVA constituted the gel wall through intermolecular hydrogen bonding, while L-PVA chains collapsed into spherical droplets (Fig. 3d). This twin-chain hydrogel microstructure with ideal mechanical properties, retentiveness, and interconnected porosity guaranteed adhesion to paint layers, control of surface wetting, and safe removal of dirt.

Fig. 3: Confocal imaging of semi-interpenetrated hydrogel networks and their application in artwork conservation.
figure 3

a CLSM images of NSF penetration depths in different types of PST: Filmoplast P (FPP), MagicTape (MT), and ordinary tape (OT). b Procedure of PST removal from an artwork. Reproduced with permission21. Copyright 2018, National Academy of Sciences. c CLSM and scanning electron microscopy images of pure PVA and H-PVA/L-PVA cryogels prepared by different FT cycles. d Confocal imaging of semi-interpenetrated hydrogel networks of H-PVA/L-PVA under different conditions. Reproduced with permission22. Copyright 2020, National Academy of Sciences.

Biomacromolecular hydrogel networks

The internal microstructures of several biomacromolecular hydrogels have been visualized by fluorescence imaging to design biocompatible materials. For example, earlier research studied the influencing factors of neuronal outgrowth in isotropically and magnetically aligned fibrin gels by confocal imaging. Visualization of the fluorescently spiked fibrin network showed that a higher concentration of Ca2+ led to a larger fibril diameter without changing the alignment degree. The combination of CLSM with other characterization techniques provided important information for designing entubulation repair materials based on magnetically aligned fibrin gels23. Recently, a novel method based on the combination of CLSM with a fiber extraction algorithm and turbidity measurements was proposed to study the relation between the structure and diffusivity of solutes within the fibrin network. The fiber extraction algorithm quantitively analyzed the fluorescence images of fibrin networks to determine the average fiber length, total fiber length, hydrogel fiber density, branch density, and fiber connectivity. This quantitative structural analysis demonstrated that changes in the concentrations of fibrinogen, thrombin, factor XIII, and calcium resulted in significant variations in the overall network organization and individual fiber characteristics but only a moderate influence on the relative diffusivity of dextran solutes. Based on these findings, the structural, diffusional, and mechanical characteristics of fibrin hydrogels could be tailored by changing the concentrations of individual constituents for specific applications in tissue engineering24. The structural and mechanical properties of a 3D scaffold comprised of dense type I collagen and endothelial cell biology within the scaffold were studied by fluorescence imaging. Confocal images of the collagen network showed that an increased concentration of collagen could increase only the spatial density of fibers rather than the fiber diameter, indicating that the larger modulus resulted from more fiber entanglement (Fig. 4a). Thus, the window of collagen concentrations was determined for microfabrication and cellular remodeling to control the spatiotemporal chemistry and hydraulic stresses of the scaffold. Integrating microfluidic control within such scaffolds showed the potential for studying spatiotemporal signaling during tumor angiogenesis and vascularized tissue engineering25.

Fig. 4: Confocal imaging of biomacromolecular hydrogel networks.
figure 4

a CLSM images of collagen fibers at different concentrations. Reproduced with permission25. Copyright 2010, Elsevier. b CLSM images of agarose gels with different thickeners: agarose, agarose-alginate, and agarose-xanthan. Reproduced with permission26. Copyright 2013, American Chemical Society. c CLSM images of mixed XG/GB hydrogel networks at different pH values. Reproduced with permission28. Copyright 2016, Elsevier. d CLSM images of potato starch and nonstarch polysaccharide (NSP) composite gels: potato starch, agar-potato starch, and konjac glucomannan-potato starch (from top to bottom). Reproduced with permission29. Copyright 2021, Elsevier.

Polysaccharide hydrogels are widely used as stabilizers, thickeners, and the main structure-forming ingredients in the food and pharmaceutical industries for quality improvement and cost reduction. In most practical applications, mixtures of polysaccharide hydrogels are used to manipulate the material properties by interactions and entanglement of individual components. Microscopic visualization of the internal network of polysaccharide hydrogels provided important insight into the structure-effective relationship to optimize the quality of food and pharmaceutical products. Compared to indirect methods, such as textural and rheological measurements, fluorescence microscopic imaging could visualize the distribution and interaction of individual components in multicomponent food matrices. Several studies have reported the fluorescence visualization of polysaccharide mixtures based on DTAF staining methods. Incorporation of nongelling thickeners into the networks of gelling agents is known to alter the viscoelasticity, gelling temperature, and thermal stability of the resulting hydrogel composites for a wider range of mechanical properties. For example, incorporation of alginate and xanthan into an agarose hydrogel network had a significant impact on the gelation mechanism and thermomechanical properties. Confocal imaging of the agarose hydrogels selectively labeled with DTAF indicated that the addition of the thickeners increased the homogeneity of the network (Fig. 4b). Combining the results of fluorescence imaging and rheology measurements, it was discovered that the weak network of the agarose gel with homogeneously and equally distributed meshes was stabilized by interpenetrated alginate coils. In contrast, rod-like xanthan formed stiff and rigid obstacles to disturb the coil and helix diffusion of agarose chains during gelation, resulting in a less elastic network26. As it is difficult to distinguish the different phases of systems containing multiple hydrogel components with similar properties, a staining method with DTAF was developed to visualize the microstructures in mixed systems. Fluorescence imaging showed that DTAF selectively stained low acyl gellan and simultaneously ensured that the secondary PVA hydrogel remained unstained. The addition of DTAF to the gellan backbone increased the mechanical properties and resulted in phase separation of the mixture. Thus, this method should be employed as a validation method of the investigated structure to supplement other analytical techniques27. Despite the limitations in polysaccharide-polymer systems, the DTAF staining method was successfully applied to polysaccharide-protein and polysaccharide-polysaccharide systems. To design novel thickeners and gelling agents, synergistic gelation of a polysaccharide-protein system consisting of xanthan gum (XG) and gelatin B (GB) was reported. Rheological and microstructural research was conducted to achieve a balance between electrostatic attraction and repulsion to maximize the mechanical properties. Confocal images of XG covalently labeled with DTAF and GB stained with Nile Blue A showed that the mixed XG/GB hydrogel network at pH 5.5 had the smallest characteristic microstructural length scale to obtain the most favorable gelling properties (Fig. 4c). Gelation at lower or higher pH values resulted in strong electrostatic attraction-induced aggregation or electrostatic repulsion-induced phase separation. Furthermore, the addition of salt into the XG/GB network at pH 5.5 could break down the network structure into particles, explaining the sudden decrease in rheological properties. CLSM images, zeta potentials, visual inspection, and the rheological results collectively demonstrated that the microstructure and corresponding rheological properties of this polysaccharide-protein system were driven by electrostatic forces that could be controlled by pH and ionic strength28. The microstructure of polysaccharide-polysaccharide hydrogels and the distribution of individual components were visualized by confocal imaging of DTAF-labeled polysaccharides with different anionic groups. Multiple characterization techniques verified that the labeling of polysaccharides with DTAF had the following advantages: availability in aqueous environments, no impact on the sol-gel transition temperature or gel strength of polysaccharides, and long-term stability as a powder at room temperature. Fluorescence imaging of the mixed network demonstrated that DTAF labelled polysaccharides and confirmed that the secondary polysaccharides remained unstained (Fig. 4d). Therefore, the component distribution, compatibility of mixed polysaccharides, and network formation were directly visualized by CLSM in both hydrated and dehydrated forms29.

Organohydrogel networks

Organohydrogels are a new class of functional materials composed of micro-organogels uniformly dispersed in hydrogel networks. A synergistic fabrication strategy imitating natural biological systems has inspired researchers to synthesize functionalized organohydrogels based on biphasic heterostructures. Diverse characterization techniques were utilized to study heterostructures composed of hydrophobic micro-organogels and a hydrophilic hydrogel matrix. In particular, fluorescence imaging provided high-contrast structural information by visualizing the two domains with specific fluorophores. Several recent works reported the microscopic visualization of binary cooperative phases in organohydrogels and their deformation under strain loading30,31,32,33. Highly stretchable shape memory organohydrogels were synthesized by in situ polymerization of oil and aqueous phase emulsion systems. Excellent thermomechanical performance and shape memory effects originated from the synergistic phase transition of micro-organogels and the elastic hydrogel framework. The reinforced mechanical toughness of organohydrogel networks with increasing volume ratio of micro-organogels suggested a possible microsphere morphology of these microdomains. This assumption was directly confirmed by visualizing the preferentially labeled aqueous phase and semicrystalline species (paraffin30 or poly(stearyl methacrylate)31) encapsulated in the micro-organogels (Fig. 5a, b). Shape memory behaviors were based on the thermoresponsive phase transition of paraffin or poly(stearyl methacrylate) encapsulated in the micro-organogel domains. The shape memory and recovery process were divided into three steps: (i) elongation at temperatures above the melting point (Tm) by softening the organohydrogel domains; (ii) fixation of the temporary shape by cooling below Tm; and (iii) heating above Tm to recover the permanent shape. Corresponding microstructural changes during the whole process were visualized by confocal imaging. Originally, spherical micro-organogels deformed to ellipsoidal shapes upon strain loading, and stripe-like shapes were finally obtained at high elongation. The orientation of the anisotropic heteronetwork was parallel to the direction of stretching, which matched well with the small-angle X-ray scattering measurements. Thus, the organohydrogel was considered to be a spring that stored or released energy when its shape was deformed or recovered. Such thermoresponsive shape memory effects of these organohydrogels were utilized to fabricate smart actuators32 and surface micropatterning33, showing potential applications in soft robots, flexible electronics, and biomedical devices (Fig. 5c, d).

Fig. 5: Shape memory effect of organohydrogel networks and their applications.
figure 5

a Schematic illustrating the formation of organohydrogel microstructures and corresponding CLSM images. b Schematic showing the interfacial tension dominating the shape recovery process and real-time observation of the deforming organohydrogel microstructures during the shape memory process by CLSM. Reproduced with permission30. a, b Copyright 2017, Wiley-VCH. c Stepwise multidimensional shape changes and application in spontaneous unidirectional liquid transport. Reproduced with permission32. Copyright 2018, Wiley-VCH. d Time-dependent images showing unidirectional liquid transport on programmable biomimetic surfaces. c, d Reproduced with permission33. Copyright 2019, Wiley-VCH.

Supramolecular hydrogel networks

Noncovalent supramolecular hydrogels have the potential to become novel intelligent materials because of their sensitive responses to various physicochemical stimuli. The tunability and recyclability of supramolecular hydrogels are ascribed to the reversible assembly and disassembly of gelators. Screening the structural changes by fluorescence imaging during the phase transition could deepen the understanding of supramolecular chemistry.

Earlier research used CLSM to visualize supramolecular hydrogel networks by specific staining of hydrophobic domains. These amphiphilic supramolecular hydrogel scaffolds were constituted by a small library of low-molecular-weight hydrogelators with glycosylated amino acid derivatives (Fig. 6a). Precise diameters of fiber bundles were measured to determine the robust hydrogen-bonding networks formed by hydrophobic packing. One of these hydrogels was applied to release water-soluble molecules such as DNA in a thermoresponsive manner or remove hydrophobic water pollutants by coprecipitation34. Using the same hydrogelator, a novel semiwet peptide/protein microarray was fabricated by spontaneous gel formation. Aqueous cavities in the gel matrix and hydrophobic domains of the fibers were confirmed by CLSM imaging of an environmentally sensitive fluorescent probe entrapped in the amphiphilic network. This semiwet structure could entrap enzymes in the hydrophilic microcavities without substantial loss of activity and bind hydrophobic molecules within the fibers. Based on the enzymatic hydrolysis-induced fluorometric activity, peptide/protein-hydrogel arrays compatible with enzyme activity assays were built to screen enzyme inhibitors. Compared to conventional protein/peptide chips, supramolecular hydrogel arrays are free from chemical attachment of protein/peptide to a two-dimensional and dried substrate, improving the sensitivity and signal/noise ratio35. This powerful strategy was rationally extended to the design of several read-out modes (fluorogenic probe, environmentally sensitive probe, and Förster resonance energy transfer (FRET)-type pair) for evaluating enzymatic activity36. The combination of two similar hydrogelators from the library contributed to the formation of a pH-responsive supramolecular hydrogel in which one hydrogelator provided a stable hydrogel structure and the other acted as a pH stimulus-sensitive trigger. The fibrous microstructure of the mixed hydrogel network was visualized by staining hydrophobic domains with an environmentally sensitive dye. Fluorescence spectra analysis of the selected region in CLSM images enabled interpretation of the hydrophobicity around the position of the dye by different emission peaks. This supramolecular hydrogel was further applied to the controlled release of water-soluble bioactive substances by pH-triggered expulsion of water37. The cooperation of semiwet supramolecular hydrogels with artificial receptors produced an efficient molecular recognition system for sensing and discriminating phosphate derivatives. Colocalization and time-dependent analysis by confocal imaging directly demonstrated that the location of receptors could dynamically switch between hydrophobic hydrogel fibers and hydrophilic aqueous cavities upon guest binding. On this basis, three distinct types of discrimination systems were proposed for sensing phosphate derivatives: (i) a photoinduced electron transfer type, (ii) an environmentally sensitive type, and (iii) an artificial FRET type. Extension of these systems for rapid and high-throughput sensing of phosphate derivatives was accomplished by analyzing fluorescence intensity changes, fluorescence wavelength shifts, and ratiometric fluorescence changes38. Another novel hybrid sensing system for discriminating polyanions was developed based on the combination of a semiwet supramolecular hydrogel matrix, enzymes, and mesoporous silica particles (NH2-MCM41) with anion-exchange ability. Fluorescence imaging showed that the hybrid system was composed of three orthogonally distinct microdomains: cationic nanopores of NH2-MCM41, hydrophobic nano/microfibers, and the aqueous phase of the hydrogel. Fluorophores entrapped in NH2-MCM41 were first released by the anion-exchange reaction of polyanions and then translocated to hydrophobic fibers by enzymatic hydrolysis, facilitating the FRET sensing of polyanions (Fig. 6c). Real-time fluorescence imaging directly visualized this sensing mechanism by monitoring dynamic location changes of fluorophores during the sensing process, and colocalization analysis showed fluorophores ultimately located in the hydrophobic core of fibers (Fig. 6d). In summary, the sensitive, cooperative, and high-throughput discrimination ability of the hybrid system was ascribed to the efficient dephosphorylation catalyzed by enzymes, orthogonal formation of distinct domains, and sufficient mobility of the embedded molecules39.

Fig. 6: Visualization of supramolecular hydrogel networks.
figure 6

a Schematic illustration of the hierarchal supramolecular structures and corresponding confocal micrographs. Reproduced with permission34. Copyright 2002, American Chemical Society. b Schematic illustrating the lipidation-induced coassembly of helical secondary structures for in vivo imaging. Top and bottom present hydrogel formation by a nonfluorescent lipidated β3-tripeptide with a fluorophore-labeled nonlipidated or lipidated β3-tripeptide. Reproduced with permission40. Copyright 2018, American Chemical Society. c Schematic showing the construction of a fluorescent dye-encapsulated MCM-enzyme-supramolecular hydrogel hybrid sensory system and the sensing mechanism. d Fluorescence sensing based on FRET emission changes facilitated by translocation of a coumarin fluorophore from the interior of NH2-MCM41 to the supramolecular fiber. Reproduced with permission39. c, d Copyright 2009, American Chemical Society.

Fluorescence microscopic visualization was also applied to study the supramolecular self-assembly of biomolecules such as peptides and phospholipids. Self-assembling β3-tripeptide hydrogels based on noncovalent interactions can be endowed with powerful functionalities by coassembly of monomers with diverse chemical modifications. Confocal and stimulated emission depletion (STED) imaging of the hydrogel networks confirmed the successful coassembly of nonfluorescent lipidated monomers and dye-labeled lipidated monomers by the formation of unique 14-helical secondary structures through hydrogen-bonding interactions (Fig. 6b). β3-tripeptide hydrogels covalently modified with a far-red-emitting fluorophore were administered to mice via subcutaneous injection for real-time, long-term, and in vivo animal imaging. CLSM imaging of the sectioned gel injection site indicated the integrity of implanted β3-tripeptide hydrogels over a 14-day period. The most relevant application of β3-tripeptide hydrogels is in vivo fluorescent monitoring for chronic disease involving long-term therapeutic treatment40. Another work reported the formation of a helical structure during the dynamic self-assembly process of peptide fibrils studied by STORM. Bulk morphologies of peptide hydrogel networks were visualized within an increased field of view for quantification of the contour and persistence lengths of individual fibrils. By imaging the 2D projection of a 3D structure, STORM removed surface adsorption-induced ambiguity and measured the true structure of fibril networks. Long-term imaging of the two separate fibrils showed no evident monomer exchange over a 4-week period. These results demonstrated the potential applications of STORM in the design of synthetic peptides and the study of self-assembly behaviors41. A novel hydrogel with a high water content (95%) was formed by supramolecular aggregation of phospholipids and fatty acids. By controlling the pH of the lipid dispersion, phospholipid mixtures tended to form supramolecular hydrogels with a microscopically spongy morphology rather than vesicular or micellar aggregates. Confocal imaging and cryogenic transmission electron microscopy showed that the hydrogel network was composed of aggregates of giant multilamellar vesicles (5–20 μm diameter) with the coexistence of nanosized unilamellar vesicles (150 nm diameter). This structured but easily deformable hydrogel has promising prospects in topical and ocular applications requiring the incorporation of either lipophilic or hydrophilic drugs42.

Structural changes of hydrogels

The chemical and physical properties of functionalized hydrogels can be easily altered by structural changes, such as gelation processes, sol-gel/gel-sol transitions, and phase separation. Direct visualization of these dynamic structural changes will deepen the understanding of the structure–function relationship. The in situ and real-time characteristics of fluorescence microscopy offer an ideal platform to visualize these structural changes at the microscale. Benefiting from the dynamic screening function of fluorescence microscopy, an increasing number of visualization strategies have been successfully established to study the mechanisms of the gelation process, regulation of self-assembly behaviors, and control of matter release.

Gelation process of synthesized hydrogels

The gelation process of chitosan (CS) hydrogels by alkaline neutralization of solubilized CS in acidic aqueous medium was visualized by fluorescence microscopic imaging43,44. This synthesis route contributed to the formation of a hierarchically oriented structure along the diffusion direction of OH. Confocal imaging of the labeled CS hydrogels showed that the oriented microstructure evolving from the surface to the bulk could be divided into three gelation regimes that were separated by two structural transition zones (Fig. 7a). The first zone close to the surface was a smooth and compact layer constituted by entangled CS chains due to fast neutralization. The second zone was composed of some large pores or capillaries oriented parallel to the advancing direction of OH. In the third zone, a finer oriented microstructure with uniform porosity replaced the capillary morphology because of the decreased advancing rate of OH (Fig. 7b). Thus, the layerwise characteristics of the microstructure could be considered as the stacking of numerous hydrogel layer units along the OH diffusion direction. The corresponding formation mechanism was proposed based on the dynamic macromolecular interaction in CS-rich microzones, water-rich microzones, and equilibrium phase where homogeneous CS solution contacted OH. It was concluded that the formation of an oriented microstructure required sufficient entanglement of macromolecular chains and a proper diffusion rate of OH. CS hydrogels synthesized by this method facilitated the fabrication of hydrogel materials with enhanced mechanical performance and modulated molecular transport for potential applications in cellular colonization and migration.

Fig. 7: Dynamic gelation process and oriented microstructure of chitosan hydrogels.
figure 7

a Schematic illustration of the layerwise, oriented microstructure of CS hydrogels (top) and formation mechanisms of different gelation regimes (bottom). Reproduced with permission43. Copyright 2015, Springer Nature. b Scheme of the hierarchically oriented structure of the CS hydrogel and the corresponding CLSM images. Reproduced with permission44. Copyright 2017, American Chemical Society. c Observation of the time-dependent gelation process of CS hydrogels via acidic and alkaline systems. d Schematic illustrating the gelation process and structural evolution of CS hydrogel via alkaline and acidic solvents. c, d Reproduced with permission46. Copyright 2016, Springer Nature.

The gelation process of chitosan in LiOH-urea solution was entirely visualized by fluorescence imaging of tetraphenylethene moieties attached to the hydrogel chains. In situ visualization of the fluorescent patterns of hydrogel networks by CLSM demonstrated that the gelation process could be divided into two stages: a thermal gelation stage and a rinse stage. Accompanied by other pseudo-in-situ investigations, it was confirmed that the dynamic variations in hydrogen bonding between hydroxide ions, urea, and chitosan dominated the development of junction points and the formation of crystals. This work highlighted the possibility of visualizing different gelation systems by fluorescence imaging to better understand the gelation process45. In situ confocal imaging was further applied to investigate the different gelation processes of CS hydrogels via acidic and alkaline solvent systems. Real-time confocal imaging showed that the roughness in acidic systems increased with increasing gelation time, demonstrating that the gelation mechanism was deprotonation and entanglement of CS macromolecules into fibrous structures. In comparison, the alkaline system evolved integrally by intermolecular hydrogen bonding during a gelation process composed of a thermal gelation stage and a rinse stage (Fig. 7c). The significant difference between gelation mechanisms of acidic and alkaline systems led to CS hydrogels with different hierarchical structures. CLSM micrographs indicated that the acidic system had an oriented fibrous hydrogel structure with compact voids, while the alkaline system had a homogeneous network structure at the nanoscale (Fig. 7d). Such homogeneous, oriented, and fibrous 3D hydrogel networks of alkaline systems possessed a uniform distribution of strain loading and reduced structural defects, showing great improvements in hardness, strength, and toughness46. Fluorescence imaging was also used to study the gelation process of inorganic hydrogel composites by employing the bicontinuous self-assembly of mixed laponite and montmorillonite dispersions. In situ imaging of gelation kinetics by CLSM showed the evolution of a 3D microporous architecture with increased gelation time and ultimately an interconnected network. The fluorescence location of two platelets labeled with different dyes combined with TEM and rheology results synergistically verified that the microstructure of the hydrogel network consisted of overlapping coins or house-of-card configurations (larger montmorillonite platelets form the network surrounded by small laponite platelets). Additionally, a higher mixing ratio of laponite to montmorillonite increased the pore size and therefore enhanced the strength of the composite network. CLSM micrographs showed that the rupture of the network at the transition temperature was ascribed to the collapse at the microscale induced by weakened interaction within local gel domains. Such unique and tunable properties were envisioned for specific applications, such as lithium battery design, nuclear waste management, and flame-retardant materials47. With the instrumental development of confocal systems, a multimodal approach based on the integration of CLSM, confocal reflectance microscopy (CRM), and confocal rheology was established to investigate the fibrillogenesis of type I collagen during the sol-gel transition. Simultaneous fluorescence imaging and rheological measurements over the course of fibrillogenesis allowed synergistic analysis of the structural evolution and viscoelastic variations. A comparison of microscopic and rheological data as well as further quantitative analysis verified the presence of a so-called system-spanning structure, which was inconsistent with the predictions of percolation theory. Despite such notable discrepancies, the utility of multimodal measurements for quantitative analysis of evolving structural and viscoelastic properties of hydrogel networks could serve as critical test beds to control properties of self-assembling systems48.

Phase transition of supramolecular hydrogels

Fluorescence microscopic imaging has also been applied to study the important sol-gel/gel-sol transitions of synthesized supramolecular hydrogels. Direct 3D visualization of hydrogel networks by CLSM showed a significant structural difference between the sol state and gel state. Interestingly, an indirect measurement method was proposed to estimate the mesh size of hydrogel networks by observing the Brownian motion of fluorescent nanobeads with different diameters in the matrix (Fig. 8a). This method was further applied to study the bacterial and enzymatic movement controlled by photoresponsive supramolecular nanomeshes49. From the above results, a fine-tuned release strategy was established based on the multiple response (temperature, pH, Ca2+, and light)-triggered sol-gel transition of single-component supramolecular hydrogels. Detailed dynamic structural changes during the gel transition were visualized by preferential staining of the hydrophobic domains of hydrogel fibers. Fluctuation of short fibers in the sol state and fixation of long fibers in the gel state were observed by merging images recorded at different times. Real-time imaging showed a dynamic fusion of short fibers into long fibers during the sol-gel transition, leading to the formation of more crosslinking points (Fig. 8b). These conclusions demonstrated the holding and releasing ability of the designed supramolecular hydrogel, and therefore, four types of logic-gate functions (AND, OR, NAND, and NOR) were constructed by combining the different responsivenesses. Implementation of logic-gate functions into intelligent supramolecular hydrogels highlighted the potential applications in multiresponsive drug delivery and release systems50.

Fig. 8: Quantification of supramolecular nanofibers in the hydrogel networks.
figure 8

a Time-dependent CLSM images for the analysis of Brownian motion of microbeads with different diameters. Reproduced with permission49. Copyright 2008, Wiley-VCH. b CLSM images with corresponding histograms of fiber length distribution and number of crosslinking points in the sol state in the absence of Ca2+ or in the gel state in the presence of Ca2+. Reproduced with permission50. Copyright 2009, American Chemical Society.

In situ fabrication of supramolecular hydrogel nanofibers at the oil/water interface was accomplished by self-assembly of a Schiff base hydrogelator synthesized from water-soluble and hydrophobic precursors. Emulsion droplets stabilized by hydrogel nanofibers showed a gel-sol transition in response to elevated temperature and increased acidity. By staining the hydrophobic domains of nanofibers and the oil phase with selected fluorophores, the stable structure of emulsion droplets coated by nanofibers could be imaged by CLSM. The dynamic fusion process of emulsion droplets triggered by external stimuli was visualized by real-time colocalization of droplets labeled by different colored fluorophores (Fig. 9a). Based on these observations, stimuli-triggered disassembly of the interfacial nanofibers was utilized to control a synthetic Cu-free click reaction confined in emulsion microreactors51. A new preparation method for producing homogeneous and reproducible supramolecular hydrogels was proposed based on the uniform pH change controlled by hydrolysis of glucono-δ-lactone (GdL). The slow GdL hydrolysis resulted in homogeneous hydrogel networks composed of fluorenylmethoxycarbonyl (Fmoc) dipeptides regardless of shear or mixing history, allowing the gelation mechanism to be monitored. In situ and real-time confocal imaging of the gelation process showed that Fmoc-dipeptides quickly started to aggregate into fibrillar structures, demonstrating that initial self-assembly was driven by π–π stacking (Fig. 9b). In comparison, inhomogeneous hydrogels with visibly suspended regions were achieved by pH adjustment using HCl because the gelation kinetics were of the same order or faster than the mixing kinetics. This synthetic method offered the potential to prepare supramolecular hydrogels with uniform and consistent initial states for sample comparison in different systems52. Catalytic control over gelation time and stiffness of a low-molecular-weight hydrogel formed by a hydrazone-based hydrogelator was studied by a detailed protocol. After incorporation of fluorescein-derived fluorophores functionalized with aldehydes into the fiber formation process, the final morphology of the hydrogel network was visualized by CLSM. Fluorescence micrographs showed acidic catalysis at pH 5.0, and nucleophilic catalysis with aniline led to dense networks with thin highly branched fibers, while the uncatalyzed sample had a poorly connected network with apparently bundled fibers at pH 7 (Fig. 9c). These microscopic observations matched well with the macroscopic mechanical results measured by rheology53. Functionalized supramolecular hydrogel networks encapsulating microemulsions were studied by fluorescence imaging to screen the real-time, dynamic changes in emulsion shapes. A novel drug delivery platform with a tunable postproduction release rate was constructed by self-assembly of a supramolecular hydrogel with three components. In this system, a hydrogel network was assembled by a fluorophore-conjugated hydrogelator to encapsulate thermoresponsive liposomes containing a proteolytic enzyme. Multicolor fluorescence imaging of the three components showed that neither hydrogel fibers nor trapped enzymes interfered with the giant multilamellar liposomes, indicating orthogonal self-assembly (Fig. 9d). A linear relationship between the concentration of proteolytic enzyme and the hydrolysis degree of the fluorophore-conjugated hydrogelator was validated by fluorescence microscopy. Thus, the postproduction release rate of the system could be tuned by the heating time at constant temperature, facilitating applications for personalized drug release54.

Fig. 9: Phase transition of supramolecular hydrogels visualized by CLSM.
figure 9

a Time-dependent CLSM images of the acid-induced fusion of nanofiber-stabilized toluene droplets. Reproduced with permission51. Copyright 2017, Wiley-VCH. b Time-dependent CLSM images showing the in situ evolution of fibers in the Fmoc-leucine–glycine system. Reproduced with permission52. Copyright 2009, Royal Society of Chemistry. c Scheme of the catalytic control over hydrogelator self-assembly and influence of catalysis on the hydrogel microstructure. Reproduced with permission53. Copyright 2014, Springer Nature. d Multicolor confocal micrographs of the three components (gelator, fluorescein; lipid, nitrobenzoxadiazole (NBD); enzyme, rhodamine) orthogonally self-assembled in a gel matrix. Reproduced with permission54. Copyright 2012, American Chemical Society.

Self-sorting events of supramolecular hydrogels

To mimic living cells containing well-organized and stimuli-responsive systems with sophisticated functions, a multicomponent supramolecular hydrogel consisting of a peptide hydrogelator and an amphiphilic phosphate was designed and synthesized. Self-sorting events of supramolecular hydrogel nanofibers were comprehensively studied by in situ and real-time imaging with CLSM and STED. Selective labeling of a synthetic hydrogelator pair (peptide-type BPmocF3 and lipid-type Phos-cycC6) with appropriate fluorophores enabled the direct visualization of orthogonal self-assembly in the hydrogel network (Fig. 10a). In situ time-lapse imaging demonstrated that the two hydrogelators behaved independently with different growth rates during the formation process. The high self-sorting degree quantitively evaluated by Pearson’s correlation coefficients indicated the negligible correlation between individual fibers, implying a highly orthogonal network. Stochastic nonsynchronous fiber formation visualized during the seed experiment indicated that the fiber growth rate was determined by the nucleation process, suggesting a cooperative mechanism. These findings demonstrated the significantly different driving forces of BPmocF3 (π–interactions and hydrogen bonding) and Phos-cycC6 (van der Waals interactions and hydrogen bonding) for self-sorting formation rather than coassembly55. Using the same synthetic hydrogelator pair, fluorescence imaging of the orthogonal coassembly illustrated that the self-sorting phenomena were controlled by two crucial factors: (i) the surface charge of the hydrogelators and (ii) hydrophobicity of the side chain on the peptide-type hydrogelators. The same net/surface charge of the hydrogelator pair and less hydrophobic side chains of peptide-type hydrogelators contributed to the formation of self-sorting nanofibers. Based on these findings, an orthogonal hydrogel network composed of three distinct sets of nanofibers (peptide-type hydrogelator, lipid-type hydrogelator, and cationic organorhodium complex) was first fabricated and visualized (Fig. 10b)56. These observations of orthogonal hydrogel networks and self-sorting formation dynamics promoted the development of multicomponent soft materials with programmed functions for wider applications in intelligent biomimetics, optoelectronic devices, and biomedical treatment.

Fig. 10: Self-sorted double networks of supramolecular hydrogel nanofibers.
figure 10

a CLSM, STED, and 3D reconstruction images of self-sorted supramolecular nanofibers. Reproduced with permission55. Copyright 2016, Springer Nature. b Schematic illustration of the two-step synthesis protocol of orthogonal networks comprising three components with corresponding CLSM images. Reproduced with permission56. Copyright 2018, American Chemical Society. c Schematic representation of the multicomponent hydrogels prepared by PAF with corresponding optical and CLSM images. Reproduced with permission57. Copyright 2019, American Chemical Society.

Based on the self-sorting double network (SDN) formed by Phos-cycC6 and BPmocF3, a multiresponsive system was designed for controlled protein release. Orthogonal SDN was fabricated by sequential addition of sarcosine oxidase (SOx) and Ca2+ ions into the gelator pair via a postassembly fabrication (PAF) protocol (Fig. 10c). In comparison, fluorescence imaging showed that only an inhomogeneous suspension containing precipitates was obtained by a one-step mixing protocol. Fluorescence recovery after photobleaching (FRAP) analysis of time-course CLSM images indicated that the fluidity of Phos-cycC6 nanofibers was suppressed by Ca2+ ions owing to coordination bonding. The addition of adenosine triphosphate could break the coordination bonds due to a stronger affinity and thus cause the gel-sol transition of the Phos-cycC6/Ca2+ fibers. Moreover, the addition of sarcosine induced the gel-sol transition of BPmocF3/SOx nanofibers by oxidation of BPmocF3. An AND logic-gate fashion for antibody release was established based on the gel-sol transition of the multicomponent hydrogel in response to ATP and sarcosine57. Another SDN supramolecular hydrogel was developed by the combination of peptide-type (NPmoc-F(4-F)F, derived from BPmocF3) and lipid-type (Phos-cycC6) hydrogelators, showing orthogonal responses to independent stimuli. High orthogonality of the SDN was confirmed by the abovementioned Pearson’s correlation coefficients of the CLSM images of hydrogelators stained by synthetic fluorophores. Investigation of the stimuli response demonstrated that the NPmoc moiety of NPmoc-F(4-F)F could be eliminated by appropriate reducing reagents to induce gel-sol transition. Moreover, hydrolysis of Phos-cycC6 could be catalyzed by bacterial alkaline phosphatase (BAP) to induce gelation. Dynamic changes in the network mesh size were visualized by imaging the Brownian motions of encapsulated fluorescent nanobeads with different diameters (Fig. 11a–c). Therefore, the smaller mesh size obtained by BAP treatment indicated a denser crosslinked network facilitated by gelation of Phos-cycC6. The bidirectional rheological response of the two-component hydrogel was applied to control protein release by external stimuli. Furthermore, controllable encapsulation of nanobeads by this SDN hydrogel was realized by discriminating the order of the stimuli applied under certain conditions58. The mechanisms of self-sorting events were also studied by visualizing the orthogonal self-assembly of low-molecular-weight hydrogelators and phospholipids. Rapid identification by multiple methods demonstrated that the formation of an orthogonally self-assembled network can take place via strong and distinct sets of interactions. By preventing the occurrence of fusogenic contact, liposomes coexisted with fibrillar hydrogel networks to provide compartmentalization and enhanced stability (Fig. 11d). Such compartmentalization was clearly imaged by the differential fluorescence lifetimes between the fluorophores incorporated in liposomes and gel fibers by fluorescence lifetime imaging microscopy (Fig. 11e). It was foreseen that more complex self-assembled architectures could be built by compartmentalizing other molecular components, such as proteins, polymersomes, viral capsids, and nanoparticle assemblies59.

Fig. 11: Measurement of the network mesh size and visualization of the compartmentalized architecture.
figure 11

a Confocal imaging of Brownian motions of beads in solution and hydrogel matrix after addition of BAP. The right, middle, and left micrographs show nanofibers, fluorescent beads, and merged images, respectively. b Red (left) and green (middle) CLSM images show the positions of the fluorescence beads at 0 and 5 min, while the yellow points in merged images represent the immobile beads. The numbers indicate the self-sorting degree quantified via Pearson’s correlation coefficient (r). c Brownian motions of beads with different diameters in solution and hydrogel matrix. ac Reproduced with permission58. Copyright 2018, Springer Nature. d Schematic illustration of the incorporation of fluorophores in liposomes and self-assembled fibers. e Compartmentalized architecture visualized by fluorescence lifetime imaging microscopy based on lifetime discrepancies. d, e Reproduced with permission59. Copyright 2016, Royal Society of Chemistry.

Hydrogel mechanics

The mechanical properties of hydrogel materials are greatly hampered by their intrinsic fragility and softness stemming from the low density of polymer chains in the swollen state. Conventional techniques were adapted to investigate the fracture surface of hydrogels but were still severely limited by time-consuming and postmortem disadvantages. Therefore, a series of characterization strategies based on fluorescence imaging have emerged in the past few years. These fluorescence imaging strategies are divided into three types based on the staining methods: poststaining after force loading, incorporation of fluorophores in pretreatment, and induction of turn-on fluorescence.


Poststaining methods customarily involve the external force-induced exposure of active moieties and subsequent treatment with functionalized fluorophores. Recently, a disulfide-linked hydrogel was fabricated to visualize the bond rupture induced by compression, which was motivated by the remodeling behaviors of natural hydrogels in organisms. Fluorescence labeling of thiols formed by mechanical force-driven rupture of disulfide bonds was accomplished by Michael addition of maleimide modified with fluorescein (Fig. 12a). The percentages of compressive strain were directly interpreted by the fluorescence intensity of the labeled hydrogels. Using a structured polydimethylsiloxane (PDMS) mold prepared by photolithography, specific fluorescent patterns on the hydrogel surface could be obtained by compression (Fig. 12b). One potential application of this technique was to decorate hydrogel surfaces with protein ligands for confinement of cells in patterned domains60. For desirable applications in artificial tissues and soft devices, muscle-like PVA hydrogels were mechanically trained to obtain a high water content, high fatigue resistance, high strength, and superior compliance (Fig. 12c). The oriented alignment of nanofibrils obtained by mechanical training was directly visualized by confocal imaging of conjugated fluorophores by poststaining. Visualization of the fracturing process revealed that the fatigue resistance of the hydrogels originated from crack pinning by the orientation of nanofibrils, which required much higher energy to fracture than amorphous polymer chains (Fig. 12d). These strong, soft, and fatigue-resistant hydrogels were applied to fabricate mechanically enhanced the microstructures through 3D printing followed by mechanical training61.

Fig. 12: Fluorescence microscopic imaging of hydrogel mechanics by poststaining.
figure 12

a Top: schematic of disulfide bond rupture by compression and subsequent fluorescence labeling via Michael addition. Bottom: CLSM images of disulfide hydrogels exposed to different compressive strains. b Schematic illustrating the surface patterning process of different fluorophores on disulfide hydrogels via compression. Representative CLSM images of disulfide hydrogels patterned with (top) fluorescein-5-maleimide and (bottom) acrylate fibrinogen fluorescein with or without force. Reproduced with permission60. Copyright 2016, Royal Society of Chemistry. c Schematic showing the design of muscle-like hydrogels. Top: Microstructural transition of a PVA hydrogel from random orientation to alignment via mechanical training. Bottom left: similarity between the oriented fibrillar architecture of human skeletal muscle and aligned nanofibrils of muscle-like hydrogel. Bottom right: comparison of mechanical properties between human skeletal muscle and muscle-like hydrogel. d Schematic illustrating the nanofibril microstructure of notched prestretched and freeze–thawed PVA hydrogels around the fatigue cracks with corresponding CLSM images. Reproduced with permission61. Copyright 2019, National Academy of Sciences.

Incorporation of fluorophores

The poststaining method was incapable of in situ and real-time visualization, hence, strategies employing FRET pairs as indicators and mechanofluorophores as crosslinkers were proposed. Based on the thiol-Michael-type addition reaction, mechanoresponsive hydrogel particles were synthesized by droplet microfluidics. In this strategy, a FRET pair composed of fluorophores modified with a maleimide moiety was fixed to the backbone of thiol-functionalized PEG. The external compression force induced a closer distance between the donor and acceptor, resulting in a fluorescence shift. On this basis, global network deformations were presented by CLSM images in true colors, and further localized deformations on the hydrogel particle surface were determined by combination with atomic force microscopy (AFM). This easy-to-read-out mechanosensitive matrix based on hydrogel particles was anticipated to probe transient forces and stress distribution in a dynamic cell environment62. Using the same FRET-sensing mechanism, a mechanochromic protein-hydrogel hybrid was designed for visualization of mechanical strain. In this synthetic hydrogel hybrid, fibronectin labeled with a FRET pair was terminally functionalized with an azide moiety and then conjugated to the PNIPAM network through a strain-promoted azide–alkyne cycloaddition reaction. Droplets containing hydrogel precursors were spotted onto unstretched PDMS sheets and then polymerized for strain measurements. Pixel-by-pixel analysis of the CLSM images showed a significant decrease in the FRET ratio in hydrogel droplets during stretching of the PDMS sheet. These data validated that macroscopic deformation of the hydrogel droplet resulted in molecular conformation changes of the FRET pair interconnected to the hydrogel network. This synthetic hydrogel was envisioned to become a mechanosensor of biomolecules, cells, and tissues in bioengineering and mechanobiology63. Programmable mechanofluorescent DNA hydrogels were fabricated by incorporation of FRET-based and tunable DNA tension probes into a 3D all-DNA hydrogel matrix. These mechanochromic DNA probes based on FRET pairs were synthesized by facile hybridization-driven functionalization. By breaking the sacrificial duplex of the DNA probes maintained in close proximity, fluorescence readouts were obtained to evaluate the reversible and irreversible strains (Fig. 13a). This modular hydrogel mechanosensor was applied to the microscopic 3D strain mapping of subtle mechanical behaviors by CLSM (Fig. 13b). For example, microstructural failure mechanisms of hydrogel composites and stress distribution of ice-templated growth were visualized by 3D fluorescence imaging64.

Fig. 13: Fluorescence microscopic visualization of hydrogel mechanics by incorporation of fluorophores and induction of turn-on fluorescence.
figure 13

a Schematic illustrating the preparation and operational principle of modular mechanofluorescent DNA hydrogels based on the FRET mechanism. b Applications of fluorescent mechanosensing for visualizing complex strain-field inhomogeneities. a, b Reproduced with permission64. Copyright 2019, Springer Nature. c Schematic showing the synthesis procedure of a multiresponsive hydrogel via micellar copolymerization. Microstructural changes in the hydrogel could be induced by different stimuli (force, UV light, and heat) and recovered by visible light. d CLSM images showing the fluorescence responses of hydrogel to compression. c, d Reproduced with permission65. Copyright 2017, Wiley-VCH. e Sensing mechanism of the spatial distribution of stress, strain, and energy dissipation with confocal imaging around the crack tip. Reproduced with permission67. Copyright 2020, American Chemical Society.

Induction of turn-on fluorescence

A multiresponsive fluorophore such as spiropyran (SP) changes its color and fluorescence by light, heat, and force stimuli through a reversible structural transformation from SP to merocyanine (MC), which can be recovered by irradiation with visible light. Taking advantage of SP, a micelle-assisted copolymerization method was reported to fabricate thermoresponsive, photoresponsive, and mechanoresponsive hydrogels (Fig. 13c). External stimuli-induced color and fluorescence changes of SP allowed a visible indication of local network deformation. In particular, the high fluorescence contrast generated from the SP-MC transition could be further applied to investigate microscale deformation by in situ confocal imaging (Fig. 13d). These unique optical properties of multistimuli-responsive hydrogels showed great potential for sensing, imaging, and display applications65. Another recent work reported the usage of Diels-Alder adducts of π-extended anthracenes as mechanofluorophore crosslinkers of PNIPAM hydrogel networks. Scission of covalent bonds was directly imaged with CLSM and quantified by fluorescence intensity correlating to macroscopic fracture mechanics and the elasticity tested by uniaxial compression. It was elucidated that the dissolution of hydrogen bonds in the hydrogel network at a high water content weakened the stress distribution, leading to reduced mechanical performance and higher crack incidence66. Although covalent bond scission was visualized and quantified by incorporation of mechanophores into the hydrogel networks, there were several limitations (e.g., incorporation-induced structural changes, hydrophobicity of mechanophores, formation of weaker scissile bonding, and high cost of synthesis) of this technique to be overcome. Thus, a mechanoradical polymerization technique was designed to visualize and quantify polymer strand scission in the damage zone of double-network hydrogels (Fig. 13e). The second network in this strategy was formed by polymerization of NIPAM initiated by mechanoradicals generated from covalent bond scission. Upon heating above the lowest critical solution temperature (LCST) of PNIPAM, fluorophores trapped in the hydrophobic domains of PNIPAM could visualize the spatial distribution of stress, strain, and energy dissipation around the crack tip. Quantitative estimation of the mechanical energy density in the damage zone was achieved by fluorescence intensity mapping or line profile analysis calibrated with tensile testing67.

Elasticity measurement by fluorescence imaging

During the past two decades, researchers have performed a large number of studies on the interfacial adhesion between cells and extracellular matrices (ECMs). Although the elastic substrate method can quantitively report the direction, location, and magnitude of these interfacial stresses, measurement of mammalian cell movement is difficult because of the mismatch between the mechanical properties of elastomers and mobility rates of mammalian cells. Therefore, PAM substrates were adopted as substitutions since their stiffness could be readily regulated by different concentrations of monomers and crosslinkers. However, it is inappropriate to measure the elasticity of PAM substrates by macroscopic stretch tests because of their microscale thickness. Therefore, earlier microscopic measurements based on fluorescence imaging emerged. Fluorescent latex marker beads were embedded throughout the PAM substrate to determine the z-position of the hydrogel surface. The PAM substrate was sandwiched between glass surfaces and then compressed by small metal weights. The obtained change in thickness along with the known compressing force was used to calculate the elasticity of the PAM substrate68. Another measuring strategy of hydrogel ECM elasticity was proposed based on indentation of the substrates and fluorescence imaging of the resulting deformation. In this strategy, a steel sphere of known density and radius was deposited onto the hydrogel substrate to generate surface deformation and then removed by a magnet. The indentation depth was determined by the change in vertical position of fluorescent markers embedded in the hydrogel matrix. The hydrogel elasticity calculated by the Hertzian pressure method was more accurate for compliant gels but less accurate for stiff gels69. To avoid possible damage during removal of the indentor, an improved method was reported by determining the z-positions of the diameter of the sphere (Fig. 14a). More importantly, a wider range of accuracy of this method was acquired by matching the elasticity of the hydrogel substrate with the density of the appropriate indentor. The calculated elasticity values were in order-of-magnitude agreement with AFM measurements, indicating the potential for quality control during fabrication of many hydrogel ECMs70.

Fig. 14: Microscopic indentation measurement of hydrogel elasticity.
figure 14

a Schematic showing the indentation measurement by epifluorescence microscopy. Reproduced with permission70. Copyright 2009, American Institute of Physics. b Schematic of the indentation test based on confocal imaging. Reproduced with permission72. Copyright 2015, American Chemical Society.

Although the Hertz contact model was adopted throughout the development of microscopic indentation methods, the limitations of this model were usually overlooked to overestimate the elasticity of substrates. In Hertz contact theory, the substrate is assumed to be a linear elastic half-space with an infinite depth, whereas in fact, the thickness of the substrate is comparable to the contact radius or indentor radius. Therefore, the nonlinearity of the hydrogel substrate and large deformation were taken into consideration, and the Hertz contact model was modified by a correction factor using a finite-element method71. Another major deviation of the above methods originated from indentation depth measurement because the fluorescent beads on the contact plane need to be identified with human eyes. Recent work reported a solution to this problem using CLSM since the z-position of each image slice was recorded during 3D imaging. 3D reconstruction images provided information on the indented profile and contact radius for selection of the appropriate contact mechanics models (Fig. 14b). Benefiting from the development of an automatic measuring procedure, the measurement of indentation depth could be user-independent to eliminate individual error. Additionally, high-throughput multipoint indentation could be facilitated if a detecting array was established72.

Conclusions and future perspectives

The past few decades have witnessed the phenomenal advancements of fluorescence microscopy and its broad applications in material science. In this review, we provide a brief summary of the recent advances in the visualization of functionalized hydrogels by fluorescence microscopy (Table 2). These intriguing examples are anticipated to shed light on the concepts, mechanisms, and applications of fluorescence visualization strategies for functionalized hydrogels. To tackle the potential challenges of this subject, current limitations, possible solutions, and future perspectives should be taken into careful consideration.

Table 2 List of the microscopic visualization strategies of functionalized hydrogels.

As summarized in the above discussion, researchers focused most attention on the visualization of intrinsic hydrogel systems but neglected the importance of hydrogel composite systems. Structural visualization and applications of organic–organic hydrogel composites consisting of interpenetrated or semi-interpenetrated networks have already been discussed in detail17,18,20,21,22. Future research should be focused on organic–inorganic hydrogel composites because of their enhanced optical and mechanical properties, among others. In recent years, the modification of inorganic fillers, such as graphene, nanoclays, and layered double hydroxides with fluorophores, has been widely reported. Hence, the spatial distribution, anisotropic arrangement, and interfacial interaction of inorganic fillers within hydrogel composites are expected to be visualized to improve their chemical, physical, and biological performance.

Quantification of matter transport is an important issue in practical applications (e.g., drug release, pollutant removal, and substance separation) of functionalized hydrogels. However, only a few groups have tried to visualize the Brownian motion of fluorescent nanobeads49,58 within hydrogel networks or utilize FRAP22,57 to analyze the fluidity of hydrogel nanofibers. The reason is that researchers have paid attention to qualitative visualization rather than further quantification analysis. In fact, there are a variety of quantification methods based on fluorescence microscopic imaging73, such as FRAP, inverse FRAP, fluorescence loss in photobleaching, fluorescence localization after photobleaching, and fluorescence correlation spectroscopy74. Rational utilization of these methods under appropriate circumstances could deepen the comprehension of the visualized transport process to promote the efficiency and performance of functionalized hydrogels.

It is worth noting that the most prevailing microscopic technique for visualizing functionalized hydrogels is currently CLSM. Thus, wider applications of super-resolution techniques remain to be exploited and developed for the observation of hydrogel microstructures at higher resolution. The high cost of complex instruments and lack of appropriate fluorescent markers are considered major obstacles. The rapid development and growing popularization of various super-resolution microscopies, such as STED9, STORM10, photoactivated localization microscopy75, and structured illumination microscopy76, represent possible solutions to the former problem. The latter problem could be solved by the design and synthesis of ultrastable fluorophores, such as quantum dots, metal nanoclusters, and carbonaceous nanoparticles.

Among all the abovementioned examples, only a few studies have reported the coupling of CLSM with CRM, AFM, and confocal rheology. Therefore, coupling techniques based on fluorescence microscopy and other characterization methods need further development. The greatest challenge is the integration of confocal imaging systems with other detection, measurement, and visualization systems. To overcome this difficulty, developers from different disciplines, such as optics, mechanics, and electronics, must work together to design and build advanced instruments. One successful example is correlative light and electron microscopy77 combining fluorescence microscopy and electron microscopy, which is capable of providing positional information and visualizing refined microstructures simultaneously.

Overall, this review may offer viable opportunities and inspiration for material researchers to design new strategies for studying functionalized hydrogels. Additionally, we predict that the unprecedented progress of fluorescence microscopy techniques will contribute to a fundamental revolution for characterizing not only functionalized hydrogels but also various polymeric materials in the near future.


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This research was supported by the National Key R&D Program of China (2017YFA0207800), the National Natural Science Funds for Distinguished Young Scholar (21725401), the National Natural Science Foundation (22161142021), the 111 projects (B14009), and the Fundamental Research Funds for the Central Universities.

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Zhong, J., Zhao, T. & Liu, M. Fluorescence microscopic visualization of functionalized hydrogels. NPG Asia Mater 14, 38 (2022).

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