Nintedanib decreases muscle fibrosis and improves muscle function in a murine model of dystrophinopathy

Piñol-Jurado, Patricia; Suárez-Calvet, Xavier; Fernández-Simón, Esther; Gallardo, Eduard; de la Oliva, Natalia; Martínez-Muriana, Anna; Gómez-Gálvez, Pedro; Escudero, Luis M.; Pérez-Peiró, María; Wollin, Lutz; de Luna, Noemi; Navarro, Xavier; Illa, Isabel; Díaz-Manera, Jordi

doi:10.1038/s41419-018-0792-6

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Published: 10 July 2018

Nintedanib decreases muscle fibrosis and improves muscle function in a murine model of dystrophinopathy

Patricia Piñol-Jurado¹^na1,
Xavier Suárez-Calvet ORCID: orcid.org/0000-0002-5314-6607^1,2^na1,
Esther Fernández-Simón¹,
Eduard Gallardo^1,2,
Natalia de la Oliva^3,4,
Anna Martínez-Muriana^3,4,
Pedro Gómez-Gálvez⁵,
Luis M. Escudero⁵,
María Pérez-Peiró¹,
Lutz Wollin⁶,
Noemi de Luna^1,2,
Xavier Navarro ORCID: orcid.org/0000-0001-9849-902X^3,4,
Isabel Illa^1,2 &
…
Jordi Díaz-Manera^1,2

Cell Death & Disease volume 9, Article number: 776 (2018) Cite this article

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Abstract

Duchenne muscle dystrophy (DMD) is a genetic disorder characterized by progressive skeletal muscle weakness. Dystrophin deficiency induces instability of the sarcolemma during muscle contraction that leads to muscle necrosis and replacement of muscle by fibro-adipose tissue. Several therapies have been developed to counteract the fibrotic process. We report the effects of nintedanib, a tyrosine kinase inhibitor, in the mdx murine model of DMD. Nintedanib reduced proliferation and migration of human fibroblasts in vitro and decreased the expression of fibrotic genes such as COL1A1, COL3A1, FN1, TGFB1, and PDGFA. We treated seven mdx mice with 60 mg/kg/day nintedanib for 1 month. Electrophysiological studies showed an increase in the amplitude of the motor action potentials and an improvement of the morphology of motor unit potentials in the animals treated. Histological studies demonstrated a significant reduction of the fibrotic areas present in the skeletal muscles. Analysis of mRNA expression from muscles of treated mice showed a reduction in Col1a1, Col3a1, Tgfb1, and Pdgfa. Western blot showed a reduction in the expression of collagen I in skeletal muscles. In conclusion, nintedanib reduced the fibrotic process in a murine model of dystrophinopathy after 1 month of treatment, suggesting its potential use as a therapeutic drug in DMD patients.

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Introduction

Duchenne muscle dystrophy (DMD) is a genetic disorder produced by mutations in the dystrophin gene. DMD patients develop muscle weakness that usually starts at an age of 5–7 years and progresses quickly. At 14 years of age, most of the patients have lost ambulation. At 20 years, patients are completely dependent on care givers or relatives owing to severe muscle weakness. Respiratory muscle failure and/or myocardiopathy are the main causes of mortality in these patients^1,2.

Several therapeutic strategies have been tested in murine models of DMD, and some of them have also been studied in clinical trials in patients³. Cell therapy using different stem cells, such as myoblasts or mesoangioblasts, have been tested both in animals and in patients⁴. Although results of animal experiments have shown promising results, tests in humans have not lead to any functional change in the patients treated^5,6. Gene-based strategies, such as exon-skipping or readthrough of null mutations have demonstrated to restore the expression of dystrophin in muscles fibers both in mice and in patients^7,8. Ataluren is at present commercialized in Europe to treat patients with non-sense mutations, and eteplirsen is being commercialized in USA to treat DMD patients with skipping of the exon 51^9,10. CRISPR-Cas9 is a promising genetic strategy, that could be useful in patients although it has only been tested in animal models and cell cultures so far^11,12. Drugs interfering the process of muscle degeneration are another potential strategy to treat muscle dystrophies. The process of muscle degeneration in DMD patients has been thoroughly studied. The absence of dystrophin weakens muscle membrane, leading to contraction-induced muscle fiber damage and death¹³. Muscle fiber loss is associated to expansion of fibro-adipose tissue producing muscle weakness¹⁴. Several cytokines and growth factors have been related to skeletal muscle fibrosis, although it has been reported that transforming growth factor β (TGF-β) is the most important factor in this process^15,16,17. Several therapeutic strategies trying to decrease TGF-β activity have been developed, which have been shown to reduce fibrous tissue but also to increase inflammatory infiltration^18,19. These results have promoted the investigation of other growth factors involved in muscle fibrosis.

Platelet-derived growth factors (PDGFs) are associated with multiple cellular processes such as proliferation, migration, and cell differentiation²⁰. PDGF have been implicated in a broad range of diseases such as cancer, atherosclerosis and fibrosis. Several evidences supporting a role on muscle fibrosis of PDGF-AA have been published justifying therapeutic interventions targeting the PDGF signaling cascade^21,22. Nintedanib is a tyrosine kinase inhibitor (TKI) also targeting fibroblast growth factor receptor (FGFR) 1 and 2, PDGF receptors α and β and vascular endothelial growth factor receptor (VEGFR)²³. Nintedanib is approved for the treatment of patients with idiopathic pulmonary fibrosis (IPF), a condition in which expansion of the fibrotic tissue is crucial^24,25. The anti-fibrotic activity of nintedanib has been confirmed in primary lung fibroblasts from patients with IPF and in dermal fibroblasts from patients with systemic sclerosis^25,26.

In this study, we explored the effect of nintedanib on human fibroblasts obtained from muscle biopsies and on muscle fibrosis and function in the mdx mouse model of DMD.

Results

Nintedanib reduced proliferation, migration, and mRNA expression of fibrotic markers in human fibroblasts

In muscle dystrophies, activated fibroblasts proliferate and express high levels of extracellular proteins leading to the expansion of fibrotic tissue^27,28. We analyzed whether nintedanib was able to decrease fibroblast proliferation in vitro. Nintedanib significantly reduced fibroblast proliferation in a dose-dependent manner reaching the highest effect using a concentration of 0.4 μM (Fig. 1a) without any cytotoxic effect measured by cell viability and apoptosis assays (Fig. S1A, B). Accordingly, the expression of the gene PT53 (tumor protein p53) and the number of Ki-67+ cells, which are well known cell cycle markers, were significantly lower in nintedanib-treated cells than in control non-treated cells (Fig. S1C, D). To study which growth factor signaling cascade targeted by nintedanib affects more prominently fibroblasts proliferation, we cultured human fibroblasts in the presence of recombinant PDGF-AA, recombinant human basic fibroblast growth factor (bFGF), or recombinant human vascular endothelial growth factor (VEGF)-A, with or without nintedanib (Fig. 1b–d). In order to avoid possible interferences with other growth factors present in the fetal bovine serum (FBS), we cultured the cells with 1% FBS only. PDGF-AA significantly increased fibroblast proliferation at days 2, 4, and 6 (Fig. 1b) but not bFGF or VEGF (Fig. 1c, d). This increase was completely blocked by the addition of nintedanib at 0.4 μM (Fig. 1b).

**Fig. 1: Effect of nintedanib on fibroblasts from healthy human muscle in vitro.**

After muscle damage, activated fibroblasts gain migratory capabilities that allow them to move to the site of injury^29,30. Using a scratch assay, we observed that nintedanib blocked cell migration promoted by PDGF-AA, bFGF, VEGF, and collagen tissue growth factor (CTGF) (Fig. 1e). The highest effect of nintedanib on cell migration was observed when PDGF-AA was added to the culture (Fig. 1e, f) and it was dose dependent (Fig. S2A, B). Transwell experiments confirmed these results showing that nintedanib reduced the effect of PDGF-AA in migration (Fig. S2C). Furthermore, nintedanib reverted significantly the effect of PDGF-AA on expression of the genes related with cell migration such as ADAM-17 (ADAM metallopeptidase domain 17), TIMP-1 (tissue inhibitor of metalloproteinase 1), and TIMP-2 (tissue inhibitor of metalloproteinase 2) (Fig. 1g). No significant differences were found in ADAM-12 (ADAM metallopeptidase domain 12), MMP1 (metalloproteinase 1), MMP2 (metalloproteinase 2), and MMP9 (metalloproteinase 9) (Fig. 1g). To know whether nintedanib treatment modified mRNA expression of skeletal muscle fibroblasts in vitro we analyzed the expression of genes related with muscle fibrosis using Real-Time PCR after 4 days of culture. We observed that nintedanib at 0.4 μM reduced significantly the expression of COL1A1 (Collagen type I alpha 1 chain), COL3A1 (collagen type III alpha 1 chain), FN1 (Fibronectin 1), CTGF (connective tissue growth factor), PDGFA (platelet-derived growth factor A), and TGFB1 (transforming growth factor beta 1) (Fig. 1h). In contrast, we did not observe significant differences in the expression of ACTA-2 (actin, alpha 2, smooth muscle, aorta) or PDGF-B (platelet-derived growth factor B).

Nintedanib had no effect on myoblast differentiation to myotubes in vitro

To analyze whether nintedanib could interfere with myoblast differentiation we cultured confluent human myoblasts in differentiation medium with increasing doses of nintedanib for 7 days. No differences in differentiation index between control myotubes and myotubes treated with nintedanib were observed (Fig. S3A). In addition, we did not find differences in the differentiation index of myoblasts cultured in a medium containing PDGF-AA, b-FGF, or VEGF-A with or without nintedanib (Fig. S3B, C). We also studied whether myotubes treated with nintedanib were more resistant to chemical damage using 0.25 mM sodium dodecyl sulfate (SDS), and we did not see an effect of nintedanib on sarcolemma repair (Figure S3D).

Nintedanib treatment improves electrophysiological tests in mdx mice

We treated 10 months old mdx mice (n = 7) with nintedanib (from now on nintedanib-treated mdx mice) at a dose of 60 mg/kg/day orally for 1 month and compared muscle function tests with 10 months old non-treated mdx mice (from now on mdx mice; n = 5) and 10 months old C57 wild-type mice (from now on WT mice; n = 5). We first performed a DigiGait analysis, which allows identifying differences in the walking pattern of healthy and dystrophic mice. We did not find differences between WT mice, mdx mice, and nintedanib-treated mdx mice, suggesting that the severity of weakness involving muscles of the paws in this murine model at this age is not enough to find differences using this technique (Fig S4).

We then used electrophysiological tests to analyze compound muscle action potential (CMAP) amplitude and morphology of the motor unit action potentials (MUAPs). We detected a statistically significant increase of the CMAP of the peroneus nerve registered at the tibialis anterior muscle in nintedanib-treated mdx mice compared with mdx mice (Fig. 2a). Moreover, we also found a non-significant tendency to an increase of CMAPs recorded in gastrocnemius (GM) and plantar interossei muscles (Fig. 2b, c). We did not identify changes in latency or conduction velocity. Electromyographic studies showed a significant change in the morphology of the MUAPs in the tibialis anterior muscle. WT muscles contained a similar proportion of small and medium MUAPs, whereas mdx mice had predominantly small MUAPs. The analysis of nintedanib-treated mdx mice revealed a significant decrease in the proportion of small MUAPs and an increase in the proportion of medium and large MUAPs, which was statistically significant compared with mdx mice (Fig. 2d–g).

**Fig. 2: Motor nerve conduction tests and electromyographic analysis of WT, *mdx*, and nintedanib-treated *mdx* mice after 4 weeks of treatment.**

Nintedanib treatment reduces muscle fibrosis in mdx mice

The analysis of muscle histology after 1 month of treatment revealed significant differences between nintedanib-treated and non-treated mdx mice without any effect on apoptosis in the muscle of the animals (Fig. S5). We analyzed the diaphragm, which has been reported to be the most affected muscle in mdx mice³¹, the quadriceps and the tibialis anterior of WT, mdx mice, and nintedanib-treated mdx mice. Hematoxilin–eosin staining showed no differences either on the size of the muscle fibers or in the proportion of central nucleated fibers between mdx mice and nintedanib-treated mdx mice (Fig. 3). As nintedanib blocks the VEGF receptor, we also analyzed muscle vascularization. Although we did not find differences in the ratio of CD31-positive vessels per fiber among the three groups of mice, nintedanib treatment tended to reverse the increase observed in the ratio vessels/muscle fibers observed in the mdx mice (Fig.S6). To investigate in vivo the effect of nintedanib in the muscle, we quantified the number of eMHC-positive muscle fibers, which is an early marker of muscle regeneration. We observed a decrease in the number of muscle fibers expressing eMHC, in nintedanib-treated mdx mice compared with mdx mice (Fig. 4). We then analyzed the area of fibrotic tissue present in the skeletal muscles by quantifying collagen VI expression (Fig. 5). We observed a statistically significant reduction in the collagen VI area in the diaphragm (−5.6%), the quadriceps (−8.4%) and in the tibialis anterior muscles (−4.1%) of nintedanib-treated mdx mice compared with mdx mice (Fig. 5).

**Fig. 3: Histological analysis of muscle samples of WT, *mdx* and nintedanib-treated mdx mice.**

**Fig. 4: Nintedanib reduced the number of regenerative muscle fibers in *mdx* mice.**

**Fig. 5: Nintedanib reduced skeletal muscle fibrosis in *mdx* mice.**

The mRNA expression of the extracellular matrix proteins Col1a1, Col3a1, and Fn1, of the growth factors Pdgfa, Pdgfb, Ctgf, and Tgfb1, and of Adgre1 (Adhesion G protein-coupled receptor E1) encoding F4/80, a protein expressed by murine macrophage populations, were significantly increased or showed a tendency to increase in mdx mice compared with WT mice (Fig. 6). The mRNA expression of Col1a1, Col3a, Tgfb1, Pdgfa, and Pdgfb in quadriceps (Fig. 6d, e), diaphragm (Fig. 6l, m), and tibialis anterior muscles (Fig. 6t, u) of nintedanib-treated mdx mice was reduced compared with mdx mice. Adgre1 mRNA expression was decreased by nintedanib in tibialis anterior and quadriceps muscles (Fig. 6o, r, w, y) from nintedanib-treated mdx mice compared with mdx mice. Surprisingly, nintedanib significantly increased Ctgf in the tibialis anterior muscles of mdx mice (Fig. 6v). A similar trend was also detected in the other muscles.

**Fig. 6: RT-qPCR studying mRNA expression of fibrosis-related genes.**

We confirmed the reduced expression of Col1a1 and Col3a1 by WB, with a significant decrease of collagen-1 in the tibialis anterior (p < 0.05) and a trend in the diaphragm (p = 0.08) of nintedanib-treated mdx mice compared with mdx mice (Fig. 7).

**Fig. 7: Nintedanib decreased collagen I expression in *mdx* muscles.**

Effect of nintedanib in heart fibrosis of the mdx mouse

We quantified the collagen VI and collagen III content in heart sections of WT, mdx mice, and nintedanib-treated mdx mice. We did not observe a significant difference in the area positive for collagen VI between WT and non-treated mdx mice (Fig. S7A–D). In contrast, collagen III was increased in mdx mice but it was not modified by nintedanib (Fig. S7E–H). However, gene expression showed a significant decrease in the Col3a1 mRNA expression in nintedanib-treated mdx mice compared with non-treated mdx (Fig. S7J). mRNA expression of the Col1a1, Fn1, Pdgfa, Pdgfb, Ctgf, Tgfb1, and of Adgre1 was also studied. We only observed a decrease in the expression of the Adgre1 gene after treatment with nintedanib (Fig. S7I–P).

Discussion

In the present study, we show that nintedanib reduces skeletal muscle fibrosis of 10 months old mdx mice after 4 weeks of treatment. The decrease in fibrotic tissue was associated with an improvement of muscle function evidenced by electrophysiological tests. In vitro experiments showed that nintedanib decreased fibroblasts proliferation and migration and reduced expression of fibrotic genes, supporting an anti-fibrotic effect of the drug.

Pharmacological approaches to treat muscle dystrophies aim to target the complex mechanism of fiber necrosis and fibrotic and fatty tissue deposition by restoring the proper expression of the mutated gene or by interfering with the pathological fibrotic cascade triggered by the lack of specific proteins³². Advances in the understanding of the fibrotic process have been recently achieved^33,34. Continuous muscle fiber damage is associated with chronic infiltration of skeletal muscles by inflammatory cells, mainly macrophages. These cells release cytokines that contribute to the fibrotic process by activating fibro-adipogenic progenitor cells and fibroblasts resident in the skeletal muscle^22,35. Among these cytokines, the growth factors of the PDGF family may have an important role. A series of evidences from the literature suggest that PDGF-AA has a profibrotic role in muscle dystrophies^{35,36,37,38,39}. Treatment of mdx mice with imatinib, a TKI inhibiting v-Abl, c-kit, and PDGFRα, decreases muscle fibrosis⁴⁰. The role of PDGF-BB is not so clearly established. Whereas it seems that PDGF-BB could have a role in the fibrosis observed in a number of tissues, several authors suggest that it can also play an important role in muscle regeneration in vivo^41,42.

Nintedanib was shown to inhibit fibroblast proliferation and migration in vitro and to exert anti-fibrotic activity in different animal models of lung fibrosis^25,26. We observed that muscle fibrosis was reduced in mdx mice after 4 weeks of treatment with nintedanib. This effect is probably explained by a decreased rate of fibroblasts proliferation, migration and by a reduction of the expression of different components of the extracellular matrix. Skeletal muscle fibrosis in DMD is caused by accumulation of different types of collagens, such as type I, III, and VI and also by fibronectin. We focused on collagen VI and III because they are the major components of the extracellular matrix and their levels correlates with muscle destruction^31,36,43,44. We have observed a reduction in the expression of these extracellular matrix components both in vivo and in vitro. Moreover, we also observed a decrease in the expression of profibrotic growth factors such as PDGF-AA or TGF-β, which can certainly contribute to an attenuation of the fibrotic process in the treated mice. However, we observed an increase in CTGF levels in muscles of nintedanib-treated mdx mice, which could be explained by an enhanced fibrotic pathway not inhibited by our drug. This effect suggests that treatment with a combination of drugs blocking different pathways could have a more powerful anti-fibrotic effect. Using cell culture conditions with only 1% FBS, fibroblast proliferation was stimulated most prominently by PDGF-AA compared with VEGF or bFGF, which had no effect in those culture conditions. Hence, drugs targeting PDGFRα, the main receptor activated by PDGF-AA may be useful in the treatment of muscle dystrophies.

The preclinical investigation of new drugs to treat DMD is hampered by the lack of an animal model, which mimics the severity of muscle degeneration and natural history of the disease in patients. In the mdx mouse model we used, it has been shown that significant changes in muscles cannot be observed until 8–10 months of age⁴⁵. Moreover, despite the presence of clear myopathic changes, mice do not present functional impairment until later in their life. Similar findings would apply to heart involvement. This might explain the absence of differences that we have observed in the Digigait test when comparing healthy C57 mice and non-treated mdx mice. Electrophysiology is an objective test that does not need the collaboration of the mice, providing valuable data about muscle integrity⁴⁶. We observed significant changes in the amplitude of the CMAPs and in the morphology of the MUAPs using electrophysiological tests that were restored with treatment. These results are probably the consequence of early changes in the muscle structure produced by nintedanib that occur before clinical symptoms are observed.

The effect of specific TKIs, such as nintedanib, on the amount of fibrotic tissue present in the skeletal muscles of the patients may also improve muscle homeostasis. It is well known that muscle microenvironment is important for proper tissue regeneration⁴⁷. In the process of muscle degeneration, there is an imbalance between proregenerative and prodegenerative processes. The increase in fibro-adipous tissue and the presence of chronic inflammation seem to impinge satellite cell proliferation, differentiation, and eventually muscle regeneration^48,49. We hypothesize that nintedanib treatment could have a double benefit: (1) it reduces the amount of fibrotic tissue and (2) it could indirectly, restore the balance between proregenerative and prodegenerative processes. Our results support this hypothesis. We observed that nintedanib did not interfere with the differentiation ability of myoblasts in vitro or the resistance of myotubes to chemical damage. However, we did not see an increase in the number of regenerative muscle fibers in the animals treated suggesting that a reduction of the fibrotic process preserves skeletal muscle structure. Indeed, electromyograhy (EMG) studies showing restoration of MUAPs morphology indicate that muscle structure is more preserved in the treated animals supporting this hypothesis. It is important to take into account that we have observed a reduction of fibrotic tissue in an old animal, in which the fibrotic process has already developed. Treatment of younger animals for longer periods of time could result in a more sustained effect, although this needs to be confirmed in further experiments.

Different TKIs have been recently tested in murine models of muscle dystrophy. Imatinib has been tested in the mdx model producing a reduction in fibrotic tissue and in muscle fiber necrosis^21,40,50. However, this drug, that is commonly used as a therapy for chronic myeloid leukemia and gastrointestinal tumors, is potentially associated with cardiac toxicity^51,52,53. Nilotinib has been shown to reduce fibrosis in the mdx model through a mechanism related to the activation of apoptosis of FAP cells mediated by TGF-β ⁴³. Nilotinib has been approved for the treatment of chronic myeloid leukemia and has been also tested in patients with dermal fibrosis^54,55. Crenolanib is a TKI that inhibits selectively PDGFRα being tested in phase II clinical trials of gastrointestinal tumors⁵⁶, melanomas⁵⁷, or even acute myeloid leukemia⁵⁸. This drug was tested in the mdx murine model and produced a reduction in collagen expression in the diaphragm of mdx mice⁵⁹. Our promising results reinforce the potential role of specific TKIs such as nintedanib in the treatment of patients with muscle dystrophies. Nintedanib seems advantageous for a clinical exploration in DMD owing to its proven anti-fibrotic activity in patients with idiopathic pulmonary fibrosis, the fact that it has been approved for clinical use and its good safety profile^24,25. However clinical experience is only available in patients with idiopathic pulmonary fibrosis, which are much older than patients with DMD. The potential impact of nintedanib as VEGFR inhibitor on bone and teeth formation during development in childhood is a safety concern that has to be carefully considered in a clinical testing scenario⁶⁰.

In summary, nintedanib attenuated the fibrosis of skeletal muscles of mdx mice and induced a functional muscular improvement. The reduction of fibroblast proliferation and chemotaxis and the decreased expression of profibrotic genes by nintedanib may explain the mechanism of action of this drug. The data presented in this proof of concept study should be confirmed in larger preclinical studies before supporting a future test of nintedanib in a clinical trial in DMD patients. However, because of the lack of experience in young patients with nintendanib, a clinical trial to test safety, tolerability, and efficacy of the drug is certainly challenging.

Material and methods

Muscle biopsies

Muscle biopsies were obtained from patients who underwent orthopedic surgery. All participants signed an informed consent form and all the procedures were in accordance with the Helsinki Declaration. All in vitro experiments were performed in fibroblasts (proliferation, migration, and mRNA expression studies) and myoblasts (differentiation analysis) isolated from control muscle biopsies (n = 3).

Isolation and culture of myoblasts and fibroblasts from human muscle biopsies

Human myoblasts and fibroblasts were isolated from muscle biopsies of three healthy muscles from control donors. In brief, muscle biopsies were minced into 1–2 mm pieces, transferred onto collagen type I (Sigma, St. Louis, MO)-coated dishes, and incubated in proliferation medium containing Dulbecco's Modified Eagle's Medium (DMEM) and M-199, in a 3:1 proportion, with 15% FBS, 2 mM l-glutamine (all from Lonza, Verviers, Belgium) (Lonza), 5 ng/ml basic fibroblast growth factor (Peprotech, Rocky Hill, NJ), and 1% penicillin–streptomycin (Lonza). After 5–7 days, cells started to sprout from the muscle explants. We isolated myoblasts using anti-CD56 coated microbeads (MiltenyiBiotec, BergischGladbch, Germany) and confirmed that the purity of the samples was higher than 95% performing immunofluorescence with antibodies against CD56 and desmin. Purified human myoblasts were cultured in proliferation medium. Fibroblasts were isolated from the CD56-negative fraction. We confirmed that > 95% of them were fibroblasts using anti-TE7 antibody (Millipore, Billerica, MA) by immunofluorescence. Fibroblasts were maintained in DMEM supplemented with 10% FBS, 2 mM glutamine, and 100 U/ml penicillin–streptomycin. All experiments performed with myoblasts and fibroblasts were repeated with cells isolated from all patients (n = 3) and were replicated in triplicate.

Differentiation and repair assay of human myotubes

Myoblasts were seeded in gelatin-coated cover slips, grown until confluence in proliferation media and then cells were switched to low serum medium (2% of FBS) to induce differentiation in the presence of increasing doses of nintedanib (0.1, 0.2, 0.3, or 0.4 µM). In the repair assay, different doses of Nintedanib were added to untreated myotubes after 7 days of differentiation and incubated overnight and 2 h prior to the assay to ensure an effective inhibition of the TKI. After washing with Hank’s Balanced Salt Solution (HBSS) (Lonza) we added the injury solution (HBSS with 0.25 mM SDS (Sigma) and 1.8 mM CaCl₂ (Sigma)) for 2 min. Control cells were treated with HBSS and 1.8 mM CaCl₂ without SDS. Then, cells were washed with HBSS + 1.8 mM CaCl₂ and incubated in recovery solution consisting of proliferation media at two time points: 90 s and 10 min. After that cells were exposed for 2 min to propidium iodide (Sigma) (20 µg/ml in HBSS) that stains nuclear DNA only if when the cell membrane is injured. Finally cells were washed with HBSS, fixed with 4% of paraformaldehyde (Sigma) in phosphate-buffered saline (PBS) and stained with Hoechst (100 µg/ml in PBS) (Invitrogen, Carlsbad, CA). The total number of nuclei and immunoprecipitation-positive nuclei were counted using Fiji software.

Cell proliferation, viability, and cell death

To study the influence of nintedanib on cell proliferation, we seeded fibroblasts at 2000 cells/cm² and cultured in growth medium containing 15% FBS. In these culture conditions, fibroblasts were treated daily with different concentrations of nintedanib (0.1, 0.2, 0.3, and 0.4 µM) (kindly provided by Boehringer-Ingelheim, Ingelheim, Biberach, Germany). To know which of the growth factors inhibited by nintedanib had a significant effect on fibroblast growth we analyzed cell proliferation on a medium that contained only 1% FBS. We added to the medium 10 ng/ml PDGF-AA (R&D Systems, Minneapolis, MN), 50 ng/ml VEGF-A (PeproTech, INC, Rocky Hill, NJ) or 10 ng/ml bFGF (PeproTech) with or without 0.4 µM nintedanib. Absolute cell numbers and viability, using LIVE/DEAD viability/cytoxicity kit (Invitrogen), were analyzed at days 2, 4, and 6 using MACS flow cytometer analyzer 10 (Miltenyi Biotech). Basal background was established using non-stained cells. To analyze cell death we performed a terminal deoxynucleotidyl transferase dUTP nick end labeling assay in fibroblasts treated with nintedanib and in muscle sections from the animal studies using in situ cell death detection kit (Sigma) following the manufacturer’s instructions. DNase I (Invitrogen) treatment was used as a positive control.

Scratch and transwell assays

Migration of human fibroblasts was assessed using a scratch assay. In brief, human fibroblasts were seeded in proliferation medium until 90% confluence. In one set of experiments medium was changed to DMEM O/N, while in the other set, proliferation medium was maintained. The day after, cultures were scratched with a 0.2 ml pipette sterile tip to create a wound and washed in PBS and photographed. We assessed the effect of different doses of nintedanib (0.1, 0.2, 0.3, and 0.4 μM) on cell migration of proliferating fibroblasts after 24 h. In the set of experiments containing DMEM alone, nintedanib (0.4 μM) was incubated for 2 h. Then, PDGF-AA (20 ng/ml), TGFb (5 ng/ml), CTGF (55 ng/ml), bFGF 10 mg/ml, or VEGF (20 mg/ml) were added, incubated for 24 h, and photographed. Migration was quantified using Image J software. Inhibition of migration was expressed considering 100% as the amount of migration in the conditions without nintedanib. Three pictures of each replicate (n = 3) and each condition were taken using an inverted microscope (Olympus).

Transwell assays were performed in fibroblasts treated with or without 0.4 μM nintedanib for 2 h in a T75 flask. Then, cells were seeded into 8-μm pore-size transwell filters (Corning Incorporated, Corning, NY) at 4 × 10⁴ cells/well in 200 μl of OPTIMEM. In total, 600 μl of OPTIMEM with 10 ng/mL PDGF-AA or vehicle was added to the lower chamber. After 24 h of treatment at 37 °C, cells on the topside of the filter were removed by scrubbing twice with a cotton swab, and cells on the bottom side of the filter and cells in the well (migrating cells) were counted. Cells present in the insert membranes were fixed with methanol 70% for 10 min and stained for 30 min with Hoechst (Invitrogen). After three washes with PBS, filters were cut, mounted onto a slide, and observed with an Olympus fluorescence microscope. Chemotaxis toward Opti-MEM medium was considered as nonspecific chemotaxis.

Fibroblast gene expression

To study fibroblasts mRNA expression, we seeded 3000 fibroblasts per cm² and cultured them in growth medium. Fibroblasts were treated every 24 h with 0.4 μM nintedanib for 4 days and cell pellets were snap frozen with liquid nitrogen for the subsequent RNA processing.

Mouse model

All animal procedures were performed according to the National Institutes of Health Guidelines for the Care and Use of Laboratory Animals and were approved by the Ethical Committee of the Universitat Autònoma de Barcelona. All mice used in the study were male and 10 months old at the start of the treatment period. Nintedanib was solubilized in sterile ultra-pure water (Braun, Rubi, Spain) and delivered to the animals using gavage. We treated seven C57BL/10ScSn-Dmdmdx mice with 60 mg/kg of nintedanib once daily for 4 weeks. As controls we used five untreated C57BL/10ScSn-Dmdmdx mice and five C57BL healthy mice.

After treatment, motor functional and electrophysiological studies were performed. Immediately after functional studies, the animals were euthanized and the diaphragm, tibialis anterior, quadriceps, and heart muscles were collected and frozen.

Motor functional analysis: Digigait assay

Locomotion analysis was performed using the Digigait Imaging system (Mouse Specifics, Quincy, MA). In brief, digital video images of the underside of the mouse were collected with a high-speed video camera (80 frames/s) from below the transparent belt of a motorized treadmill. Each mouse was allowed to explore the treadmill compartment, with the motor speed set to zero, for 5 min. Then, the motor speed was set to 20 cm/s to collect the videos. A minimum of 200 images was collected for each walking mouse so that five to seven strides were captured in each run. Video images of 12.5 ms duration were digitized and the area (in pixels) of the paws was calculated with the DigiGait software.

Motor nerve conduction studies

Motor nerve conduction studies were performed at 10 months of age in all the animals used in the study as previously described⁶¹. The sciatic nerve was percutaneously stimulated through a pair of needle electrodes placed at the sciatic notch, by means of single pulses of 0.02 ms duration (Grass S88). The CMAP was recorded from the tibialis anterior, plantar interossei, and GM muscles with microneedle electrodes⁵⁰. All potentials were amplified and displayed on a digital oscilloscope (Tektronix 450 S) at settings appropriate to measure the amplitude from baseline to the maximal negative peak and the latency from stimulus to the onset of the first negative deflection, to the maximal negative peak and to the end of the wave. The recording needles were placed under microscope, guided by anatomical landmarks, to ensure reproducibility of needle location on all animals. During the tests, the mouse skin temperature was maintained between 34 and 36 °C using a thermostat heating pad. The observers were blinded to the experimental groups.

Electromyography

Electromyography (EMG) recordings of MUAPs were obtained from the tibialis anterior muscle following a similar protocol to that previously described⁶². With the mice under anesthesia, EMG recordings were obtained in resting condition and following light noxious stimuli delivered to the ipsilateral paw to provoke bursts of EMG activity. Signals were digitized (Powerlab 6 T; ADInstruments) and fed into Chart software for post hoc analysis. MUAPs were then categorized into small, medium, and large amplitude as a representation of the three main types of motor units (S, FR, FF)⁶³, and the amplitude and percentage of MUAPs from each class were measured. Von Frey (VF) monofilaments applied to the hind paw were also used to evoke bursts of EMG activity in the ipsilateral muscle. Since the force imposed by the filament is fairly constant, two different VF monofilaments were used to evoke responses, one with a known force of 10 g and 5.07 size and the other with a force of 26 g and a size of 5.46. The EMG responses recorded from the tibialis anterior muscle in response to those mechanical stimuli were recorded and analyzed to measure the area under the curve of each response using Chart software. At least, three different responses for each Von Frey filament were assessed per mouse.

Immunostaining

Muscle samples were frozen in liquid nitrogen-cooled isopentane and serial 7 mm sections were cut with a Leica cryostat (Leica Microsystems, Wetzlar, Germany). For histological description diaphragm, tibialis anterior, quadriceps, and heart were stained with haematoxylin and eosin. Tissue sections were blocked with PBS containing 2% bovine serum albumin and fixed with acetone at room temperature for 10 min. After three washes with PBS, tissue sections were incubated with rabbit polyclonal anti-Collagen type VI (Millipore, Billerica, MA), rabbit anti-Collagen type III (Abcam, Cambridge, UK), mouse monoclonal anti-embryonic Myosin Heavy Chain (eMHC) (DSHB, Iowa City, IA), and rabbit polyclonal CD31 (Abcam). Appropriate Alexa-conjugated secondary antibodies were used. Fibroblasts from cell proliferation studies were stained with anti-Ki-67 (Abcam). In brief, cells were fixed in methanol, washed in PBS, and blocked with 5% goat serum for 1 h. Anti-Ki-67 (1/1000) was incubated for 1 h at room temperature (RT) and after washing steps with PBS, cells were incubated with goat anti-mouse Alexa594 for 1 h at RT. Positive cells were quantified compared with the total number of present cells. Pictures were taken with Olympus BX51 coupled to a DP72 camera. Five random pictures were taken per condition per triplicate.

Collagen content quantification and muscle fibers geometric features extraction

Collagen content was labeled and was used to identify the contours of muscle fibers (darker regions). Aiming to avoid possible artefacts from the samples we took regions of interest (ROIs) with circular shape from each image. The ROIs were selected in regions where the tissue was not altered or broken. To calculate the collagen content in the images we took a maximum of three circular ROIs per image with a diameter of 700 pixels. An adaptive threshold was used to differentiate collagen and muscle fibers, binarizing each image depending of theirs levels of intensity.

To calculate geometric characteristics from the muscle fibers, we used an unique circular ROI with 2200 pixels of diameter. For this procedure, we selected 10 circular ROIs from each type of muscle for each category of mouse. The segmentation procedure and geometric features extraction was similar to the used in previous publications⁶⁴. In this case, we only extracted eight geometrical features from the muscle fibers: mean area, standard deviation area, mean minor axis, mean major axis, mean relation between axis, standard deviation relation between axis, mean convex hull, and standard deviation convex hull. A manual correction step process was introduced to perfectly complete the identification of the fibers outlines. This was done using Adobe Photoshop CS6, followed by the final segmentation process. This final image was used to extract the eight geometric characteristics from all the cells into the ROI of each image.

RNA extraction and reverse transcription

Total RNA was extracted from snap frozen fibroblast pellets and muscle samples of treated, non-treated mdx and control mice using RNeasy® Micro Kit (Qiagen, Hilden, Germany) and TRIzol (Invitrogen) respectively, following manufacturer’s instructions and stored at −80 °C. Contaminating DNA was digested with DNase I (invitrogen). RNA was quantified using a nanodrop ND-1000 spectrophotometer (Nanodrop Technologies Inc., Wilmington, DE, USA) and integrity was checked by 1% agarose gel electrophoresis. In all, 1 μg of total RNA was reverse-transcribed to complementary DNA (cDNA) using the High Capacity cDNA Reverse Transcription Kit (Applied Biosystems, Foster City, CA, USA).

Real-time quantitative PCR (TaqMan) analysis

Real-Time PCR (qPCR) of cDNA obtained from cells and mouse tissues was performed using the TaqMan® Universal PCR Master Mix (Applied Biosystems, Foster City, CA, USA) and a 7900HT Fast Real-Time PCR System (Applied Biosystems, Foster City, CA). All mRNA-specific FAM-labeled primers/probe were purchased from Applied Biosystems and detected cDNA from the following genes: Ctgf (Mm01192933_g1), Pdgfa (Mm01205760_m1), Pdgfb (Mm00440677_m1), Tgfb1 (Mm01178820_m1), Col1a1 (Mm00801666_g1), Col3a1 (Mm01254476_m1), Fn1 (Mm01256744_m1), Adgre1 (Mm00802529_m1), PDGFA (Hs00964426_m1), CTGF (Hs01026927_g1), PDGFB (Hs00966522_m1), TGFB1 (Hs00998133_m1), COL1A1 (Hs00164004_m1), COL3A1 (Hs00943809_m1), FN1 (Hs01549976_m1), ACTA (Hs00426835_g1), MMP9 (Hs00957562_m1), MMP2 (Hs01548727_m1), MMP1 (Hs00899658_m1), TIMP-1 (Hs99999139_m1), TIMP-2 (Hs00234278_m1), ADAM-12 (Hs01106101_m1), ADAM-17 (Hs01041915_m1), TP53 (Hs01034249_m1). All the experiments were performed in triplicate. Relative quantification was performed using the comparative Ct method and all results were compared with the control samples for each treatment after normalizing to an endogenous control (GAPDH (Hs99999905_m1) in the case of human fibroblasts and Tuba4a (Mm00849767_s1) in the case of mice using the Relative Quantification Manager software (Applied Biosystems, Foster City, CA). Data in bar graphs are presented as mean ± standard deviation of three independent samples in the case of fibroblasts, five in the case of C57 and mdx and seven in the case of treated mdx mice.

Western blot

Total proteins from diaphragm, tibialis anterior, and quadriceps muscles were extracted in radioimmunoprecipitation assay lysis buffer (Sigma, St. Louis, MO) supplemented with 1% protease inhibitor cocktail (Roche, Indianapolis, IN) and 1% phosphatase inhibitor cocktail (Roche). The protein levels were measured using the bicinchoninic acid protein assay (Thermoscientific, Rockford, IL). Protein samples (50 μg) were denatured and separated on 10% sodium dodecyl sulfate polyacrylamide gel electrophoresis before transfer onto a polyvinylidene difluoride membrane and blocked with casein (Thermofisher, Rockford, IL). The blots were probed using different rabbit polyclonal anti-Collagen I antibodies (Abcam, Cambridge, UK). The blots were further incubated with secondary antibodies conjugated to fluorophores (LI-COR, Lincoln, Nebraska) and visualized using an Odyssey Imaging System (LI-COR). Protein levels were expressed relative to α-tubulin. Mouse monoclonal anti-α-tubulin antibody was purchased from Sigma (St. Louise, MO).

Statistics

We used Student’s t test to compare quantitative measures between samples and analysis of variance to study repeated measures. Statistical significance was obtained at p < 0.05. Statistical studies were performed with SPSS® Statistics software version 21 from IBM® and graphics were developed using GraphPad Prism 5.01 software (La Jolla, CA).

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Acknowledgements

We thank the people of the Neuromuscular Disorders Unit laboratory and the animal room staff at Sant Pau Hospital. We thank Anna Molins for the technical support to the experiments. We also thank Marisol Montolio, from DPPE, for her comments and continuous support. This study has been funded by Duchenne Parent Project Spain, Fundación Isabel Gemio and Boehringer-Ingelheim and a grant from Fondo de Investigaciones Sanitarias (FISS) PI15/ 01822 (J.D-M.). L.M.E., and P.G.-G. are supported by the Ramón y Cajal program (PI13/01347); L.M.E., and P.G.-G. are supported by the Ramón y Cajal program (PI13/01347); L.M.E, and P.G.-G. work is funded by the Ministry of Economy, Industry and Competitiveness grant BFU2016-74975-P co-funded by FEDER funds.

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These authors contributed equally: Patricia Piñol-Jurado, Xavier Suárez-Calvet.

Authors and Affiliations

Neuromuscular disorders Unit, Neurology department, Universitat Autònoma de Barcelona, Hospital de la Santa Creu I Sant Pau, Barcelona, Spain
Patricia Piñol-Jurado, Xavier Suárez-Calvet, Esther Fernández-Simón, Eduard Gallardo, María Pérez-Peiró, Noemi de Luna, Isabel Illa & Jordi Díaz-Manera
Centro de Investigación Básica en Red en Enfermedades Raras (CIBERER), Madrid, Spain
Xavier Suárez-Calvet, Eduard Gallardo, Noemi de Luna, Isabel Illa & Jordi Díaz-Manera
Department of Cell Biology, Physiology and Immunology, Institute of Neurosciences, Universitat Autònoma de Barcelona, Bellaterra, Barcelona, Spain
Natalia de la Oliva, Anna Martínez-Muriana & Xavier Navarro
Centro de Investigación Biomédica en Red sobre Enfermedades Neurodegenerativas (CIBERNED), Valencia, Spain
Natalia de la Oliva, Anna Martínez-Muriana & Xavier Navarro
Departamento de Biología Celular, Universidad de Sevilla and Instituto de Biomedicina de Sevilla (IBiS), Hospital Universitario Virgen del Rocío/CSIC/Universidad de Sevilla, 41013, Sevilla, Spain
Pedro Gómez-Gálvez & Luis M. Escudero
Immunology & Respiratory Diseases Research, Boehringer-Ingelheim, Biberach, Germany
Lutz Wollin

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Patricia Piñol-Jurado
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Xavier Suárez-Calvet
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Esther Fernández-Simón
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Patricia Piñol-Jurado, Xavier Suárez-Calvet, Esther Fernández, Eduard Gallardo, Natalia de la Oliva, Anna Martínez-Muriana, Pedro Gómez-Gálvez, Luis M. Escudero, María Pérez-Peiró, Noemi de Luna, Xavier Navarro, and Isabel Illa have not any relevant conflict of interest. Lutz Wollin is an employee of Boehringer-Ingelheim the inventor of nintedanib used in this study. Jordi Díaz-Manera has received a research grant from Boehringer-Ingelheim.

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Piñol-Jurado, P., Suárez-Calvet, X., Fernández-Simón, E. et al. Nintedanib decreases muscle fibrosis and improves muscle function in a murine model of dystrophinopathy. Cell Death Dis 9, 776 (2018). https://doi.org/10.1038/s41419-018-0792-6

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Received: 10 December 2017
Revised: 24 May 2018
Accepted: 14 June 2018
Published: 10 July 2018
DOI: https://doi.org/10.1038/s41419-018-0792-6

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