Abstract
Immune cells modify their metabolic pathways in response to fungal infections. Nevertheless, the biochemical underpinnings need to be better understood. This study reports that fungal infection drives a switch from glycolysis to the serine synthesis pathway (SSP) and one-carbon metabolism by inducing the interaction of spleen tyrosine kinase (SYK) and phosphoglycerate dehydrogenase (PHGDH). As a result, PHGDH promotes SYK phosphorylation, leading to the recruitment of SYK to C-type lectin receptors (CLRs). The CLR/SYK complex initiates signaling cascades that lead to transcription factor activation and pro-inflammatory cytokine production. SYK activates SSP and one-carbon metabolism by inducing PHGDH activity. Then, one-carbon metabolism supports S-adenosylmethionine and histone H3 lysine 36 trimethylation to drive the production of pro-inflammatory cytokines and chemokines. These findings reveal the crosstalk between amino acid metabolism, epigenetic modification, and CLR signaling during fungal infection.
This is a preview of subscription content, access via your institution
Access options
Subscribe to this journal
Receive 12 print issues and online access
$259.00 per year
only $21.58 per issue
Buy this article
- Purchase on SpringerLink
- Instant access to full article PDF
Prices may be subject to local taxes which are calculated during checkout
Similar content being viewed by others
Data availability
The original contributions presented in the study are included in the article or the supplementary material. This paper does not report original code. Other data that support the findings are available from the corresponding author upon reasonable request.
References
Brown GD, Denning DW, Gow NA, Levitz SM, Netea MG, White TC. Hidden killers: human fungal infections. Sci Transl Med. 2012;4:165rv113.
Fisher MC, Hawkins NJ, Sanglard D, Gurr SJ. Worldwide emergence of resistance to antifungal drugs challenges human health and food security. Science. 2018;360:739–42.
Arastehfar A, Carvalho A, Houbraken J, Lombardi L, Garcia-Rubio R, Jenks JD, et al. Aspergillus fumigatus and aspergillosis: From basics to clinics. Stud Mycol. 2021;100:100–15.
Morrell M, Fraser VJ, Kollef MH. Delaying the empiric treatment of candida bloodstream infection until positive blood culture results are obtained: a potential risk factor for hospital mortality. Antimicrob Agents Chemother. 2005;49:3640–5.
Sanglard D. Emerging threats in antifungal-resistant fungal pathogens. Front Med. 2016;3:11.
Romani L. Immunity to fungal infections. Nat Rev Immunol. 2011;11:275–88.
Hardison SE, Brown GD. C-type lectin receptors orchestrate antifungal immunity. Nat Immunol. 2012;13:817–22.
Mocsai A, Ruland J, Tybulewicz VL. The SYK tyrosine kinase: a crucial player in diverse biological functions. Nat Rev Immunol. 2010;10:387–402.
Gross O, Gewies A, Finger K, Schäfer M, Sparwasser T, Peschel C, et al. Card9 controls a non-TLR signalling pathway for innate anti-fungal immunity. Nature. 2006;442:651–6.
Geijtenbeek TB, Gringhuis SI. Signalling through C-type lectin receptors: shaping immune responses. Nat Rev Immunol. 2009;9:465–79.
Cueto FJ, Del Fresno C, Sancho D. DNGR-1, a dendritic cell-specific sensor of tissue damage that dually modulates immunity and inflammation. Front Immunol. 2019;10:3146.
Chabner BA, Roberts TG. Jr. Timeline: Chemotherapy and the war on cancer. Nat Rev Cancer. 2005;5:65–72.
Ducker GS, Rabinowitz JD. One-carbon metabolism in health and disease. Cell Metab. 2017;25:27–42.
Kory N, Wyant GA, Prakash G, UitdeBos J, Bottanelli F, Pacold ME, et al. SFXN1 is a mitochondrial serine transporter required for one-carbon metabolism. Science. 2018;362:eaat9528.
Shyh-Chang N, Locasale JW, Lyssiotis CA, Zheng Y, Teo RY, Ratanasirintrawoot S, et al. Influence of threonine metabolism on S-adenosylmethionine and histone methylation. Science. 2013;339:222–6.
Locasale JW. Serine, glycine and one-carbon units: cancer metabolism in full circle. Nat Rev Cancer. 2013;13:572–83.
Ma EH, Bantug G, Griss T, Condotta S, Johnson RM, Samborska B, et al. Serine is an essential metabolite for effector T cell expansion. Cell Metab. 2017;25:482.
DeBerardinis RJ, Thompson CB. Cellular metabolism and disease: what do metabolic outliers teach us? Cell. 2012;148:1132–44.
Liu X, Cooper DE, Cluntun AA, Warmoes MO, Zhao S, Reid MA, et al. Acetate production from glucose and coupling to mitochondrial metabolism in mammals. Cell. 2018;175:502–513 e513.
Lewis CA, Parker SJ, Fiske BP, McCloskey D, Gui DY, Green CR, et al. Tracing compartmentalized NADPH metabolism in the cytosol and mitochondria of mammalian cells. Mol Cell. 2014;55:253–63.
Li X, Sun X, Carmeliet P. Hallmarks of endothelial cell metabolism in health and disease. Cell Metab. 2019;30:414–33.
Lee WD, Pirona AC, Sarvin B, Stern A, Nevo-Dinur K, Besser E, et al. Tumor reliance on cytosolic versus mitochondrial one-carbon flux depends on folate availability. Cell Metab. 2021;33:190–8 e196.
Ashkavand Z, O’Flanagan C, Hennig M, Du X, Hursting SD, Krupenko SA. Metabolic reprogramming by folate restriction leads to a less aggressive cancer phenotype. Mol Cancer Res. 2017;15:189–200.
Nilsson R, Jain M, Madhusudhan N, Sheppard NG, Strittmatter L, Kampf C, et al. Metabolic enzyme expression highlights a key role for MTHFD2 and the mitochondrial folate pathway in cancer. Nat Commun. 2014;5:3128.
Gonçalves SM, Duarte-Oliveira C, Campos CF, Aimanianda V, Ter Horst R, Leite L, et al. Phagosomal removal of fungal melanin reprograms macrophage metabolism to promote antifungal immunity. Nat Commun. 2020;11:2282.
Yu W, Wang Z, Zhang K, Chi Z, Xu T, Jiang D, et al. One-carbon metabolism supports s-adenosylmethionine and histone methylation to drive inflammatory macrophages. Mol Cell. 2019;75:1147–60.
Pikman Y, Ocasio-Martinez N, Alexe G, Dimitrov B, Kitara S, Diehl FF, et al. Targeting serine hydroxymethyltransferases 1 and 2 for T-cell acute lymphoblastic leukemia therapy. Leukemia. 2022;36:348–60.
Sedding DG, Tröbs M, Reich F, Walker G, Fink L, Haberbosch W, et al. 3-deazaadenosine prevents smooth muscle cell proliferation and neointima formation by interfering with ras signaling. Circulation Research. 2009;104:1192–1200.
Nguyen TA, Pang KC, Masters SL. Intercellular communication for innate immunity. Mol Immunol. 2017;86:16–22.
Richardson JP, Moyes DL. Adaptive immune responses to Candida albicans infection. Virulence. 2015;6:327–37.
Zhu LL, Zhao XQ, Jiang C, You Y, Chen XP, Jiang YY, et al. C-type lectin receptors Dectin-3 and Dectin-2 form a heterodimeric pattern-recognition receptor for host defense against fungal infection. Immunity. 2013;39:324–34.
Ma C, Zheng K, Jiang K, Zhao Q, Sha N, Wang W, et al. The alternative activity of nuclear PHGDH contributes to tumour growth under nutrient stress. Nat Metab. 2021;3:1357–71.
Coopman PJP, Do MTH, Barth M, Bowden ET, Hayes AJ, Basyuk E, et al. The Syk tyrosine kinase suppresses malignant growth of human breast cancer cells. Nature. 2000;406:742–7.
Reid MA, Allen AE, Liu S, Liberti MV, Liu P, Liu X, et al. Serine synthesis through PHGDH coordinates nucleotide levels by maintaining central carbon metabolism. Nat Commun. 2018;9:442.
Henikoff S, Shilatifard A. Histone modification: cause or cog? Trends Genet. 2011;27:389–96.
Shilatifard A. Chromatin modifications by methylation and ubiquitination: implications in the regulation of gene expression. Annu Rev Biochem. 2006;75:243–69.
Topchu I, Pangeni RP, Bychkov I, Miller SA, Izumchenko E, Yu J, et al. The role of NSD1, NSD2, and NSD3 histone methyltransferases in solid tumors. Cell Mol Life Sci. 2022;79:285.
Lam UTF, Tan BKY, Poh JJX, Chen ES. Structural and functional specificity of H3K36 methylation. Epigenetics & Chromatin. 2022;15:17.
Chen K, Liu J, Liu S, Xia M, Zhang X, Han D, et al. Methyltransferase SETD2-mediated methylation of STAT1 Is critical for interferon antiviral activity. Cell. 2017;170:492–506.
Wang X, Zhang H, Shao Z, Zhuang W, Sui C, Liu F, et al. TRIM31 facilitates K27-linked polyubiquitination of SYK to regulate antifungal immunity. Signal Transduct Target Ther. 2021;6:298.
Liu S, Liu L, Xu G, Cao Z, Wang Q, Li S, et al. Epigenetic modification is regulated by the interaction of influenza a virus nonstructural protein 1 with the De Novo DNA methyltransferase DNMT3B and subsequent transport to the cytoplasm for K48-linked polyubiquitination. J Virol. 2019;93:e01587-18.
Locasale JW, Grassian AR, Melman T, Lyssiotis CA, Mattaini KR, Bass AJ, et al. Phosphoglycerate dehydrogenase diverts glycolytic flux and contributes to oncogenesis. Nat Genet. 2011;43:869–74.
Possemato R, Marks KM, Shaul YD, Pacold ME, Kim D, Birsoy K, et al. Functional genomics reveal that the serine synthesis pathway is essential in breast cancer. Nature. 2011;476:346–50.
Funding
This work was supported by the National Key Research and Development Program of China (2021YFC2701800, 2021YFC2701804), the Fundamental Research Funds for the Central Universities (2042022dx0003), the Fundamental Research Funds for the Central Universities (2042021kf023), the National Natural Science Foundation of China (81872262) and Deutsche Forschungsgemeinschaft (Transregio TRR60).
Author information
Authors and Affiliations
Contributions
QWW and ADC conceived and designed the experiment. XYY, DDH, XYS,YCG and YZ performed the experiments.CXS, SL,CYZ and GPL analyzed the data. XYY, DDH and ADC processed and typeset the figures. SL, CYZ and QWW wrote the manuscript. All authors read and approved the final manuscript.
Corresponding authors
Ethics declarations
Competing interests
The authors have declared that no conflict of interest exists.
Ethics
The guidelines outlined in the Declaration of Helsinki were followed when collecting clinical samples. The Nanjing Medical University Institutional Review Board authorized protocols that adhered to standards for the safety of human participants. Each study participant gave written informed consent for sample collection and analysis. Mice were raised and used in particular pathogen-free environments following Nanjing Medical University-approved guidelines. The National Institutes of Health Guide for the Care and Use of Laboratory Animals was followed in all animal experimentation.
Additional information
Publisher’s note Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
Supplementary information
Rights and permissions
Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.
About this article
Cite this article
Zhang, X., Hu, D., Sun, X. et al. PHGDH/SYK: a hub integrating anti-fungal immunity and serine metabolism. Cell Death Differ (2024). https://doi.org/10.1038/s41418-024-01374-7
Received:
Revised:
Accepted:
Published:
DOI: https://doi.org/10.1038/s41418-024-01374-7