Abstract
Cardiac fibrosis is a common precursor to ventricular dysfunction and eventual heart failure, and cardiac fibrosis begins with cardiac fibroblast activation. Here we have demonstrated that the TGF-β signaling pathway and Wnt signaling pathway formed a transactivation circuit during cardiac fibroblast activation and that miR-384-5p is a key regulator of the transactivation circuit. The results of in vitro study indicated that TGF-β activated an auto-positive feedback loop by increasing Wnt production in cardiac fibroblasts, and Wnt neutralizing antibodies disrupted the feedback loop. Also, we demonstrated that miR-384-5p simultaneously targeted the key receptors of the TGF-β/Wnt transactivation circuit and significantly attenuated both TGF-β-induced cardiac fibroblast activation and ischemia-reperfusion-induced cardiac fibrosis. In addition, small molecule that prevented pro-fibrogenic stimulus-induced downregulation of endogenous miR-384-5p significantly suppressed cardiac fibroblast activation and cardiac fibrosis. In conclusion, modulating a key endogenous miRNA targeting multiple components of the TGF-β/Wnt transactivation circuit can be an effective means to control cardiac fibrosis and has great therapeutic potential.
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Introduction
Although cardiac fibrosis initially occurs as a compensatory response to maintain the structural and functional integrity of the damaged heart, when it is severe and prolonged, ventricular dysfunction and, ultimately, heart failure can result [1, 2]. Activation of fibroblasts or myofibroblast (myoFB) formation by various cytokines constitutes an early event in cardiac fibrosis. For example, during the first 0-4 days after cardiac injury, called the inflammatory phase, massive death of cardiomyocytes occurs and the expressions of cytokines such as transforming growth factor-beta (TGF-β) increase, causing an inflammatory response. For the next 3–4 days, called the reparative phase, cytokines activate cardiac fibroblasts (CFs), which triggers the deposition of fibrogenic extracellular matrix [3]. In adult mammals, the fibrotic scar is permanent and further promotes reactive fibrosis, which increases myocardial stiffness and reduces compliance [2]. Therefore, prevention of CF activation can be an effective means to control cardiac fibrosis.
Both TGF-β [4,5,6] and Wnt signaling pathways [7] significantly contribute to cardiac fibrosis, and a possible interaction between these two pro-fibrogenic pathways has been suggested. Previous studies have reported that TGF-β-induced skin fibrosis requires Wnt signaling activation [8] and that Wnt3a induces myoFB differentiation of mouse embryonic fibroblasts in a TGF-β and β-catenin-dependent manner [9]. Recently, it was demonstrated that TGF-β controls myoFB formation via Wnt secretion in autoimmune myocarditis [10]. These studies strongly imply the existence of a TGF-β/Wnt transactivation circuit in fibrosis. Therefore, a careful examination of the mechanisms that underlie such a pro-fibrogenic transactivation circuit may provide critical information for developing a therapeutic strategy to disrupt the circuit and subsequently prevent cardiac fibrosis and heart failure.
MicroRNAs (miRNAs) negatively regulate the expression of target genes at the post-transcriptional level [11]. Presumably, thousands of miRNAs regulate approximately 30% of all coding genes in humans, affecting virtually every aspect of biological processes [12,13,14]. Therefore, miRNAs may contribute to the initiation and maintenance of the TGF-β/Wnt transactivation circuit, if it exists. Furthermore, since a single miRNA can target multiple genes simultaneously [15], a key miRNA that affects both signaling pathways may exist. In this study, as a proof of concept, we examined the hypotheses that a key miRNA mediates the formation and maintenance of a TGF-β/Wnt transactivation circuit and that modulating the expression of the key miRNA will disrupt the circuit, preventing progression of cardiac fibrosis.
Result
Characterization of primary cultured CFs
To characterize the primary cultured CFs, a number of parameters, including activation marker expressions before and after TGF-β treatment were evaluated (Supplementary Fig. 1), and the results indicated that our in vitro model of TGF-β-mediated activation of CF worked properly.
TGF-β activates canonical Wnt signaling in CFs
The expressions of cytoplasmic beta-catenin (β-catenin) and phosphorylated glycogen synthase kinase 3 beta (p-GSK3βser9), which are representative markers of canonical Wnt signaling activation [16], were increased by TGF-β (Fig. 1a). TGF-β significantly increased the nuclear translocation of β-catenin, a hallmark of activated canonical Wnt signaling [16], indicating that TGF-β activated canonical Wnt signaling in CFs at the given concentration (Fig. 1b).
Effect of ischemia/reperfusion and TGF-β on the expression of Wnts and related receptors
Wnt signaling is initiated by combinatorial interactions between 19 different Wnt ligands [17] and 10 different frizzled receptors (Fzds) [18]. Previous studies have reported that Fzd1 and Fzd2 were upregulated in cardiac myoFBs [19], and inhibition of the interaction between Wnt3a/Wnt5a and their putative receptors, Fzd1/Fzd2, prevented heart failure after myocardial infarction [20]. In this study, the mRNA expressions of Fzd1, Fzd2, Wnt3a, and Wnt5a significantly increased in the ischemia/reperfusion (I/R)-injured heart (Supplementary Fig. 2). In TGF-β treated CFs, the mRNA expressions of Fzd1 and Fzd2 significantly increased at 12 h (Fig. 1c, left panel), and Wnt3a mRNA expression also significantly increased at 1 h and thereafter up to 12 h. However, TGF-β had no significant effect on Wnt5a mRNA expression (Fig. 1c, right panel). A previous study examined the effect of secreted Frizzeled-related protein 2 (sFRP2) on Wnt3a and Wnt5a expression in CFs reported similar observation that sFRP2 significantly increased the Wnt3a expression, while it decreased the Wnt5a expression [21], suggesting that the transcription of those Wnt ligands may utilize different mechanisms. We speculated that cells other than CFs may be responsible for the observed increase of Wnt5a in the I/R-injured heart, and co-immunostaining results of I/R-injured heart showed that the expressions of Wnt3a and ER-TR7, a fibroblast marker, were co-localized (Supplementary Fig. 3a), while Wnt5a expression was co-localized to that of CD68 expression (Supplementary Fig. 3b).
Wnt3a mediates TGF-β-induced activation of an auto-positive feedback via NF-kB in CFs
TGF-β induces the expression of Wnt proteins via TGF-β-activated kinase 1 (TAK1) pathway [10]. TGF-β-induced TAK1 activation can lead to the activation of nuclear factor kappa-light-chain-enhancer of activated B cells (NF-kB), JNK, or p38 [22]. In this study, TGF-β did not affect the expressions of phosphorylated JNK and p38, whereas the expression of phosphorylated TAK1 and p65, a marker of NF-kB activation [23], significantly increased (Supplementary Fig. 4a) by TGF-β. Caffeic acid phenethyl ester (CAPE), a potent inhibitor of NF-kB (Supplementary Fig. 4b) [24], significantly decreased the expression of both p-IKKα and Wnt3a (Fig. 1d), indicating that TGF-β-induced Wnt3a production was mediated by NF-kB. Furthermore, Wnt3a significantly increased the expression of both β-catenin and TGF-β (Supplementary Fig. 5a), and TGF-β significantly increased the mRNA expression of TGF-β itself in a time-dependent manner for up to 4 h (Supplementary Fig. 5b). These data suggested that TGF-β activated an auto-positive feedback loop mediated by Wnt3a. Wnt3a-neutralizing antibodies significantly attenuated the expressions of β-catenin and p-GSK3βser9 and also significantly suppressed TGF-β and collagen type I expressions (Fig. 1e). Furthermore, both CAPE and FH535, a Wnt/β-catenin signaling inhibitor [25], significantly suppressed the production of TGF-β (Fig. 1f). These data indicate that TGF-β induces production of Wnt3a, which in turn increases TGF-β production, establishing a transactivation circuit between TGF-β and Wnt signaling pathways in CFs.
MiR-384-5p targets multiple receptors of the TGF-β/Wnt transactivation circuit
A single miRNA can target multiple genes simultaneously. Therefore, a key miRNA that regulates the initiation and maintenance of the circuit affecting both signaling pathways may exist. To find such miRNA(s), a miRNA-target mRNA prediction database (www.targetscan.org) was utilized. Because ligands of TGF-β and Wnt signaling can be also produced by cardiac cells other than CFs, downregulation of ligands in CFs may not be sufficient to disrupt the circuit in vivo. Thus, key receptors of the circuit were assumed as primary targets in the screening of miRNAs. Fzd1 and Fzd2 have been implicated in cardiac fibrosis [19], and they were also increased in the present study (Fig. 1c and Supplementary Fig. 2). Tgfbr1 is one of the main receptors for TGF-β signaling [26], and Lrp5 and Lrp6 are well-known co-receptors for Wnt signaling [27]. Thus, these 5 receptors were chosen as possible primary targets. Among the miRNAs predicted to target each receptor (Supplementary Tab. 1), only 2 miRNAs (miR-141-3p and miR-384-5p) were predicted to target 4 out of 5 receptors, namely, Fzd1, Fzd2, Tgfbr1, and Lrp6 (Fig. 2a). As shown in Fig. 2b, compared to miR-141-3p, miR-384-5p significantly suppressed the expressions of predicted targets. To verify whether the decreased expression was directly mediated by miR-384-5p, luciferase assays were conducted (Fig. 2c). The luciferase activity was significantly decreased by miR-384-5p in all cases, indicating that those 4 receptors were direct targets of miR-384-5p (Fig. 2d).
Lastly, the expression of miR-384-5p in I/R-injured heart or in TGF-β-treated CFs was examined. As shown in Fig. 2e, the expression of miR-384-5p significantly decreased at 3 and 7 days after the I/R injury, and 24 h of TGF-β treatment also significantly decreased the expression of miR-384-5p in CFs. These data suggest that miR-384-5p is a key regulator of the circuit and downregulation of miR-384-5p during I/R-injury promotes CF activation and subsequent cardiac fibrosis by enhancing the expression of key receptors of the circuit.
MiR-384-5p attenuates the activation of TGF-β and Wnt signaling
The effects of miR-384-5p on TGF-β and Wnt signaling pathways were examined. As shown in Fig. 3a, miR-384-5p inhibited the activation of Smad pathway. Furthermore, miR-384-5p inhibited nuclear translocation of pNF-kB (Fig. 3b) and DNA binding of NF-kB p65 (Supplementary Fig. 6). MiR-384-5p decreased the phosphorylation of GSK3βser9 and β-catenin (Fig. 3c), and this indicated that miR-384-5p suppressed the TGF-β-induced activation of Wnt/β-catenin signaling in CFs. Moreover, miR-385-5p prominently attenuated the TGF-β-induced nuclear translocation of β-catenin (Fig. 3d).
MiR-384-5p inhibits CF activation
Exogenous miR-384-5p (100 nM, 24 h) significantly decreased the expression of both α-SMA (Supplementary Fig. 7) and collagen type I (Fig. 3e), suggesting attenuated CF activation. Collagen gel contraction analysis demonstrated that miR-384-5p significantly attenuated TGF-β-induced collagen contractility of CFs (Fig. 3f). The results of migration assays indicated that miR-384-5p suppressed migration of TGF-β-treated CFs (Fig. 3g).
MiR-384-5p attenuates cardiac fibrosis following I/R-injury
Exogenous miR-384-5p (10 μg/head) was delivered to the heart following I/R-injury. Up to 14 days after the injury, the level of miR-384-5p was well maintained (Fig. 4a). The expressions of Fzd-1, Fzd-2, Lrp6, and Tgfbr1 significantly decreased with miR-384-5p delivery (Fig. 4b). Most importantly, exogenous miR-384-5p significantly attenuated cardiac fibrosis (Fig. 4c) as evidenced by the significantly decreased fibrotic area (Fig. 4d) and well-maintained left ventricular (LV) wall thickness (Fig. 4e). Furthermore, I/R-induced decline of heart function evaluated by cardiac output (Fig. 4f), systemic volume (Fig. 4g), and ejection fraction (Fig. 4h) was significantly attenuated by exogenous miR-384-5p.
The liver, kidney, and spleen of animals were H & E stained to examine any significant adverse effect following miR-384-5p administration. The key structures of the organs examined (portal vein, Bowman’s capsule, and white pulp for the liver, kidney, and spleen, respectively) were intact and no significant tissue damage was observed (Supplementary Fig. 8). These data indicated that exogenous miR-384-5p significantly suppressed cardiac fibrosis and improved heart function without any significant adverse effect.
Screening of small molecules enhancing endogenous miR-384-5p expression
Through a screening using an in-house small-molecule library that mainly comprised commercially available inhibitors of six kinase subfamilies [28], a small molecule that upregulated endogenous miR-384-5p was identified. Among the small molecules tested, small molecule number 145 (Drug 145; D145) most significantly increased miR-384-5p in CFs (Fig. 5a), and the identity of D145 was azathioprine, a well-known immunosuppressive agent [29]. To visualize D145-induced expression of miR-384-5p, Cy3-modified molecular beacons specific to miR-384-5p were used (Fig. 5b). When molecular beacon loaded CFs were treated with 10 μM D145 for 48 h, Cy3 signal in CFs prominently increased (Fig. 5c), indicating that D145 increased miR-384-5p in CFs. When the cells were treated with increasing concentrations of D145 (1, 2.5, 5, and 10 μM), the expression of miR-384-5p was significantly increased at concentrations of 2.5 μM or higher (Fig. 5d).
D145 suppresses the expression of Fzd1, Fzd2, Tgfbr1, and Lrp5 and activation of TGF-β and Wnt/β-catenin signaling
Whether the D145-induced increase of miR-384-5p could be translated into actual downregulation of the receptors of interest was examined. D145 significantly decreased the expressions of Fzd1, Fzd2, Tgfbr1, and Lrp6 (Fig. 6a). Importantly, the effect of D145 was abrogated by anti-miR-384-5p treatment, demonstrating that the effect of D145 was due to enhanced expression of endogenous miR-384-5p. Next, the effect of D145 on TGF-β and Wnt signaling pathways was examined. D145 inhibited nuclear translocation of pNF-kB (Fig. 6b) and Smad pathway (Fig. 6c). Also, D145 decreased phosphorylation of GSK3βser9 (Fig. 6d) and attenuated TGF-β-induced nuclear translocation of β-catenin (Fig. 6e). These results indicated that the effect of D145 was similar to that of exogenous miR-384-5p.
D145 attenuates TGF-β-induced CF activation
D145 significantly decreased the expression of collagen type I (Fig. 7a) and α-SMA (Fig. 7b), indicating that TGF-β-induced CF activation was significantly attenuated by D145. Furthermore, D145 significantly suppressed migration (Fig. 7c) and collagen contractility (Fig. 7d) of TGF-β-treated CFs. D145 also significantly attenuated the increase of CF proliferation following TGF-β treatment. However, such anti-proliferative effect of D145 was abrogated by anti-384-5p (Supplementary Fig. 9), indicating that even the anti-proliferative effect of D145 was miR-384-dependent.
D145 attenuates cardiac fibrosis following I/R-injury
D145 was intravenously (i.v.) injected via tail vein immediately after I/R-injury at a concentration of 10 μM (The whole blood volume of an individual rat was approximated as 7% of the body weight) [30]. The expression of miR-384-5p in the D145-treated group was well maintained for 2 weeks after the injury (Fig. 8a). To evaluate any organ-specific and/or general toxicity, multiple organs were weighed [31], and the weights were not significantly affected by D145, suggesting no serious in vivo adverse effects or toxicity of D145 (Fig. 8b). Next, the expressions of Fzd1, Fzd2, Tgrbr1, and Lrp6 were significantly suppressed by D145 (Fig. 8c). Most importantly, D145 significantly attenuated cardiac fibrosis (Fig. 8d), significantly decreasing the size of the fibrotic area (Fig. 8e) and preserving the LV wall thickness (Fig. 8f). D145 also significantly improved cardiac output, systemic volume, and ejection fraction (Fig. 8g). Taken altogether, D145 significantly suppressed cardiac fibrosis by preventing the decrease of miR-384-5p in the heart following I/R-injury.
Discussion
Previous studies have provided circumstantial evidence of a fibrogenic cross-talk between TGF-β and Wnt pathways by demonstrating that they can mutually activate each other in diseases involving myoFB formation [8,9,10]. Nevertheless, existence of such a transactivation circuit has not been examined nor experimentally confirmed in CF activation. In this study, we verified that those two pathways were indeed linked by demonstrating that exogenous TGF-β increased the production of Wnt3a in an NF-kB-dependent manner (Fig. 1c) and that both neutralization of Wnt3a (Fig. 1d) and suppression of Wnt/β-catenin signaling (Fig. 1e) disrupted the TGF-β auto-positive feedback loop. Thus, the present study is the first to report the existence of a TGF-β/Wnt transactivation circuit (hereafter referred to as the circuit) in TGF-β-induced activation of CF. However, a thorough verification of the circuit, especially in vivo, would be extremely challenging because of other growth factors and cytokines [32, 33], which may affect the circuit. Therefore, providing direct in vivo evidence for a functioning circuit remains an issue that should be fully addressed in further studies.
Another significant finding of this study is the identification of miR-384-5p as an important regulator of the circuit. Our data suggested that miR-384-5p enhanced the expressions of key receptors (i.e., Fzd1, Fzd2, Tgfbr1, and Lrp6 in the present study) by being decreased in response to fibrogenic stimuli (Fig. 2e). The increased key receptors initiate and maintain the circuit, contributing to the progression of cardiac fibrosis. This speculation was indirectly verified by the observations of miR-384-5p-mediated suppression of CF activation in vitro (Fig. 3) and of improved cardiac function with attenuated cardiac fibrosis in vivo (Fig. 4). However, the present study did not cover the underlying mechanism of how fibrogenic stimuli downregulate miR-384-5p expression, and it remains to be one of the limitations of the present study.
Regarding the two miRNAs predicted to target the key receptors of the circuit (Fig. 2a), miR-384-5p is reportedly downregulated in ischemic diseases and in failing heart [34,35,36], whereas increased expression of miR-141-3p following ischemic preconditioning has been reported [37], supporting the legitimacy of choosing miR-384-5p over miR-141-3p as a key miRNA that regulates the circuit. Regarding the role of miR-384-5p in cardiovascular disease, one study reported that miR-384-5p exerted a pro-apoptotic effect in cardiomyoblasts in vitro [38]. This particular study claimed that miR-384-5p increased the expression of caspase 3 and decreased the viability of cardiomyoblasts. However, it did not clearly indicate the concentration of miRNA mimics used, making it difficult to evaluate and generalize their findings. We can only speculate that the observed effect of miR-384-5p was cell-type specific or that the effect was an artifact caused by an improper concentration of miRNA mimics. Interestingly, even the aforementioned study demonstrated that the expression of miR-384-5p decreased by 60% in the ischemic myocardium. To better comprehend the role of miR-384-5p in the cardiovascular system, investigating the effects of miR-384-5p on different types of cardiac cells other than fibroblasts will be a good subject for further studies.
The most clinically relevant finding of this study is the prevention of cardiac fibrosis mediated by D145. To bypass current limitations of direct in vivo delivery of miRNAs, such as low cellular uptake, off-target effects, and instability in serum [39], small-molecule-mediated regulation of endogenous miR-384-5p was utilized as an alternative strategy to modulate the expressions of key receptors involved in the circuit in vivo. The selected small molecule D145 significantly attenuated TGF-β-induced downregulation of miR-384-5p (Fig. 5d) and suppressed TGF-β-induced activation of CFs in vitro (Fig. 7). However, our unpublished data showedd that D145 at a higher concentration ( > 10 μM) failed to further enhance the expression of miR-384-5p, suggesting that D145 may act on saturable target(s) such as enzymes involved in miR-384-5p biosynthesis. Unfortunately, the exact mechanism still remains elusive and we are currently conducting a further study specifically aimed to identify the underlying mechanisms of miR-384-5p regulation by D145 and fibrogenic stimuli such as TGF-β.
In addition to suppressing TGF-β-induced activation of CFs in vitro, D145 significantly attenuated cardiac fibrosis and improved cardiac function following I/R-injury in vivo (Fig. 8). Although the D145-mediated recovery of endogenous miR-384-5p in the presence of fibrogenic stimuli (Fig. 8a) and downregulation of the key receptors (Fig. 8c) following I/R-injury indicated that the anti-fibrotic effect of D145 was mediated by the disruption of the circuit as proposed, additional unforeseen mechanisms may function in vivo. Unlike in vitro conditions where biological variables are relatively well-controlled and minimized (e.g., single cell type and single treatment) in vivo condition includes a wide variety of cells and a number of soluble factors. Therefore, unexpected mechanism(s) of action may also contribute to the outcomes of an in vivo experiment. Therefore, an overview of other plausible mechanisms that might have contributed to the observed anti-fibrotic effect of D145 is required to interpret the outcomes correctly and to design further in vivo studies adequately.
The very first possibility is that the downregulation of Wnt signaling has anti-fibrogenic effects on cardiac cells other than CFs [40]. Downregulation of β-catenin enhances resident precursor cell differentiation and attenuates ischemic cardiac remodeling [41], and a small-molecule inhibitor of Wnt signaling improves the contractile function in the infarcted heart [42]. Furthermore, blocking Fzd-mediated Wnt signaling by using either a soluble decoy for the Wnt protein [43] or siRNA-that is specific to Fzd [44] prevented apoptosis of cardiomyocytes, supporting the possibility that D145 acts as a regulator of a Wnt-based niche in the I/R-injured heart.
Another possibility is based on the pharmaceutical nature of D145. The identity of D145 is azathioprine, a well-known immunosuppressive agent [29]. The immunosuppressive effect of azathioprine is achieved via inhibition of CD28-mediated signaling [45]. CD28 is a homodimeric stimulatory receptor that is expressed on T cells and mediates co-stimulation of T cells [46]. Recently, studies have reported that inhibition of T-cell co-stimulation [47] or CD28 deficiency [48] has a protective effect on pressure overload-induced congestive heart failure. Therefore, D145 may have protected the I/R-injured heart by not only disrupting the circuit but by also suppressing the immune response following I/R-injury. Additionally, as a purine analogue, D145 inhibits the DNA replication in rapidly dividing cells, such as lymphocytes, and TGF-β is also released by infiltrating lymphocytes [49]. Therefore, it is also possible that D145 decreased the overall production of TGF-β following I/R injury by inhibiting the proliferation of infiltrated lymphocytes. However, these possibilities will remain speculative until they are experimentally confirmed.
The present study has provided strong evidence of a TGF-β/Wnt transactivation circuit in CFs and identified miR-384-5p as a key regulator of the circuit (Fig. 8h). In the clinical context, it was demonstrated that modulating a key miRNA targeting multiple fibrogenic mediators can be an effective means to control cardiac fibrosis and that small-molecule-mediated regulation of endogenous miRNA has significant therapeutic potential as a clinically viable alternative to direct application of exogenous miRNAs. To fully address the unanswered issues, further studies are warranted.
Methods
Isolation of neonatal rat CFs
The hearts of 8-week-old Sprague–Dawley rat pups were used for the study. The extracted ventricle was washed with Dulbecco’s phosphate-buffered saline (DPBS) solution (pH 7.4, Gibco BRL, Grand Island, NY, USA) without Ca2+ and Mg2+. Using micro-dissecting scissors, hearts were minced to pieces of approximately 1 mm3 and treated with 10 ml of collagenase II (0.8 mg/ml, 262 units/mg, Gibco BRL, Grand Island, NY, USA) for 5 min at room temperature. The initial supernatant was discarded by decantation and the remained tissues were treated with fresh collagenase II solution for an additional 5 min at 37 °C. The supernatant containing cells was transferred to a tube containing cell culture medium (DMEM/F-12 containing 10% fetal bovine serum, Gibco BRL, Grand Island, NY, USA), and centrifuged at 1200 r.p.m. for 4 min at room temperature. The cell pellets were re-suspended in 5 ml of cell culture medium. The above procedures were repeated 7–9 times until little tissues were left. The cell suspensions were collected and incubated in 100 mm tissue culture dishes for 30 min for attachment. Unattached cells were discarded by changing culture medium. Attached fibroblasts were then cultured with DMEM/F-12 containing 10% (v/v) FBS in a CO2 incubator at 37 °C. CFs with passages between 1 and 3 were used for all studies.
Cell proliferation assay
CFs were treated with 10 μM of D145 for 48 h with or without the anti-miR-384-5p pretreatment in a 96 well plate. Relative cell proliferation was determined by using cell counting kit (CCK, Dojindo, Japan). Briefly, WST-8 [2-(2-methoxy-4-nitrophenyl)-3-(4-nitrophenyl)-5-(2,4-disulfophenyl)-2H-tetrazolium, monosodium salt] solution (1:10, v/v) was added to each well and incubated at 37 °C for 2 h to allow formation of WST-8 formazan. The Absorbance of a water soluble formazan dye was measured at 450 nm.
MicroRNA transfection
MicroRNAs and scrambled RNA oligomer (negative control scrambled miRNA, N.C.) were purchased from Genolution Inc. (Seoul, Korea). Transfection of microRNAs was performed using a TransIT-X2 system (Mirus Bio LLC, Madison, WI, USA). Briefly, cells were seeded at a density of 7 × 105 cells per 60 mm culture plates. The TransIT-X2 reagent was diluted with Opti-MEM and combined with microRNA mimics. The mixture was added to each well. After 24 h of incubation in a CO2 incubator at 37 °C, the medium was changed to fresh 10% FBS DMEM.
Reverse transcription polymerase chain reaction (RT-PCR)
Total RNA was extracted using TRIzol (Sigma-Aldrich, St Louis, MO, USA, 500 μL per 60 mm culture dish). Chloroform (100 μL) was added to the extract and each sample was vortexed for 15 s. The mixtures were centrifuged at 12,000 r.p.m. for 15 min at 4 °C, and the transparent upper layer was collected in a new tube. Each sample was mixed with 300 μL of isopropanol. The samples were centrifuged at 12,000 r.p.m. for 10 min at 4 °C. The supernatant was discarded and the pellet was washed using 75% (v/v) ethanol. The samples were centrifuged at 12,000 r.p.m. for 5 min at 4 °C, and the supernatant was discarded. The pellet was air-dried at room temperature, and dissolved in 20 μL of nuclease-free water. Complementary DNA (cDNA) was generated using 500 ng of total RNA with AccuPower PT PreMix (Bioneer, Seoul, Korea) according to the manufacturer’s instructions. The PCR conditions consisted of denaturing at 94 °C for 3 min, followed by 25 cycles of denaturation at 94 °C for 30 s, annealing at 55 °C for 30 s, and extension at 72 °C for 30 s, before a final extension at 72 °C for 10 min. PCR products were separated by electrophoresis in 1.2% (w/v) agarose gels (Bio-Rad, Hercules, CA, USA). Glyceraldehyde-3-phosphate dehydrogenase (Gapdh) was used as an internal standard.
Real-time polymerase chain reaction (Real-time PCR)
Total RNA extraction procedure was identical to that of RT-PCR. cDNA was generated using 10 ng of purified total RNA with Taqman® MicroRNA Reverse Transcriptase Kit (Applied Biosystems, Foster City, CA, USA) in combination with Taqman® MicroRNA Assays. For normalization, U6 control transcripts were used. Amplification and detection of specific products were performed in a Step One plus Real-Time PCR system (Applied Biosystems, Foster City, CA, USA) at 95 °C for 10 min, followed by 40 cycles of 95 °C for 15 s and 60 °C for 60 s.
Luciferase reporter assay
The 3’UTR fragment of each targeted gene (covering 50 bp upstream and 50 bp downstream of the miR-384-5p-binding sequence) was used for luciferase assay. Approximately 120 bp-long 3′-UTR fragment of each target was PCR amplified by using primers containing XhoI (forward) and SalI (Reverse) enzyme site. The PCR product was then cloned into pmirGLO Dual Luciferase vector (Promega, Madison, WI, USA) using the XhoI and SalI enzyme site. For transfection, Hela cells were seeded in 24-well plate at a density of 5 × 104 cells/well. When the cells reached confluency of near 80%, 500 ng of pmirGLO vectors containing the 3’UTR fragment was transfected by using lipofectamin LTX system (Invitrogen, Carlsbad, CA, USA) according to the manufacturer’s recommendation. 24 h after the transfection, luciferase activity was measured using Dual-luciferase reporter assay system (Promega, Madison, WI, USA). The Renilla luciferase was used to normalize the cell number and the transfection efficiency.
Promoter assay
The promoter region of rno-miR-384-5p from -1 up to -3000 was amplified using KpnI site containing forward primers containing set of 5′-AAGGTACCATAGATCTGTAATAACTC-3′ (1000 bp fragment, F1), 5′-AAGGTACCTTCTCAGCTAACCAGCTC-3′ (1,250 bp fragment, F2), 5′-AAGGTACCGAGAGCAGTGTAGAGCTC-3′ (1,500 bp fragment, F3), 5′-AAGGTACCAAGAGAGTGTATACCAT-3′ (1,750 bp fragment, F4), 5′-AAGGTACCGTATGTTTAGCTTTCT TT-3′ (2000 bp fragment, F5), and 5′-AAGGTACCGGTACTCTTCATTTCTTT-3′ (3000 bp fragment, F6). For XhoI site containing reverse primer, 5′-AACTCGAGTAACATTTCGCTGCAACA-3′ was used. PCR amplicons were digested with KpnI and XhoI, and inserted into the pGL3-basic vector (Promega, Madison, WI, USA). For transfection, HeLa cells were seeded in 24-well plate at a density of 5 × 104 cells/well. When the cells reached confluency of near 80%, 500 ng of pGL3 vectors containing the promoter fragment was transfected by using lipofectamin LTX system (Invitrogen, Carlsbad, CA, USA) according to the manufacturer’s recommendation. 24 after the transfection, luciferase activity was measured.
Western blot
The cells were washed in PBS and lysed in lysis buffer (Cell Signal Technology, Danvers, MA, USA). Protein concentrations were determined using the BCA Protein Assay Kit (Thermo Fisher Scientific, Waltham, MA, USA). Equal amount of proteins were separated in a sodium dodecyl sulfate-polyacrylamide gel (SDS-PAGE) and transferred to a polyvinylidene difluoride membrane (Millipore, Billerica, MA, USA). After blocking the membrane by using Tris-buffered saline-Tween 20 (TBS-T, 0.05% Tween 20) and 10% skim milk for 1 h at room temperature, the membranes were incubated with appropriate primary antibodies. Antibodies specific to α-SMA and β-actin were purchased from Abcam (Cambridge, UK), and the following antibodies were purchased from Cell Signaling Technology (Danvers, MA, USA): Collagen type I, p-JNK, JNK, p-GSK-3β, GSK-3β, p-P65, P65, p-P38, p38, p-IKKα, Fzd1, Lrp6, p-Smad and Smad. Antibodies specific to Collagen type III, p-CamK II, CamK II, β-catenin, p-TAK1, Wnt3a, TGF-β, and Tgfbr1 were from Santa Cruz Biotechnology (Dallas, TX, USA). Additionally, antibodies specific to Lamin B2 (Invitrogen, Carlsbad, CA, USA) and Fzd-2 (OriGene, Rockville, MD, USA) were also used. After incubation with appropriate antibodies overnight at 4 °C, the membrane was washed three times with 0.05% TBS-T for 10 min each and then incubated for 1 h at room temperature with horseradish peroxidase-conjugated secondary antibodies. The immune-positive bands were detected by an enhanced chemiluminescence (ECL) reagent (Santa Cruz Biotechnology, Dallas, TX, USA). The band intensities were quantified using NIH Image J version 1.34e software.
Nuclear and cytoplasmic extraction
For nuclear and cytoplasmic extraction, NE-PER Nuclear and Cytoplasmic Extraction Reagents (Thermo Fisher Scientific, Waltham, MA, USA) were used according to the user manual provided by the manufacturer.
NFkB p65 transcription factor assay
To assess the transcription factor p65 binding, a NFkB p65 transcription factor assay kit (Abcam, Cambridge, UK) was used according to the user manual provided by the manufacturer. Briefly, the cells were transfected with 100 nM of either miR-384-5p or anti-miR-384-5p for 24 h, and then exposed to 5 ng/ml TGF-β for 1 h. Nuclear extracts (5 μg) were used to determine the binding of NF-κB p65 in each group.
Immunocytochemistry
CFs were cultured in four-well slide chambers at a density of 2.2 × 104. The cells were permeabilized using 0.1% Triton X-100 for 10 min. Next, the cells were blocked for 1 h in a blocking solution (2% bovine serum albumin and 10% horse serum in PBS) and incubated with α-SMA (Abcam, Cambridge, UK), Vimentin (Abcam, Cambridge, UK), vWf (Santa Cruz Biotechnology, Dallas, TX, USA), p65 (Cell Signaling Technology, Danvers, MA, USA) and β-catenin antibodies (Santa Cruz Biotechnology, Dallas, TX, USA). FITC-conjugated mouse and rabbit secondary antibodies (Jackson ImmunoResearch Laboratories, West Grove, PA, USA) were used. Immunofluorescence was detected by a confocal microscope (LSM710; Carl Zeiss Microscopy GmbH, Jena, Germany).
Immunohistochemistry
To identify fibroblast, rat monoclonal ER-TR7 antibodies (Santa Cruz Biotechnology, Dallas, TX, USA) were used and rabbit polyclonal CD68 antibodies (Abcam, Cambridge, UK) were used as a macrophage marker. For detection of Wnt3a and Wnt5a, Alexa Fluor 488 conjugated mouse monoclonal Wnt3 antibodies (Santa Cruz Biotechnology, Dallas, TX, USA) and mouse monoclonal Wnt5a antibodies (Santa Cruz Biotechnology, Dallas, TX, USA) were used, respectively. In brief, I/R-injured heart sections (7d) were blocked in 2.5% normal horse serum and incubated overnight with respective antibodies at 4 °C. Texas red- conjugated anti-rat IgG (Jackson Immuno Research Laboratories, West Grove, PA, USA) or FITC-conjugated anti-rabbit IgG (Jackson Immuno Research Laboratories, West Grove, PA, USA) was used as secondary antibody.
Co-localization Image analysis
The degree of co-localization was measured by ZEN 2009 Light Edition software that calculated the percentage of co-localized pixels relative to all pixels obtained. Following Carl Zeiss Micro-imaging, the Pearson’s correlation coefficient R (PCC) value was calculated. The value for PCC can range from -1 to 1, and a value of 1 indicates that the fluorescence patterns of the two molecules are perfectly matched [50].
Wound healing assay
CFs were plated at a density of 2.5 × 105 cells/well in six-well plates. When the cells reached 90% confluence, cells were starved for 12 h. After starvation, scratches were produced with 200 μl pipette tips and images were captured using an Axiovert 40 C inverted microscope (Carl Zeiss Microscopy GmbH, Jena, Germany) equipped with a Powershot A640 digital camera (Canon, Tokyo, Japan). The medium was replaced with or without small molecule and TGF-β. The migrated area was captured at 0, 24, or 48 h after the TGF-β-treatment and the percent of area re-covered by growth was calculated.
Transwell migration assay
CFs (0.6 × 104cells) were plated in the upper chamber of Transwell assay plates with 8 µm filter pore size (Costar Corning, Corning, NY, USA). The cells were incubated in serum deprivation media for 12 h, and small molecule was added to upper chamber. After 1 h, TGF-β was added to the bottom chamber, and incubated at 37 °C for 24 h. After incubation, the migrated cells were stained with 0.25% crystal violet. Non-migrated cell on the inside of the upper chamber were removed with cotton swabs.
Collagen gel contraction assay
CFs were transfected miR-384-5p or anti-miR-384-5p at concentration 100 nM and 50 nM, respectively, for 24 h. After additional 24 h of incubation in culture media containing 10% FBS, the cells were re-suspended in medium at a density of 3 × 106 cells/ml. Subsequently, 100 μl cell suspension was mixed with 400 μl collagen solution (Sigma-Aldrich, St Louis, MO, USA) and 1 M NaOH. Five hundred μl of the mixture was caste into 24-well cell culture plates and incubated at 37 °C for 1 h for polymerization. After 1 h, 600 μl of DMEM was added to each well, and gels were released from the surface of the plate by using a pipette tip. Drug 145 was pretreated for 1 h and TGF-β (5 ng/ml) was added.
Antibody neutralization assay
CFs (2.2 × 105 cells) were plated in 6-well culture plates. Wnt3a-neutralizing antibodies or IgG control antibodies (15 ug/ml, each). were added to appropriate wells 1 h prior to TGF-β treatment. After 24 h of TGF-β treatment, cells were lysed for western blot analysis.
Detection of miR-384-5p using molecular beacon
Molecular beacons for detecting miR-384-5p were prepared by annealing Cy3-modified long sequence (Cy3-ACATTTATTAAGGATCCGTTACA) and black hole quencher (BHQ1) modified short sequence (BHQ1-TGTAAATAAT). After seeding CFs in 96 well culture plates, the cells were treated with 10 μM of D145 or transfected with increasing concentrations of miR-394-5p (10, 20, and 50 nM) for 48 h. To detect miR-384-5p, molecular beacons were delivered to CFs at a concentration of 50 nM using a lipofectamin LTX system. After 24 h after the molecular beacon delivery, Cy3 fluorescence was detected by using a confocal microscope (LSM710; Carl Zeiss Microscopy GmbH, Jena, Germany).
Rat cardiac ischemia/reperfusion (I/R) injury model
All experimental procedures for animal studies were approved by the Committee for the Care and Use of Laboratory Animals, Yonsei University College of Medicine, and performed in accordance with the Committee’s Guidelines and Regulations for Animal Care. I/R-injury was produced in male Sprague–Dawley rats (200 ± 50 g) by surgical occlusion of the left anterior descending coronary artery. Briefly, after induction of anesthesia with zoletil (0.8 ml/kg) and rompun (0.2 ml/kg), the rats were intubated, and ventilation (62 strokes/min, tidal volume 8–10 ml/kg) was maintained using a Harvard ventilator (Holliston, MA, USA). After intubation, the third and fourth ribs were cut to open the chest, and the heart was exteriorized through the intercostal space. The left coronary artery was then ligated 2–3 mm from its origin with a 6-0 prolene suture (Ethicon, Somerville, NJ, USA). Reperfusion was conducted after 1 h of ischemia. For transplantation, microRNA (10 μg/head) and reagent mixture were prepared in 60 μl and injected from the injured region to the border using a Hamilton syringe (Hamilton Co., Reno, NV, USA) with a 30 gauge needle. For drug injection, D145 was intravenously (i.v.) injected right after I/R-injury at concentration of 10 μM (whole blood volume of an individual rat was approximated as 7% of body weight). Throughout the operation, animals were ventilated with 95% O2 and 5% CO2 using a Harvard ventilator (Holliston, MA, USA). For each group, 5 animals (ligation, miR-384-5p injection, Drug 145 injection, DMSO injection and Reagent injection) were used. Animals were sacrificed 1 to 2 weeks after the surgery for analysis, depending on experiments conducted.
Functional analysis of heart
For invasive hemodynamics, left ventricular catheterization was performed at 2 weeks after I/R and treatment. A Millar Micro-tip 2 F pressure transducer (model SPR-838, Millar Instruments, USA) was introduced into the left ventricle via the right carotid artery under zoletil (20 mg/kg) and xylazine (5 mg/kg) anesthesia. Real-time pressure volume loops were recorded and data were analyzed with PVAN 3.5 software (Millar).
Statistical analysis
Quantitative data are presented as mean ± S.E.M. of at least 3 independent experiments. For statistical analysis, Student’s t test was used to compare two experimental groups, or one-way ANOVA with Bonferroni correction was performed using OriginPro 8 SR4 software (ver. 8.0951, OriginLab Corporation, Northampton, MA, USA) if there were more than 3 groups. A p value of less than 0.05 was considered statistically significant.
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Acknowledgements
This study was supported by grants funded by the Korea Ministry of Science, ICT and Future Planning (NRF-2015M3A9E6029519 and NFR-2015M3A9E6029407).
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Seo, HH., Lee, S., Lee, C.Y. et al. Multipoint targeting of TGF-β/Wnt transactivation circuit with microRNA 384-5p for cardiac fibrosis. Cell Death Differ 26, 1107–1123 (2019). https://doi.org/10.1038/s41418-018-0187-3
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DOI: https://doi.org/10.1038/s41418-018-0187-3
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