RIPK1 is an essential downstream component of many pattern recognition and death receptors. RIPK1 can promote the activation of caspase-8 induced apoptosis and RIPK3-MLKL-mediated necroptosis, however, during development RIPK1 limits both forms of cell death. Accordingly, Ripk1−/− mice present with systemic cell death and consequent multi-organ inflammation, which is driven through the activation of both FADD-caspase-8 and RIPK3-MLKL signaling pathways causing perinatal lethality. TRADD is a death domain (DD) containing molecule that mediates signaling downstream of TNFR1 and the TLRs. Following the disassembly of the upstream receptor complexes either RIPK1 or TRADD can form a complex with FADD-caspase-8-cFLIP, via DD-DD interactions with FADD, facilitating the activation of caspase-8. We show that genetic deletion of Ripk1 licenses TRADD to complex with FADD-caspase-8 and activates caspase-8 during development. Deletion of Tradd provided no survival advantage to Ripk1−/− animals and yet was sufficient to reduce the systemic cell death and inflammation, rescue the intestinal and thymic histopathologies, reduce cleaved caspases in most tissues and rescue the anemia observed in Ripk1−/− neonates. Furthermore, deletion of Ripk3 is sufficient to rescue the neonatal lethality of Ripk1−/−Tradd−/− animals and delays but does not completely prevent early mortality. Although Ripk3 deletion provides a significant survival advantage, Ripk1−/−Tradd−/−Ripk3−/− animals die between 22 and 49 days, are runty compared to littermate controls and present with splenomegaly. These findings reveal a new mechanism by which RIPK1 limits apoptosis through blocking TRADD recruitment to FADD and preventing aberrant activation of caspase-8.
Receptor interacting serine protein kinase 1 (RIPK1) is a protein that harbors both kinase activities and scaffolding roles, and is involved in a number of signaling pathways that regulate the events downstream of Tumor necrosis factor receptor 1 (TNFR1), Toll-like receptors (TLRs), Retinoic acid-inducible gene I (RIG-I) and Interferons [1,2,3,4,5]. Genetic studies in mice have demonstrated the importance of RIPK1 in the maintenance of tissue homeostasis, revealing that RIPK1 is an essential inhibitor of both apoptotic and necroptotic cell death during development [6,7,8,9,10]. Ripk1 knockout mice present with severe multi-organ inflammation and systemic cell death, which causes lethality of Ripk1−/− animals late in gestation or shortly after birth [6–8, 11]. This lethality is rescued by co-deletion of caspase-8 and Ripk3 leading to the survival of these animals until adulthood [6,7,8]. The numerous Ripk1−/− induced pathologies observed in these animals are in part due to the activation of both TNFR1 and Myeloid differentiation primary response 88 (Myd88) driven pathways [6, 8]. Deletion of Tnfr1 is sufficient to ameliorate large intestinal damage in Ripk1-/- animals and, depending on the background, Ripk1−/−Tnfr1−/− mice have delayed mortality [6, 12] or are provided no protection against the Ripk1 knockout induced perinatal lethality or the systemic inflammation . On the other hand, co-deletion of Myd88 reduces the systematic inflammation allowing mice to survive to P4 . Deletion of the necroptotic effectors Receptor interacting protein kinase 3 (RIPK3) or Mixed Lineage Kinase Domain Like Pseudokinase (MLKL) affords protection against Ripk1−/− induced systemic inflammation, skin hyperplasia and anemia, while providing no protection against the caspase-8 driven intestinal damage . Collectively these genetic studies demonstrate that RIPK1 inhibits both Fas-associated protein with death domain (FADD)-caspase-8 driven apoptosis and RIPK3-mediated necroptosis during development. Consistently, in various cellular settings, the activation of both apoptotic and necroptotic cell death pathways can be RIPK1 independent [13,14,15,16,17]. Activation of RIPK3 in the absence of RIPK1 during development has recently been shown to be dependent on the protein DNA dependent activator of Interferon regulatory factors (DAI), whereby the RIP homotypic interaction motif (RHIM) domain of RIPK1 prevents the association of DAI with RIPK3, limiting RIPK3 activation [18, 19]. On the other hand, the mechanism leading to the activation of the FADD-caspase-8 axis in the absence of RIPK1 during development has not been described.
Downstream of TNFR1, survival-signaling pathways such as NF-κB are initially activated from a primary signaling complex (complex-I) to prevent the activation of caspase-8 through the up-regulation of inhibitory proteins such as cFLIP. Removal of the cellular inhibitor of apoptosis proteins (cIAPs) [20,21,22], inhibition of MAP kinase-activated protein kinase 2 (MK2) [23,24,25,26,27], inhibition of Transforming growth factor β-activated kinase 1 (TAK1)  or inhibition of protein synthesis using cycloheximide [29, 30] leads to cell death which is driven through the formation of secondary complexes containing either Tumor necrosis factor receptor type 1-associated death domain protein (TRADD)-FADD-cFLIP-caspase-8 (complex-IIa), RIPK1-FADD-cFLIP-caspase-8 (complex-IIb) or RIPK3-MLKL (complex-IIc/necrosome) [31, 32] depending on the insult.
Given that both TRADD and RIPK1 contain a death domain and both can interact directly with FADD to drive caspase-8 activation in cells, we hypothesized that the activation of caspase-8 in the absence of RIPK1 in vivo was TRADD-mediated. We now demonstrate that although Ripk1−/−Tradd−/− animals still die perinatally, they show a full rescue of the caspase-8-driven intestinal and thymic phenotypes and an overall reduction in the cleavage of caspases within multiple tissues. Ripk1−/−Tradd−/− mice still exhibit systemic inflammation and skin hyperplasia, presumably due to RIPK3/MLKL activation, but show significantly reduced amounts of systemic apoptosis and are no longer anemic. Deletion of Ripk3 provided significant, albeit incomplete, survival advantage to Ripk1−/−Tradd−/− mice, which interestingly highlights clear differences between Ripk1−/−Tradd−/−Ripk3−/− animals and Ripk1−/−Casp-8−/− Ripk3−/− animals.
Tradd deficiency prevents Ripk1 −/− induced pathology in multiple organs but provides no survival advantage to Ripk1 −/− neonates
To assess the role of TRADD in the cell death and inflammation driven pathologies induced by Ripk1 deletion we generated Ripk1−/−Tradd−/− mice and found that co-deletion of Tradd provides no survival advantage to Ripk1−/− neonates (Fig. 1a, b) with Ripk1−/−Tradd−/− pups typically being found dead at, or shortly after, birth. We did, however, observe that loss of Tradd completely rescued the large intestinal phenotype of Ripk1-/- mice; characterized by a lack of goblet cells, a shortening of crypt lengths and a sloughing of intestinal cells into the lumen (Fig. 1c–e and S1). In addition, these animals show a clear rescue of the thymic histopathology characteristic of Ripk1−/− animals, as previously described [8, 11] (Fig. 1c and S1). Tradd deficiency did not ameliorate the Ripk1−/− induced epidermal hyperplasia and resulted in only a modest decrease in Keratin-6 staining, a wound-induced gene which is usually confined to hair follicles in healthy skin but is highly expressed throughout the epidermis of Ripk1−/− mice. The significant amelioration of the Ripk1−/−-induced histopathologies seen upon co-deletion of Tradd closely mimicked the rescue seen in Ripk1−/−Tnfr1−/− neonates (Fig. 1c), but like the Tnfr1 deletion provided no survival advantage to Ripk1−/− neonates on a C57BL/6 background .
Ripk1 −/− anemia, but not the increase in white blood cell production, is rescued by co-deletion of tradd
Ripk1−/− mice have severe anemia and neutrophilia, with a massive increase in circulating inflammatory cytokines and chemokines detectable within the plasma of these animals [8, 33]. Interestingly, co-deletion of Tradd is sufficient to prevent the anemia but not the increase in white blood cell production (Fig. 2a and S2A). Normal numbers of red blood cells in Ripk1−/−Tradd−/− animals correlates with a restoration of reticulocytes measured via ADVIA (Fig. 2a) and re-confirmed by blood smear analysis of immature red blood cells (Figure S2A and S2D). We previously reported that Ripk1−/−Myd88−/− mice have a normal hematocrit and a marked reduction in the neutrophilia seen in Ripk1−/− mice . On the other hand, Ripk1−/−Tnfr1−/− animals have normal reticulocyte numbers yet still present with anemia; characterized by a reduction in total red blood cells and % hematocrit (Fig. 2a).
Tradd deficiency reduces the systemic inflammation and hyperproliferation observed in Ripk1 −/− mice
Cytokines in the plasma and skin of Ripk1−/−Tradd−/− animals were significantly reduced compared to Ripk1−/− mice, albeit still higher than their wild type counterparts (Fig. 2b, c, S2B and S2C). In the plasma, Tradd deletion resulted in a stronger reduction in a subset of cytokines than Tnfr1 deletion (Fig. 2b), suggesting a role for TRADD independent of TNFR1 signaling. Consistent with the skin phenotypes, the level of leukocyte infiltration (CD45 + ) within the livers and skins of Ripk1−/−Tradd−/− mice (E18.5) was unchanged when compared to Ripk1−/− or Ripk1−/−Tnfr1−/− mice (Fig. 2d). There were no notable differences in CD11b positive cells between any of the genotypes within the liver and skin (Figure S2E) or in a panel of other tissue sections (data not shown). Ki67 staining showed hyper proliferation through the entire crypt length and thymic lobes of Ripk1−/− mice, while Ripk1−/−Tradd−/−, and consistently the Ripk1−/−Tnfr1−/−, present a Ki67 staining pattern concordant with normal thymic and colonic structure (Fig. 2f). No observable differences in Ki67 staining were observed in a panel of other tissues (Figure S2F).
Tradd deficiency prevents caspase-3 activation in multiple Ripk1 −/− tissues
Cell death driven through the activation of caspase-8 and caspase-3 is a key event in the disruption of multiple tissues within Ripk1−/− animals [6,7,8]. Importantly, Tradd deletion reduced the activation of caspase-3 reflected by a reduction in the number of cells with cleaved caspase-3 in the colon, thymus and small intestine (Fig. 3a, b). The reduction in cleaved caspase-3 positive cells across several tissues in the absence of Tradd mimicked reductions seen in Ripk1−/−Tnfr1−/− animals, suggesting that the TNFR1-TRADD axis is required for cell death during development in the absence of RIPK1 (Fig. 3a and S3A). However, when we analyzed levels of cleaved caspase-3 within the skin and the bone marrow of Ripk1−/−Tradd−/− animals we observed no reduction in cleaved caspase-3 staining via immuno-histochemistry, demonstrating that caspase-3 can be activated via TRADD independent mechanisms in the skin of Ripk1−/− animals (Fig. 3a and S3B). Notably within the plasma of Ripk1−/− neonates we saw that Ripk1−/−Tradd−/− mice had less cleaved caspase-3 than Ripk1−/−Tnfr1−/− mice (Fig. 3c). Taken together our results suggest that the TNFR1-TRADD signaling pathway is central to the multi-organ pathologies seen in Ripk1−/− animals but that TRADD is also involved in signaling pathways outside of TNFR1.
Cell death and inflammatory markers are altered in a tissue specific manner upon deletion of tradd from Ripk1 −/− neonates
In order to obtain a detailed insight into the effects of Tradd deletion in both apoptotic and necroptotic tissues, we assayed known markers of these signaling pathways in whole tissues dissected from E18.5 embryos (Figure S4A and S4B) via Western blot. Consistent with our histological analysis (Figs. 1c and 3a and S3A), cleaved caspase-8 was markedly reduced in cell extracts from the colons and thymi (Fig. 4a and S4C). In the skin, where lack of TRADD did not provide significant protection, there was a modest reduction in levels of cleaved caspase-8 when compared to Ripk1−/− mice (Fig. 4b). Unexpectedly, there was a clear decrease in the levels of cleaved caspase-3 within the skin lysates of Ripk1−/−Tradd−/− mice (Fig. 4b). The epidermal skin phenotype in Ripk1-/- mice is RIPK3-MLKL mediated , thus the heightened levels of cleaved caspases in the skin lysates of Ripk1−/− nenonates is likely representative of cleaved caspases within the dermis. Levels of RIPK3 and MLKL were increased in the colons of Ripk1−/− mice compared with wild type mice, and there were only slight differences in the total levels of RIPK3 and MLKL in Ripk1−/−Tradd−/− tissues (Fig. 4a, b). These differences did not correlate with the levels of the inflammatory DAMP IL-33, which appeared unchanged in the colons and clearly reduced in the skin and thymi lysates of Ripk1−/−Tradd−/− animals. It has been previously demonstrated that in Ripk1−/− embryos the levels of TRAF2 and cIAP1 are decreased in response to exogenous TNF . The levels of cIAP1 and TRAF2 were, however, unchanged in unstimulated tissues dissected across all genotypes. We could not reliably detect cFLIP within the colons of our E18.5 embryos; however, we did observe what appeared to be a small fragment of cFLIP, in the skin that occurred exclusively in genotypes where Ripk1 was deleted, which correlated with a reduction in cFLIPL but which appeared unchanged in Ripk1−/−Tradd−/− animals (Fig. 4b).
Caspase-8 activation in Ripk1 −/− neonates is driven via a TRADD–FADD complex
The reduction in cleaved caspase-8 in Ripk1−/−Tradd−/− animals suggests that TRADD contributes to the activation of caspase-8 in Ripk1 deficient mice. Despite similarities with Ripk1−/−Tnfr1−/− animals, Ripk1−/−Tradd−/− mice also display distinct phenotypic differences. To determine whether TRADD can indeed directly interact with a FADD-caspase-8 containing complex in the absence of RIPK1, we employed the proximity ligation assay (PLA). This is an immunofluorescent-based technique that enables the detection of in situ protein–protein interaction by proximity, i.e., in a complex. This technique can be utilized to detect protein–protein interaction in fixed samples such as tissue sections, and we have previously utilized PLA to detect the formation of complex-IIb in MEFs . Our data clearly demonstrates that TRADD and FADD are able to interact in multiple organs from Ripk1−/− animals at E18.5 (Fig. 5a, b). As FADD is the molecular bridge between TRADD (via death domain interactions) and caspase-8 (via death effector domain interactions), it is conceivable that the TRADD–FADD complex that we observed in Ripk1−/− mice is also in a complex with caspase-8. Consistent with TRADD executing caspase-8 activation outside of TNFR1, Ripk1−/−Tnfr1−/− mice displayed only a slight reduction in the TRADD–FADD complex in both liver and lung sections of E18.5 neonates (Fig. 5a). The colon, thymus and skin of Ripk1−/− mice also have considerable TRADD–FADD complex formation, which, unlike the liver and lung, is dependent on TNFR1, as this complex is absent in these tissues in Ripk1−/−Tnfr1−/− mice (Fig. 5b). We next assayed Ripk1−/−Myd88−/− animals to determine if the TNFR1-independent TRADD/FADD complex was Myd88 driven. We observed a clear reduction in TRADD/FADD complex in the lungs of Ripk1−/−Myd88−/− animals, however, unexpectedly we observed an increase in TRADD/FADD complex in the liver of Ripk1−/−Myd88−/− animals (Figure S5A).
RIPK3 deletion rescues the prenatal lethality of Ripk1 −/− Tradd −/− animals
Given the similarity in phenotypes observed between our Ripk1−/−Tradd−/− neonates and the published Ripk1−/−Casp8−/− neonates [6,7,8] we reasoned that deletion of Ripk3 may provide a survival advantage to Ripk1−/−Tradd−/− animals comparable to the protection seen in Ripk1−/−Tradd−/−Ripk3−/− mice. We, therefore, generated Ripk1−/−Tradd−/−Ripk3−/− mice and observed a significant, albeit incomplete, extension of lifespan compared to Ripk1−/−Tradd−/− mice. Ripk1−/−Tradd−/−Ripk3−/− mice survive between 22 and 49 days (Fig. 6a), are runty compared to littermate controls (Fig. 6b, c), have splenomegaly (Fig. 6d) and have no detectable payers patches (Fig. 6e). Histological analysis of Ripk1−/−Tradd−/−Ripk3−/− mice revealed disordered splenic architecture, however, in a panel of other tissues we observed no obvious histopathology (Fig. 6f). Of note, during the generation of our Ripk1−/−Tradd−/−Ripk3−/− mouse line our mouse facility identified Pasteurella infections in a number of mouse cages. Although the mice shown in this paper did not appear to exhibit macroscopic signs of Pasteurella infection we wish to highlight that this infection was confirmed present in our mouse room during the generation of the Ripk1−/−Tradd−/−Ripk3−/− mice and we suspect it may be present in the colony itself which could conceivably contribute to animal mortality.
RIPK1 is a pro-survival molecule that plays a central role in maintaining tissue homeostasis during embryogenesis by preventing both apoptosis and necroptosis [6,7,8]. RIPK1 inhibits necroptosis and systemic inflammation by limiting the formation of a RIPK3-DAI RHIM mediated complex [18, 19]. The involvement of RIPK1 in chronic intestinal inflammation has also placed RIPK1 as a central inhibitor of FADD-caspase-8 driven apoptosis , however, the molecule responsible for unleashing this cell death modality in vivo has remained elusive. Here we show that RIPK1 limits the activation of TRADD/FADD-mediated caspase-8 activity and RIPK3 activity to maintain tissue homeostasis and ensure proper embryonic development (Fig. 6g). Ripk1−/−Tradd−/− neonates are fully rescued from the disrupted intestinal phenotype, thymic phenotype and anemia, and display reduced caspase cleavage in a broad range of tissues, when compared with Ripk1−/− embryos. Ripk1−/−Tradd−/− animals present with reduced systemic cell death and inflammation, however, they still die perinatally. Ripk1−/−Tradd−/−Ripk3−/− mice on the other hand survive weaning, however, we noted mortality between 22–49 days indicating that Ripk1−/−Tradd−/−Ripk3−/− mice are not comparable to Ripk1-/-Casp8-/-Ripk3-/- mice. Ripk1−/−Tradd−/−Ripk3−/− animals present with similar survival advantages to Ripk1−/−Tnfr1−/−Ripk3−/− animals; however, unlike Ripk1−/−Tnfr1−/−Ripk3−/− mice , Ripk1−/−Tradd−/−Ripk3−/− mice have largely normal colonic structure via H&E staining. These genetic crosses strongly suggest that caspase-8 can be activated in some tissues independently of TNFR1 and also TRADD in Ripk1-/- mice and that this contributes to the premature mortality observed in Ripk1−/−Tnfr1−/−Ripk3−/− and Ripk1−/−Tradd−/−Ripk3−/− mice. This is consistent with our observation that caspase-8 and caspase-3 are still cleaved in the skin of Ripk1−/−Tradd−/− and Ripk1−/−Tnfr1−/−mice. Consistent with previous reports , Ripk1−/−Tnfr1−/− animals had reduced multi-organ pathologies and in many ways phenocopied Ripk1−/−Tradd−/− mice. However, unlike Ripk1−/−Tnfr1−/− animals, Ripk1−/−Tradd−/− mice were no longer anemic; a Myd88-RIPK3 dependent phenotype that occurs independently of caspase-8 . We observed that co-deletion of Ripk1 and Tradd was sufficient to rescue the reticulocyte defect, resulting in comparative reticulocyte numbers in Ripk1−/−Tradd−/− neonates to their wild-type counterparts. This is suggestive of a restoration of bone marrow function in these animals, and that TRADD-mediated signaling is responsible for the reduction in reticulocytes in Ripk1−/− mice. Tnfr1 deletion was also sufficient to restore the reticulocyte numbers to normal, but was insufficient to rescue the anemia, suggesting that TRADD has essential roles outside of TNFR1 signaling which are involved in driving anemia in Ripk1−/− animals. Given the requirement of Myd88 and RIPK3 to drive anemia in Ripk1−/− animals, our data also potentially places TRADD within a Myd88-RIPK3 pathway in neonates, likely downstream of pattern recognition receptor-dependent processes, which are activated upon sterile inflammation and in which TRADD has described roles [29, 30, 35, 36]. In line with this, the levels of RIPK3, MLKL and the necroptotic DAMP IL-33 were altered in a TRADD dependent fashion in whole tissue from E18.5 neonates. The fact that Tradd or Tnfr1 deletion phenocopy at the level of the reticulocyte defect suggests that an initial TNFR1-TRADD signal is initiated in Ripk1−/− mice, likely at the level of the hematopoietic progenitors, resulting in a decrease in reticulocyte production. Consistently, bone marrow taken from Vav-iCre Ripk1fl/fl mice had a reduced propensity to form colonies when stimulated with TNF or Interferons ex vivo .
cFLIP is an important inhibitor of caspase-8 whose role in vivo is complex and still incompletely understood. Knockout of cFLIP in mice (Cflar−/−) results in embryonic lethality at E10.5 , which is rescued upon co-deletion of Ripk3 and Fadd and delayed upon deletion of Tnfr1 [6, 38]. Conditional deletion of Cflar in intestinal epithelial cells results in TNFR1 driven perinatal lethality (P2) due to uncontrolled apoptosis . Notably, cFLIP levels in whole intestinal lysates from Ripk1−/− neonates (P0) are unchanged, whereas cFLIP levels within skin lysates from Ripk1−/− neonates (P0) are strongly up-regulated . This is in contrast to our data, which shows that cFLIPL levels in the skin of Ripk1−/− neonates are decreased and which coincides with the appearance of a smaller cFLIP fragment occurring specifically in Ripk1−/− animals. We currently do not understand the nature or the purpose of this smaller cFLIP fragment and we conclude that this is likely a cleaved product of cFLIP or a splice variant that occurs specifically in Ripk1−/− neonates. We also do not yet fully understand the discrepancy between our results and the previously published data on cFLIP levels. A possible explanation is that our embryos were harvested at E18.5; a full day earlier than previous studies . This 1 day developmental window may alter the expression and regulation of cFLIP within neonates and would provide a plausible explanation for the difference in cFLIP levels.
Genetic evidence suggests that following RIPK1 deletion, RIPK1-independent necroptotic cell death is a source of DAMPs and causes sterile embryonic inflammation . Caspase-8 is not directly linked to the production of DAMPs as Ripk1−/−Casp8−/− mice are not protected from inflammation . It was therefore surprising that the necroptotic DAMP IL-33 was reduced in Ripk1−/−Tradd−/− neonates in both the skin and thymus, but not the colon. This indicates that TRADD-mediated signaling is required for the upregulation of inflammatory markers, such as IL-33, or that TRADD may directly alter the activities of RIPK3 and/or MLKL in a tissue specific manner. Unexpectedly, IL-33 was up-regulated in the colons of Tradd knockout mice, suggesting that TRADD may have an undescribed homeostatic function to prevent cell damage and DAMP release within the colon. Notably, we were unable to detect any changes in the phosphorylation status of MLKL in our tissue blots (data not shown) and, therefore, cannot reliably make any conclusions on the activation status of MLKL when Tradd is deleted.
While the evidence that TRADD can activate caspase-8 in cellular systems is clear [36, 41], there is no evidence for this role of TRADD in vivo. A recent report has shown that loss of the NF-kappa-B essential modulator (NEMO) specifically within liver parenchymal cells (NEMOLPC-KO) also induces the formation of complex-IIb, resulting in RIPK1 kinase-induced hepatocyte apoptosis and hepatocellular carcinoma. NEMOLPC-KORIPK1LPC-KO mice still develop hepatocellular carcinoma and this can only be prevented by deletion of TRADD . Differently, our data conclusively show that during embryogenesis RIPK1 prevents the interaction of TRADD with FADD thereby limiting aberrant activation of caspase-8. This event is partly driven via TNFR1, however, residual interaction in the liver and lung of Ripk1−/−Tnfr1−/− mice suggests that cytosolic TRADD can still be recruited to FADD-caspase-8 independently of TNFR1. Consistent with this hypothesis, loss of Myd88-/- was sufficient to prevent the TRADD/FADD complex in the lung of Ripk1−/− mice, however; conversely Myd88 loss increased the TRADD/FADD complex in Ripk1−/− livers. This not only suggests a direct involvement of TRADD in the activation of caspase-8, and consequent systemic cell death and inflammation, but also confirms a TNFR1-independent contribution of TRADD to these pathophysiologies, and potentially demonstrates a role for Myd88 in limiting TRADD/FADD complex in the liver.
Our results demonstrate that RIPK1 has an important homeostatic function to limit the interaction of TRADD with FADD-caspase-8 in the developing embryo and prevent apoptotic-mediated pathophysiologies. The mechanisms leading to the recruitment of TRADD to a caspase-8 containing complex are still unclear. It is unlikely that the RHIM domain of RIPK1 is involved in inhibiting TRADD as mutation of the endogenous mouse RIPK1 RHIM domain caused RIPK3 dependent perinatal lethality [18, 19]. It is also unlikely that the TRAF2-cIAP1-RIPK1 axis is required to limit TRADD recruitment to caspase-8 as both TRAF2 and cIAP1 levels remained unchanged in tissues where TRADD was responsible for the observed pathologies. Although speculative, it is plausible that RIPK1 merely has higher affinities for FADD compared to TRADD, and that TRADD can only fully reveal its function when the primary interacting molecule RIPK1, is removed.
All mice were backcrossed to C57BL/6J mice for >10 generations or generated on a C57BL/6J background. Mice were obtained by cesarean section at E18.5. Pregnant mice were prepared for cesarean delivery by progesterone injection at E17.5. The relevant Animal Ethics Committee approved all experiments.
Histology and Immunofluorescence
Embryos were fixed in 10% neutral buffered formalin, paraffin embedded, and sectioned for routine histology staining (H&E). For skin immunofluorescence, paraffin sections were dewaxed, subjected to heat-induced epitope retrieval with citrate buffer then blocked and permeabilized with 1% BSA and 0.3% Triton X-100. IHC sections were stained with anti-CC3 (Cell Signaling Technology, 9661) or anti-Ki67 (Thermo Fisher Scientific, MA5–14520) and labeled polymer-HRP anti-rabbit secondary (Agilent Technologies K4011), or anti-CD45 (BD Pharmingen, BD553076) and goat anti-rat biotinylated secondary (Vector Laboratories, BA-9400). IF sections were stained with anti-Keratin6 (Biolegend, 905701) or anti-Keratin14 (Biolegend, 905304) and goat anti-rabbit alexa-594 (Invitrogen, A-11012) or anti-CD11b conjugated to alexa 488 (Novus Biologicals, NB110-89474AF488). Samples were cover slipped using fluoromount with DAPI (ebioscience, 00-4959-52) enabling visualization of nuclei. Images were taken using a DP72 microscope and cellSens Standard software (Olympus).
Cytokine bioplex assay
The levels of 23 analytes were measured in mouse serum and protein lysate from E18.5 dorsal skin lysed in DISC lysis buffer, using a commercially available Bio-Plex Pro 23 Plex mouse Cytokine, Chemokine and Growth Factor Assay (Bio-Rad Laboratories Ltd, Hercules, CA, USA) on the Bio-Plex 200 System. Initial data analysis was undertaken using Bio-Plex Manager 5.0 Software to determine concentrations. Serially diluted standards (40 μl) and test serum, diluted 1 in 4 in sample diluent (40 μl) and protein lysate (500 μg/40 μl) was added to a plate containing magnetic antibody-coupled beads for each of the 23 analytes. The samples were incubated at room temperature on a plate shaker at 300 r.p.m. for 30 min. Following washing with the Bio Plex Washing buffer, the secondary antibodies (25 μl) were added to the plate and incubated as before. The plate was washed again and streptavidin-PE (50 μl) was added and the plate incubated at room temperature on a plate shaker at 300 r.p.m. for 10 min. Assay buffer (125 μl) was added to each well of the plate before being analyzed on the Bio-Plex 200 machine. Fluorescent intensities obtained for the test samples were read from the standard curve to give pg/ml values for each of the 23 analytes. Values below or above the reference range were assigned the value of the lowest or highest standard respectively.
Organ lysates were made by homogenizing colon or dorsal skin from E18.5 mice in ice-cold DISC lysis buffer containing complete protease inhibitor cocktail (Roche) and PhosSTOP (Roche), using a Tissue lyser 85300 (Qiagen). Lysates were clarified by centrifugation and supernatants were quantified with a BCA assay (Thermo Scientific). Supernatants were boiled with SDS reducing sample buffer. 3 μl of plasma was diluted with 15 μl of 5 × SDS reducing buffer and boiled. Organ lysates (30 μg of protein) and plasma (3 μl) were run on 4–12% Bis-Tris gels (Invitrogen). Nitrocellulose (Plasma samples) or PVDF (all other samples) were probed with: CC3 or −8 (Cell Signaling Technology 9661 and 8592, respectively), pro-caspase-8 (in house), IL33 (R&D Systems AF3626), MLKL ([clone 3H1] described in Murphy et al. 2013), RIPK1 (BD Transduction 610458), RIPK3 (Axxora PSC-2283-c100), cIAP1 (Enzo [clone 1E1-1-10] ALX-803-335-C100), TRAF2 (Santa Cruz sc-876), TRADD (Santa Cruz [H-278] sc-7868), cFLIP (Cell Signaling 8510), or β−actin (Santa Cruz [I-19] sc-1616) antibodies.
Automated cell counts were performed on blood collected from E18.5 embryos into tubes containing EDTA (Sarstedt) using an ADVIA 2120 hematological analyzer (Siemens). Blood smears were generated from 5 to 10 μl of blood, fixed with 100% methanol and stained with May-Grunwald Giemsa before microscopic examination. Images were acquired using a Nikon Eclipse E600 microscope, ×4/1.3 NA or ×100/1.3 NA oil objective with AxioCam Hrc and AxioVision 3.1 image acquisition software.
Embryos were fixed in 10% neutral buffered formalin, paraffin embedded, and sectioned for routine histology. Paraffin sections were dewaxed, subjected to heat-induced epitope retrieval with citrate buffer then blocked and permeabilized with IFF buffer and 0.5% Triton X-100. Sections were then stained with anti-TRADD (Santa Cruz, sc-7868) and anti-FADD (Santa Cruz, sc-6036) overnight at 4 °C. Primary antibodies were washed 3 × with 1 × PBS, 0.1 % Triton X-100 for 10 mins. Proximity ligation assay was then performed as detailed by the manufacturer protocol with some alterations as follows. Secondary probes were left on the slides for 90 min. Washes were performed in the humidity chamber at 37 °C. Ligation was performed for 40 min and amplification for 120 min. Slides were then stained with anti-phalloidin-633 and DAPI (Invitrogen) for 1 h. Slides were then washed 3 × with PBS 0.1% Triton X-100 for 10 min and 1 × H2O. Slides were mounted with prolong gold antifade (Invitrogen) and images were acquired using the LSM719 Zeiss microscope, objective ×20. Images were acquired by sequential scanning.
Unless otherwise specified, data are presented as mean + 1 SEM. Comparisons were performed using an unpaired non-parametric Mann Whitney test.
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We thank Pascal Meier for his support and acknowledge that the idea underlying this study was presented and discussed during a Meier lab retreat, we thank the staff in the WEHI Bioservices facility and Histology Department. We thank Michelle Kelliher for the Ripk1−/−mice, Heinrich Korner for the Tnfr1−/− mice and Tak W. Mak for the Tradd−/− mice . This work was supported by National Health and Medical Research Project grants (1081272, 1046984, 1057888, 1101405, 1060179), fellowships to J.E.V. (1052598) and J.S 1107149, Independent Research Institutes Infrastructure Support Scheme Grant (9000220), a Victorian State Government Operational Infrastructure Support Grant and an Australian Government Research Training Program Scholarship and NHMRC scholarship to H.A (1093637). G.L. was supported by the ICR Dean Award and by Breast Cancer Now.
Phenotypic analysis was performed by HA, RF, and JAR. Mouse crosses were established by JS, RF, JAR, and HA. Genotyping was performed by CH. Histological and immunohistological analysis was performed by HA, RF, GL, and DS. Western blot analysis was performed by RF. PLA (Duolink) was performed by GL. EBS performed all Bioplex assays. A.P.N and L.D.R performed blood smears and polychromatic cell counts. JEV and JS provided reagents and advice and assisted in the interpretation of experiments. RF and GL conceived and coordinated the project, interpreted results, and wrote the manuscript.
Conflict of interest
The authors declare that they have no conflict of interest.
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Anderton, H., Bandala-Sanchez, E., Simpson, D.S. et al. RIPK1 prevents TRADD-driven, but TNFR1 independent, apoptosis during development. Cell Death Differ 26, 877–889 (2019) doi:10.1038/s41418-018-0166-8
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