Fig. 3 | The ISME Journal

Fig. 3

From: The Green Revolution shaped the population structure of the rice pathogen Xanthomonas oryzae pv. oryzae

Fig. 3

Positive selection and recombination patterns of Xanthomonas oryzae pv. oryzae (Xoo) genomes collected in the Philippines. The left panel represents a maximum-likelihood reconstruction using core genome alignment. The phylogenetic tree was extracted from Fig. 2a. Population PX-A1, PX-A2, PX-A3, PX-B1, PX-B2, and PX-C1 were predicted from BAPS cluster analysis [32]. The bottom right panel shows the predicted recombination events (black lines) in the genome of each strain using a 10 kb window. The top right panel depicts the frequency of codons under positive selection per lineage. Positive selection and recombination events are mapped to the PXO99A genome

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