Abstract
In response to oncogenic signals, Alternative Splicing (AS) regulators such as SR and hnRNP proteins show altered expression levels, subnuclear distribution and/or post-translational modification status, but the link between signals and these changes remains unknown. Here, we report that a cytosolic scaffold protein, IQGAP1, performs this task in response to heat-induced signals. We show that in gastric cancer cells, a nuclear pool of IQGAP1 acts as a tethering module for a group of spliceosome components, including hnRNPM, a splicing factor critical for the response of the spliceosome to heat-shock. IQGAP1 controls hnRNPM’s sumoylation, subnuclear localisation and the relevant response of the AS machinery to heat-induced stress. Genome-wide analyses reveal that IQGAP1 and hnRNPM co-regulate the AS of a cell cycle-related RNA regulon in gastric cancer cells, thus favouring the accelerated proliferation phenotype of gastric cancer cells. Overall, we reveal a missing link between stress signals and AS regulation.
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Acknowledgements
We thank N. Boni-Kazantzidou and G.-R. Manikas for the generation of crucial preliminary data; P. Hantzis, M. Fousteri, V. Koliaraki (IFBR, B.S.R.C. “Al. Fleming”) and N. Balatsos (University of Thessaly, Greece) for cell lines and reagents; D. Black and A. Damianov (UCLA, USA) for plasmids and technical advice on minigene reporter splicing assays; A. Guialis (N.H.R.F., Athens, Greece) for antibodies and reagents; Per Haberkant and the EMBL Proteomics Core Facility for LC-MS/MS analyses and advice; Sofia Grammenoudi and the Flow cytometry facility of B.S.R.C. “Al. Fleming” for help with cell cycle analyses and discussions; Vladimir Benes, Jonathan Landry and the EMBL Genecore for RNA-seq analyses and discussions; Martina Samiotaki, George Stamatakis at the Proteomics Facility of B.S.R.C. “Al. Fleming” for LC-MS/MS analyses and discussions; the personnel of the Imaging facility of B.S.R.C. “Al. Fleming” for help with image acquisition. We also thank George Panayotou and Efthimios Skoulakis (B.S.R.C. “Al. Fleming”) for critical reading of the manuscript; Juan Valcarcel for help with the analysis of the RNA-seq data; Skarlatos G. Dedos (National and Kapodistrian University of Athens, Greece) for reagents, plasmids, discussions and critical reading of the manuscript.
Funding
InfrafrontierGR/Phenotypos Infrastructure, co-funded by Greece and the European Union (European Regional Development Fund) [NSRF 2014–2020, MIS 5002135]; Hellenic Foundation for Research & Innovation (HFRI) and the General Secretariat for Research and Technology (GSRT) [grant agreement 846 to ZE]; MR was supported by the European Research Council [ERC AdvG 670146]; European Commission Grant FP7-PEOPLE-2010-IEF [274837] to PK; Stavros Niarchos Foundation (SNF) donation to BSRC “Al. Fleming”.
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These authors contributed equally: Andrada-Maria Birladeanu, Malgorzata Rogalska, Myrto Potiri. AMB performed most of the immunofluorescence, subcellular fractionation, immunostaining and in vitro splicing experiments. M.R. performed all the statistical and bioinformatics analyses. MP performed the cellular assays (cell cycle, wound healing, colony formation, MTT assays) and CRISPR-Cas9 editing experiments. Z.E performed RT-PCR analyses and supervised AMB in in vitro splicing assays and MP in cell cycle analyses. VP performed immunofluorescence analyses, western blotting analyses, advised AMB. on image acquisition and analyses, supervised M.P. on cellular assays. MA and PK performed the xenograft experiments. DLK advised MA and helped with the cellular assays. JDL helped with the CRISPR-Cas9 editing experiments. PK conceived, designed and supervised the study, performed the immunoprecipitation experiments and wrote the manuscript. All authors edited and commented on the manuscript.
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Birladeanu, AM., Rogalska, M., Potiri, M. et al. The scaffold protein IQGAP1 links heat-induced stress signals to alternative splicing regulation in gastric cancer cells. Oncogene 40, 5518–5532 (2021). https://doi.org/10.1038/s41388-021-01963-7
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DOI: https://doi.org/10.1038/s41388-021-01963-7
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