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Brain aging in major depressive disorder: results from the ENIGMA major depressive disorder working group


Major depressive disorder (MDD) is associated with an increased risk of brain atrophy, aging-related diseases, and mortality. We examined potential advanced brain aging in adult MDD patients, and whether this process is associated with clinical characteristics in a large multicenter international dataset. We performed a mega-analysis by pooling brain measures derived from T1-weighted MRI scans from 19 samples worldwide. Healthy brain aging was estimated by predicting chronological age (18–75 years) from 7 subcortical volumes, 34 cortical thickness and 34 surface area, lateral ventricles and total intracranial volume measures separately in 952 male and 1236 female controls from the ENIGMA MDD working group. The learned model coefficients were applied to 927 male controls and 986 depressed males, and 1199 female controls and 1689 depressed females to obtain independent unbiased brain-based age predictions. The difference between predicted “brain age” and chronological age was calculated to indicate brain-predicted age difference (brain-PAD). On average, MDD patients showed a higher brain-PAD of +1.08 (SE 0.22) years (Cohen’s d = 0.14, 95% CI: 0.08–0.20) compared with controls. However, this difference did not seem to be driven by specific clinical characteristics (recurrent status, remission status, antidepressant medication use, age of onset, or symptom severity). This highly powered collaborative effort showed subtle patterns of age-related structural brain abnormalities in MDD. Substantial within-group variance and overlap between groups were observed. Longitudinal studies of MDD and somatic health outcomes are needed to further assess the clinical value of these brain-PAD estimates.


Major depressive disorder (MDD) is associated with an increased risk of cognitive decline [1], metabolic dysregulation [2], and cellular aging [3, 4], indicating that the burden of MDD goes beyond mental ill-health and functional impairment, and extends to poor somatic health [5], and age-related diseases [6]. Moreover, MDD increases the risk of mortality [7], and not only through death by suicide [8]. Simultaneously, depression and aging have been linked to poor quality of life and increased costs for society and healthcare [9]. This underscores the importance of identifying brain aging patterns in MDD patients to determine whether and how they deviate from healthy patterns of aging.

Current multivariate pattern methods can predict chronological age from biological data (see Jylhava et al. [10] for a review) with high accuracy. Similarly, chronological age can be predicted from brain images, resulting in an estimate known as “brain age” [11]. Importantly, by calculating the difference between a person’s estimated brain age and their chronological age, one can translate a complex aging pattern across the brain into a single outcome: brain-predicted age difference (brain-PAD). A positive brain-PAD represents having an “older” brain than expected for a person of their chronological age, whereas a negative brain-PAD signals a “younger” brain than expected at the given chronological age. Higher brain-PAD scores have been associated with greater cognitive impairment, increased morbidity, and exposure to cumulative negative fateful life events [11, 12]. For a review summarizing brain age studies from the past decade, see Franke and Gaser [13].

Prior studies from the Enhancing NeuroImaging Genetics through Meta-analysis (ENIGMA)-MDD consortium with sample sizes over 9000 participants have shown subtle reductions in subcortical structure volumes in major depression that were robustly detected across many samples worldwide. Specifically, smaller hippocampal volumes were found in individuals with earlier age of onset and recurrent episode status [14]. In addition, different patterns of cortical alterations were found in adolescents vs. adults with MDD, suggesting that MDD may affect brain morphology (or vice versa) in a way that depends on the developmental stage of the individual [15]. Thus, subtle structural brain abnormalities have been identified in MDD. However, whether a diagnosis of MDD is associated with the multivariate metric of brain aging in a large dataset, and which clinical characteristics further impact this metric, remains elusive.

Accumulating evidence from studies suggests that, at the group level, MDD patients follow advanced aging trajectories, as their functional (e.g., walking speed, handgrip strength) [16] and biological state (e.g. telomeres, epigenetics, mitochondria) [17,18,19,20] reflects what is normally expected at an older age (i.e., biological age “outpaces” chronological age) [21]. It is important to examine whether biological aging findings in depression can be confirmed in a large heterogeneous dataset consisting of many independent samples worldwide, based on commonly derived gray matter measures. Only a handful of studies have investigated brain-PAD in people with psychiatric disorders, showing older brain-PAD in schizophrenia (SCZ), borderline personality disorder, and first-episode and at-risk mental state for psychosis, yet findings were less consistent in bipolar disorder (BD) (for an overview, see Cole et al. [22]).

Only three studies to date specifically investigated machine-learning-based brain aging in MDD—using relatively small samples of <211 patients, with inconsistent findings of a brain-PAD of +4.0 years vs. no significant differences [23,24,25]. The current study is the first to examine brain aging in over 6900 individuals from the ENIGMA MDD consortium (19 cohorts, 8 countries worldwide), covering almost the entire adult lifespan (18–75 years). Our additional aim was to build a new multisite brain age model based on FreeSurfer regions of interest (ROIs) that generalizes well to independent data to promote brain age model deployability and shareability. We hypothesized higher brain-PAD in MDD patients compared with controls. We also conducted exploratory analyses to investigate whether higher brain-PAD in MDD patients was associated with demographics (age, sex) and clinical characteristics such as disease recurrence, antidepressant use, remission status, depression severity, and age of onset of depression.



Nineteen cohorts from the ENIGMA MDD working group with data from MDD patients and controls (18–75 years of age) participated in this study. MDD was ascertained using the clinician-rated the 17-item Hamilton Depression Rating Scale (HDRS-17) in one cohort and diagnostic interviews in all other cohorts. Details regarding demographics, clinical characteristics, and exclusion criteria for each cohort may be found in Supplementary Tables S13. Because the literature suggests differential brain developmental trajectories by sex [26], we estimated brain age models separately for males and females. Sites with less than ten healthy controls were excluded from the training dataset and subsequent analyses (for exclusions see Supplementary Material). In total, we included data from N = 6989 participants, including N = 4314 controls (N = 1879 males; N = 2435 females) and N = 2675 individuals with MDD (N = 986 males; N = 1689 females). All sites obtained approval from the appropriate local institutional review boards and ethics committees, and all study participants or their parents/guardians provided written informed consent.

Training and test samples

To maximize the variation of chronological age distribution and scanning sites in the training samples, and to maximize the statistical power and sample size of patients for subsequent statistical analyses, we created balanced data splits within scanning sites preserving the chronological age distribution, Fig. 1a. The full motivation to our data partition approach can be found in the Supplementary Material. Structural brain measures from 952 males obtained from 16 scanners and 1236 female controls obtained from 22 scanners were included in the training samples. The top panel in Fig. 1b shows the age distribution in the training sample. A hold-out dataset comprised of controls served as a test sample to validate the accuracy of the brain age prediction model; 927 male and 1199 female controls from the same scanning sites were included. Likewise, 986 male and 1689 female MDD patients from the corresponding scanning sites were included in the MDD test sample. The two bottom panels in Fig. 1b show the age distributions across the test samples.

Fig. 1: Data partition approach.

a Schematic illustration of features used and data partition into training and test samples, separately for males and females. A full list of features can be found in the Supplementary Material. b Data from control groups (blue) were partitioned into balanced 50:50 splits within each scanning site following random sampling but preserving the overall chronological age distribution. Major depressive disorder (MDD) groups are shown in red. The top panel illustrates the male (left) and female (right) training samples. The middle and bottom panels show the male (controls: mean [SD] in years, 43.1 [15.3]; MDD: 42.8 [13.1]) and female test samples (controls: 39.4 [15.7]; MDD: 43.2 [14.0]). ICV intracranial volume.

Image processing and analysis

Structural T1-weighted scans of each subject were acquired at each site. To promote data sharing and to maximize the efficiency of pooling existing datasets, we used standardized protocols to facilitate harmonized image analysis and feature extraction (N = 153) across multiple sites ( Cortical parcellations were based on the Desikan/Killiany atlas [27]. Briefly, the fully automated and validated segmentation software FreeSurfer was used to segment 14 subcortical gray matter regions (nucleus accumbens, amygdala, caudate, hippocampus, pallidum, putamen, and thalamus), 2 lateral ventricles, 68 cortical thickness, and 68 surface area measures, and total intracranial volume (ICV). Segmentations were visually inspected and statistically examined for outliers. Further details on cohort type, image acquisition parameters, software descriptions, and quality control may be found in Supplementary Table S4. Individual level structural brain measures and clinical and demographic measures from each cohort were pooled at a central site to perform the mega-analysis.

FreeSurfer brain age prediction model

To estimate the normative brain age models, we combined the FreeSurfer measures from the left and right hemispheres by calculating the mean ((left + right)/2) of volumes for subcortical regions and lateral ventricles, and thickness and surface area for cortical regions, resulting in 77 features (Supplementary Table S5). Using a mega-analytic approach, we first estimated normative models of the association between the 77 average structural brain measures and age in the training sample of controls (separately for males and females) using ridge regression, from the Python-based sklearn package [28]. All brain measures were combined as predictors in a single multivariate model. To assess model performance, we performed tenfold cross-validation. To quantify model performance, we calculated the mean absolute error (MAE) between predicted brain age and chronological age. The literature suggests nonuniform age-related changes for cortical thickness, surface area, and subcortical volumes [29], which is further supported by empirical evidence showing that brain morphology is under control of distinct genetic and developmental pathways [30,31,32,33]. We therefore included all three feature modalities in our brain age prediction framework. Of note, we also tested whether reducing feature space by including only single modalities (only cortical thickness vs. cortical surface area vs. subcortical volume features) would improve model fit, but this resulted in poorer performance accuracy than combining all 77 features. Moreover, we also (1) estimated a model including left and right hemisphere features separately, (2) compared the ridge regression with other machine-learning methods, and (3) regressed features on ICV instead of including ICV as a separate feature, none of which resulted in significantly superior prediction accuracy (the results are provided in Supplementary Table S6).

Model validation

Model performance was further validated in the test sample of controls. The parameters learned from the trained model in controls were applied to the test sample of controls and to the MDD test samples to obtain brain-based age estimates. To assess model performance in these test samples, we calculated (1) MAE, (2) Pearson correlation coefficients between predicted brain age and chronological age, and (3) the proportion of the variance explained by the model (R2). To evaluate generalizability to completely independent test samples (acquired on completely independent scanning sites), we applied the training model parameters to control subjects (males, N = 610; females, N = 720) from the ENIGMA BD working group.

Statistical analyses

All statistical analyses were conducted in the test samples only. Brain-PAD (predicted brain-based age—chronological age) was calculated for each individual and used as the outcome variable. While different prediction models were built for males and females, the generated brain-PAD estimates were pooled for statistical analyses.

Each dependent measure of the ith individual at jth scanning site was modeled as follows:

  1. (1)

    Brain-PADij = intercept + β1(Dx) + β2(sex) + β3(age) + β4(age2) + β5(Dx × age) + β6(Dx × sex) + β7(age × sex) + β8(Dx × age × sex) + Uj + εij

  2. (2)

    Brain-PADij = intercept + β1(Dx) + β2(sex) + β3(age) + β4(age2) + β5(Dx × age) + β6(Dx × sex) + Uj + εij

  3. (3)

    Brain-PADij = intercept + β1(Dx) + β2(sex) + β3(age) + β4(age2) + Uj + εij

Intercept, Dx (MDD diagnosis), sex, and all age effects were fixed. The term Uj and εij are normally distributed and represent the random intercept attributed to scanning site and the residual error, respectively.

Following Le et al. [34], we posthoc corrected for the residual age effects on the brain-PAD outcome in the test samples by adding age as a covariate to our statistical models. However, we found remaining nonlinear age effects on our brain-PAD outcome [35], and included both linear and quadratic age covariates as it provided significantly better model fit to our data compared with models with a linear age covariate only (χ2(2) = 9.73, p < 0.002). For more details see Supplementary Material.

Within MDD patients, we also used linear mixed models to examine associations of brain-PAD with clinical characteristics, including recurrence status (first vs. recurrent episode), antidepressant use at time of scanning (yes/no), remission status (currently depressed vs. remitted), depression severity at study inclusion ((HDRS-17) and the Beck Depression Inventory (BDI-II)), and age of onset of depression (categorized as: early, <26 years; middle adulthood, >25 and <56 years; and late adulthood onset, >55 years). Analyses were tested two-sided and findings were false discovery rate corrected and considered statistically significant at p < 0.05.

Finally, to gain more insight into the importance of features for making brain age predictions we (1) calculated structure coefficients (i.e., Pearson correlations between predicted brain age and each feature) in the test samples only for illustrative purposes, (2) explored single modality (either subcortical volumes or cortical thickness or cortical surface area features) trained models, and (3) perturbed features (either subcortical volumes or cortical thickness or cortical surface area) by setting their values to zero in the test samples and examining the changes in performance [36].


Brain age prediction performance

Supplementary Fig. S1 and Supplementary Table S7 illustrate the systematic bias in brain age estimation and the correction we applied. Within the training set of controls, under cross-validation, the structural brain measures predicted chronological age with a MAE of 6.32 (SD 5.06) years in males and 6.59 (5.14) years in females. When applying the model parameters to the test samples of controls, the MAE was 6.50 (4.91) and 6.84 (5.32) years for males and females, respectively. Similarly, within the MDD group, the MAE was 6.72 (5.36) and 7.18 (5.40) years for males and females, respectively. Figure 2 shows the correlation between chronological age (y-axis) and predicted brain age (x-axis) [37] in the cross-validation training sample (males r = 0.85, p < 0.001 and females r = 0.854, p < 0.001, both R2 = 0.72), out-of-sample controls (males r = 0.85, p < 0.001; R2 = 0.72 and females r = 0.83, p < 0.001; R2 = 0.69), and MDD test samples (males r = 0.77, p < 0.001; R2 = 0.57 and females r = 0.78, p < 0.001; R2 = 0.59), and the generalization to completely independent healthy control samples of the ENIGMA BD working group (MAE = 7.49 [SD 5.89]; r = 0.71, p < 0.001; R2 = 0.45 for males and MAE = 7.26 [5.63]; r = 0.72, p < 0.001; R2 = 0.48, for females). Prediction errors were also plotted per site and age group for subjects from the ENIGMA MDD (Supplementary Figs. S25) and BD working group (Supplementary Figs. S6 and S7).

Fig. 2: Brain age prediction based on 7 FreeSurfer subcortical volumes, lateral ventricles, 34 cortical thickness and 34 surface area measures, and total intracranial volume.

The plots show the correlation between chronological age and predicted brain age in the tenfold cross-validation of the ridge regression in the control train sample, the out-of-sample validation of the test samples (controls and MDD patients) from the ENIGMA MDD working group, and generalizability to completely independent test samples (controls only) from the ENIGMA BD working group (top to bottom). The colors indicate scanning sites and each circle represents an individual subject. Diagonal dashed line reflects the line of identity (x = y).

Added brain aging in MDD

Uncorrected mean brain-PAD scores were −0.20 (SD 8.44) years in the control and +0.68 years (SD 8.82) in the MDD group. Individuals with MDD showed +1.08 (SE 0.22) years higher brain-PAD than controls (p < 0.0001, Cohen’s d = 0.14, 95% CI: 0.08–0.20) adjusted for age, age2, sex, and scanning site (Fig. 3). In Addition, we found significant main effects for age (b = −0.28, p < 0.0001) and age2 (b = −0.001, p < 0.01). Our analyses revealed no significant three-way interaction between diagnosis by age and by sex, nor significant two-way interactions (diagnosis by age or diagnosis by sex). Of note, since there were no significant interactions with age or age2 and MDD status, and the residual age effects in the brain-PAD estimates did not influence our primary finding. Given that our model showed higher errors in individuals >60 years, we performed a sensitivity analysis by including only participants within the range of 18–60 years age. Here, we found a slightly increased effect of diagnostic group (MDD + 1.16 years [SE 0.24] higher brain-PAD than controls [p < 0.0001, Cohen’s d = 0.15, 95% CI: 0.09–0.21]).

Fig. 3: Case–control differences in brain aging.

Brain-PAD (predicted brain age—chronological age) in patients with major depressive disorder (MDD) and controls. Group level analyses showed that MDD patients exhibited significantly higher brain-PAD than controls (b = 1.08, p < 0.0001), although large within-group variation and between-group overlap are observed as visualized in a the density plot and b the Engelmann–Hecker plot. The brain-PAD estimates are adjusted for chronological age, age2, sex, and scanning site.

The relative importance of thickness features

All features, except the mean lateral ventricle volume, and entorhinal and temporal pole thickness showed a negative correlation with predicted brain age, and are visualized in Fig. 4. Widespread negative correlations with average cortical thickness and surface area were observed, although thickness features resulted in stronger negative correlations (mean Pearson r [SD]: −0.44 [0.21]) than surface area features (−0.17 [0.08]). On average, subcortical volumes were slightly less negatively correlated to predicted brain age as thickness features (−0.34 [0.34]). Single modality models and ICV performed worse than a combined model including all modalities (Supplementary Table S8). Test performance was most negatively affected by the perturbation of thickness features (Supplementary Table S9).

Fig. 4: Structure coefficients of predicted brain age and FreeSurfer features across control and major depressive disorder (MDD) groups.

Bivariate correlations are shown for illustrative purposes and to provide a sense of importance of features in the brain age prediction. The figure shows Pearson correlations between predicted brain age and cortical thickness features (top row), cortical surface areas (middle row), and subcortical volumes (bottom row). The negative correlation with ICV was excluded from this figure for display purposes.

Brain aging and clinical characteristics

Compared with controls, significant brain-PAD differences in years were observed in patients with a remitted disease status (+2.19 years, p < 0.0001, d = 0.18), with a current depression (+1.5 years, p < 0.0001, d = 0.18), in those that were using antidepressant medication at the time of scanning (+1.4 years, p < 0.0001, d = 0.15), medication-free depressed patients (+0.7 years, p = 0.0225, d = 0.07), patients with a late adult-onset of depression (+1.2 years, p = 0.01, d = 0.12), patients with an age of onset of MDD in mid-adulthood (+0.9 years, p = 0.0005, d = 0.11), patients with an early age of onset of depression (<26 years; +1.0 years, p = 0.0004, d = 0.11), first-episode patients (+1.2 years, p = 0.0002, d = 0.13) and recurrent depressed patients (+1.0 years, p = 0.0002, d = 0.11) (Table 1). Importantly, posthoc comparisons between the MDD subgroups did not show any significant differences (i.e., first vs. recurrent episode, antidepressant medication-free vs. antidepressant users, remitted vs. currently depressed patients, or early vs. adult vs. late age of onset of depression). Mean brain-PAD was above zero in all MDD subgroups, indicating that all MDD subgroups were estimated to be older than expected based on the brain age model compared with controls. Finally, there were no significant associations with depression severity or current depressive symptoms (self-reported BDI-II [b = 0.04, p = 0.06] or clinical-based HDRS-17 [b = −0.02, p = 0.48] questionnaires) at the time of scanning within the MDD sample.

Table 1 Clinical characteristics and brain aging (N = 2126 controls).


Using a new parsimonious multisite brain age algorithm based on FreeSurfer ROIs from over 2800 males and 4100 females, we found subtle age-associated gray matter differences in adults with MDD. At the group level, patients had, on average, a +1.08 years greater discrepancy between their predicted and actual age compared with controls. Significantly larger brain-PAD scores were observed in all patient subgroups compared with controls (with Cohen’s d effect sizes ranging from 0.07 to 0.18), indicating that the higher brain-PAD in patients was not driven by specific clinical characteristics (recurrent status, remission status, antidepressant medication use, age of onset, or symptom severity). This study confirms previously observed advanced cellular aging in MDD at the brain level of analysis; however, it is important to mention the large within-group and small between-group variance, demonstrating that many patients did not show advanced brain aging. We were not able to investigate all potential clinical, biological, and other sources that could explain the large within-group variance of brain-PAD in MDD patients. Future studies, ideally with in-depth clinical phenotyping and longitudinal information on mental and somatic health outcomes (e.g., genomic variation, omics profiles, comorbidities, duration of illness, lifestyle, inflammation, oxidative stress, chronic diseases), are required to further evaluate the predictive value of the brain-PAD estimates, potentially by using our publicly available brain age model (

Perhaps surprisingly, we found higher brain-PAD in antidepressant users (+1.4 years depressive disorder) compared with controls and antidepressant-free patients (+0.7 years) and controls, although the difference between patient groups was not significant. Antidepressants are suggested to exert a neuroprotective effect, for example by promoting brain-derived neurotrophic factor (BDNF) [38]. However, patients taking antidepressant medication at the time of scanning likely had a more severe or chronic course of the disorder [14, 15]. Therefore, the larger brain-PAD in antidepressant users may be confounded by severity or course of the disorder. Unfortunately, the cross-sectional nature of the current study and the lack of detailed information on lifetime use, dosage and duration of use of antidepressants, do not allow us to draw any conclusions regarding the direct effects of antidepressants on brain aging. In addition, it remains to be elucidated how adaptable brain-PAD is in response to pharmacotherapy. Randomized controlled intervention studies are needed to develop an understanding of how reversible or modifiable brain aging is in response to pharmacological and nonpharmacological strategies (e.g., psychological, exercise, and/or nutritional interventions), as seen in other biological age indicators [21, 39].

Our brain-PAD difference (+1.1 years) is attenuated in contrast to earlier work showing +4.0 years of brain aging in a smaller sample of MDD patients in a study by Koutsouleris et al. (N = 104) [23]. However, a recent study by Kaufmann et al. found a similar effect size to ours in 211 MDD patients (18–71 years), albeit nonsignificant [25]. Although the MAE of our models (6.6 years in age range of 18–75 years) is higher than in e.g,. the study by Koutsouleris et al. (4.6 years in age range of 18–65 years), a simple calculation shows that, when scaled to covered age range, the studies show comparable MAE (0.11 vs. 0.10, respectively) [40]. As the range of possible predictions (age range) carry a strong bearing on prediction accuracy, increasingly wider ranges of outcomes become more challenging to predict [11]. Several methodological differences may underlie the inconsistencies or differences in magnitude of brain age effects in MDD, including, but not limited to (1) the use of high-dimensional features such as whole-brain gray matter maps in the Koutsouleris et al. study vs. a much lower number of input features (FreeSurfer ROIs) in our study, although the Kaufmann et al. study included multimodal parcellations and found similar brain age effects in MDD as we observed, (2) the composition of training and test data, including number of scanners in both sets, with 5 scanners included in the Koutsouleris et al. study vs. 22 in our study vs. 68 scanners in Kaufmann et al., (3) sample sizes of training and test data (N = 800 in training set and N = 104 in MDD test set in Koutsouleris et al. vs. N > 950 in training set and N > 980 in MDD test set in our current study vs. N > 16k training set and N = 211 in MDD test set in Kaufmann et al.), and (4) heterogeneity of MDD and differences in patient characteristics between the studies. The inconsistencies between brain-PAD findings in MDD might be due to any (combination) of the sources of variation outlined above and precludes a direct comparison of these studies. Unfortunately, a methodological comparison is beyond the scope of our study and beyond our capability given data access limitations within ENIGMA MDD. Nevertheless, the current results are based on the largest MDD sample to date and likely provide more precise estimates regardless of the size of the effect [41, 42].

The current findings in MDD also show lower brain aging than previously observed in SCZ (brain-PAD ranges from +2.6 to +5.5 years) [23, 40], even in the early stages of first-episode SCZ. Inconsistent findings have been reported in BD, with “younger” brain age or no differences compared with controls [11]. While the same sources of variation described above in comparing our findings with previous brain aging findings in MDD also apply here, brain abnormalities might be subtler in MDD compared with BD or SCZ. This is in line with previous ENIGMA studies in SCZ, BD, and MDD, showing the largest effect sizes of structural brain alterations in SCZ [43, 44] (highest Cohen’s d effect size −0.53), followed by BD [45, 46] (highest Cohen’s d −0.32) and MDD (highest Cohen’s d −0.14) [14, 15]. Conceivably more in line with MDD pathology [47], Liang et al. showed significantly higher brain-PAD in posttraumatic stress disorder (PTSD) using similar ridge regression and bias correction methods to the current paper [48]. This is consistent with similar effect sizes of structural alterations of individual brain regions observed across MDD and PTSD in large scale studies (highest Cohen’s d −0.17) [49].

Inflammation may be a common biological mechanism between MDD and brain aging [50]. Neuroimmune mechanisms (e.g., proinflammatory cytokines) influence biological processes (e.g. synaptic plasticity), and inflammatory biomarkers are commonly dysregulated in depression [51]. One study showed that brain-PAD was temporarily reduced by 1.1 years due to the probable acute anti-inflammatory effects of ibuprofen, albeit in healthy controls [52]. In MDD, both cerebrospinal fluid and peripheral blood interleukin (IL)-6 levels are elevated [53]. Moreover, work by Kakeda et al. demonstrated a significant inverse relationship between IL-6 levels and surface-based cortical thickness and hippocampal subfields in medication-free, first-episode MDD patients [54]. This accords with the current study that increased brain-PAD was also observed in first-episode patients compared with controls, perhaps suggesting that neuroimmune mechanisms may be chief candidates involved in the brain morphology alterations, even in the early stage of illness. Further, the age-related structural alterations in MDD may also be explained by shared underlying (epi)genetic mechanisms involved in brain development and plasticity (thereby influencing brain structure) and psychiatric illness. For instance, Aberg et al. showed that a significant portion of the genes represented in overlapping blood–brain methylome-wide association findings for MDD was important for brain development, such as induction of synaptic plasticity by BDNF [55].

In terms of individual FreeSurfer measures that contributed most to the brain age prediction, we particularly found widespread negative correlations between predicted brain age and average cortical thickness and subcortical volume, and comparably weaker correlations with surface area features (Fig. 4). We visualized these associations separately for controls and MDD patients, but findings were similar and suggest comparable structure coefficients in both groups (Supplementary Fig. S8). Notably, we did not include a spatial weight map of our brain age model, as the weights (although linear) are obtained from a multivariable model, and do not allow for a straightforward interpretation of the importance of the brain regions contributing to the aging pattern. Instead, exploratory analyses pointed out that our model relied most on the cortical thickness features in order to make good predictions. This is consistent with existing literature that supports the importance and sensitivity of cortical thickness towards aging, different from surface areas [56]. However, models including the largest feature set demonstrated the best performance (Supplementary Tables S810).

Limitations and future directions

While our results are generally consistent with the existing literature on advanced or premature biological aging and major depression using other biological indicators, we also have to acknowledge some limitations. First, limited information was available on clinical characterization due to the lack of harmonization of data collection across participating cohorts. However, we provided all participating sites with their brain-PAD estimates, and encourage them to characterize brain-PAD determinants in more detail (e.g., using more in-depth phenotyping or examining associations with longitudinal outcomes). Second, we did not have access to raw individual level data and future studies could include higher-dimensional gray matter features or additional modalities such as white matter volumes, hyperintensities, and/or microstructure, or functional imaging data to examine whether model fit can be improved. However, we must also appreciate a pragmatic approach for collating data from such a large number of scanning sites. Here, we developed a parsimonious model based on FreeSurfer features collected with standardized ENIGMA extraction scripts to promote model sharing. While pooling harmonized data from many sites increases (clinical) heterogeneity, it also makes predictive models less susceptible to overfitting and more generalizable to other populations [57], even though this might have come at the cost of lower accuracy [58]. Finally, the large within-group variance regarding the brain-PAD outcome in both controls and MDD (Fig. 3), compared with the small between-group variance, renders the use of this brain aging indicator for discriminating patients and controls at the individual level difficult. As many of the MDD patients do not show advanced brain aging compared with controls, the clinical significance of the observed higher brain-PAD in MDD patients may be limited. Aberrant brain aging is not specific to MDD [11, 13, 22, 25], and it remains to be elucidated whether age-related brain atrophy is a consequence or cause of MDD. While currently brain age certainly would not constitute a viable biomarker for the diagnosis of depression based on our findings, it could potentially be used to identify those MDD patients at greater risk of poorer brain- or general health outcomes, given previous associations of older-appearing brains relating to cognitive decline, dementia, and death [59,60,61,62]. Future longitudinal studies examining the association between brain-PAD and mental, neurological, or general health outcomes specifically in individuals with MDD are required to determine whether brain-PAD could provide a clinically useful biomarker.


In conclusion, compared with controls, both male and female MDD patients show advanced brain aging of around 1 year. This significant but subtle sign of advanced aging is consistent with other studies of biological aging indicators in MDD at cellular and molecular levels of analysis (i.e., telomere length and epigenetic age). The deviation of brain metrics from normative aging trajectories in MDD may contribute to increased risk for mortality and aging-related diseases commonly seen in MDD. However, the substantial within-group variance and overlap between groups signify that more (longitudinal) work including in-depth clinical characterization and more precise biological age predictor systems are needed to elucidate whether brain age indicators can be clinically useful in MDD. Nevertheless, our work contributes to the maturation of brain age models in terms of generalizability, deployability, and shareability, in pursuance of a canonical brain age algorithm. Other research groups with other available information on longitudinal mental and somatic health outcomes, other aging indicators, and incidence and/or prevalence of chronic diseases may use our model to promote the continued growth of knowledge in pursuit of useful clinical applications.


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ENIGMA MDD: This work was supported by NIH grants U54 EB020403 and R01MH116147. BiDirect-Münster: The study was supported by a grant from the German Federal Ministry of Education and Research (BMBF; grant FKZ-01ER0816 and FKZ-01ER1506). Calgary: This study was supported by the Alberta Children’s Hospital Foundation. liNG (Heidelberg): This work was partially supported by the Deutsche Forschungsgemeinschaft (DFG) via grants to OG (GR1950/5-1 and GR1950/10-1). CODE: The CODE cohort was collected from studies funded by Lundbeck and the German Research Foundation (WA 1539/4-1, SCHN 1205/3-1, SCHR443/11-1). DIP-Groningen: This study was supported by the Gratama Foundation, the Netherlands (2012/35 to NAG) Dublin: The study was funded by Science Foundation Ireland, with a Stokes Professorship Grant to TF. Edinburgh: The research leading to these results was supported by IMAGEMEND, which received funding from the European Community’s Seventh Framework Programme (FP7/2007-2013) under grant agreement no. 602450. This paper reflects only the author’s views and the European Union is not liable for any use that may be made of the information contained therein. This work was also supported by a Wellcome Trust Strategic Award 104036/Z/14/Z. FOR2107—Marburg: This work was funded by the German Research Foundation (DFG, grant FOR2107 KR 3822/7-2 to AK; FOR2107 KI 588/14-2 to TK and FOR2107 JA 1890/7-2 to AJ). Leiden: EPISCA was supported by GGZ Rivierduinen and the LUMC. Melbourne: This study was funded by National Health and Medical Research Council of Australia (NHMRC) Project Grants 1064643 (Principal Investigator BJH) and 1024570 (Principal Investigator CGD). Minnesota: The study was funded by the National Institute of Mental Health (K23MH090421), the National Alliance for Research on Schizophrenia and Depression, the University of Minnesota Graduate School, the Minnesota Medical Foundation, and the Biotechnology Research Center (P41 RR008079 to the Center for Magnetic Resonance Research), University of Minnesota, and the Deborah E. Powell Center for Women’s Health Seed Grant, University of Minnesota. This work was carried out in part using computing resources at the University of Minnesota Supercomputing Institute. Münster: This work was funded by the German Research Foundation (DFG, grant FOR2107 DA1151/5-1 and DA1151/5-2 to UD; SFB-TRR58, Projects C09 and Z02 to UD) and the Interdisciplinary Center for Clinical Research (IZKF) of the medical faculty of Münster (grant Dan3/012/17 to UD). Novosibirsk: This work was supported by Russian Science Foundation (RSF grant 16-15-00128) to LA. SHIP: The Study of Health in Pomerania (SHIP) is part of the Community Medicine Research net (CMR) ( of the University Medicine Greifswald, which is supported by the German Federal State of Mecklenburg—West Pomerania. MRI scans in SHIP and SHIP-TREND have been supported by a joint grant from Siemens Healthineers, Erlangen, Germany and the Federal State of Mecklenburg-West Pomerania. This study was further supported by the EU-JPND Funding for BRIDGET (FKZ:01ED1615). Stanford: This work was supported by NIH grant R37 MH101495. Sydney: This study was supported by the following National Health and Medical Research Council funding sources: Programme Grant (no. 566529), Centres of Clinical Research Excellence Grant (no. 264611), Australia Fellowship (no. 511921), and Clinical Research Fellowship (no. 402864). The QTIM dataset was supported by the Australian National Health and Medical Research Council (Project Grants No. 496682 and 1009064) and US National Institute of Child Health and Human Development (RO1HD050735). GBF was supported by the funding agencies FAPESP and CNPq, Brazil. CRKC was supported by NIH grants U54 EB020403, RF1 AG041915, RF1AG051710, P41EB015922, R01MH116147, and R56AG058854. JHC was funded by a UKRI Innovation Fellowship. BC-D was supported by a NHMRC CJ Martin Fellowship (APP1161356). CHYF was supported in part by MRC grant, NIHR BRC grant. BRG was supported by the Medical Research Council. LKMH was supported by the Endeavour Leadership Award by the Australian Government Department of Education, Skills and Employment (DESE). TCH was supported by the National Institute of Health (K01MH117442). NJ was supported by NIH grants R01 MH117601, R01 AG059874, U54 EB020403, RF1 AG041915, RF1AG051710, P41EB015922, R01MH116147, and R56AG058854. AFM was supported by the Dutch Organization of Scientific Research under a Vernieuwingsimpuls ‘VIDI’ Fellowship (grant number 016.156.415) SEM was supported by an Australian National Health and Medical Research Council Senior Research Fellowship (APP1103623). MJP was funded by Ministerio de Ciencia e Innovación of Spanish Government (ISCIII) through a “Miguel Servet II” (CP16/00020). PGS reports funding by the German Research Foundation (DFG, SA 1358/2-1) and the Max Planck Institute of Psychiatry, Munich. LS was supported by a NHMRC Career Development Fellowship (1140764). JCS was supported by the Pat Rutherford Chair in Psychiatry, UTHealth. PMT was supported in part by NIH grants U54 EB020403, RF1 AG041915, RF1AG051710, P41EB015922, R01MH116147, and R56AG058854. SIT was supported in part by NIH grants U54 EB020403, RF1 AG041915, RF1AG051710, P41EB015922, R01MH116147, and R56AG058854. TTY was supported in part for this study by NCCIH R61AT009864, the National Center for Advancing Translational Sciences, National Institutes of Health, through UCSF-CTSI Grant Number UL1TR001872, the American Foundation for Suicide Prevention (AFSP), NIMH R01MH085734, NCCIH R21AT009173, UCSF Research Evaluation and Allocation Committee (REAC) and J. Jacobson Fund, and the Brain and Behavior Research Foundation (formerly NARSAD). Amsterdam DIADE: The DIADE study was funded by ZonMW OOG 2007, the Netherlands (#100002034). Cardiff: The Cardiff dataset was supported through a 2010 NARSAD Young Investigator Award (ref: 17319) to XC. CIAM Cape Town: This work was supported by the University Research Council of the University of Cape Town and the National Research Foundation of South Africa. FIDMAG Barcelona: This work was supported by the Generalitat de Catalunya (2014 SGR 1573) and Instituto de Salud Carlos III (CPII16/00018) and (PI14/01151 and PI14/01148). Galway: This work was supported by the Health Research Board, Ireland and the Irish Research Council. Grenoble: This work was supported by research grants from Grenoble University Hospital. Halifax: This work was supported by the Canadian Institutes of Health Research (142255). MOODINFLAME Groningen: This study was funded by EU-FP7-HEALTH-222963 “MOODINFLAME” and EU-FP7-PEOPLE- 286334 “PSYCHAID.” Oslo: Funded by the South-Eastern Norway Regional Health Authority (2014097) and a research grant from Mrs. Throne-Holst. Paris: This work was supported by the FRM (Fondation pour la recherche Biomédicale) “Bio-informatique pour la biologie” 2014 grant. Singapore: Funded by Singapore Bioimaging Consortium Research Grant (SBIC RP C-009/2006) and NHG grant (SIG/15012). UNSW: Australian NHMRC Program Grant 1037196 and Project Grants 1063960 and 1066177; and the Janette Mary O’Neil Research Fellowship to JMF. VA San Diego Healthcare/University of California San Diego: This study was supported by R01MH083968, Desert-Pacific Mental Illness Research Education and Clinical Center, and the US National Science Foundation (Science Gateways Community Institutes; XSEDE). Sweden: Funding for the Swedish St. Göran collection was provided by by grants from the Swedish Research Council (2018-02653), the Swedish foundation for Strategic Research (KF10-0039), the Swedish Brain foundation, and the Swedish Federal Government under the LUA/ALF agreement (ALF 20170019, ALFGBG-716801). OAA was funded by the Research Council of Norway (223273, 248778, 273291), NIH (ENIGMA grants). CMB thanks the PERIS grant contract by Departament de Salut CERCA Programme/Generalitat de Catalunya SLT002/16/00331. JMG thanks the support of CIBERSAM and the Comissionat per a Universitats i Recerca del DIUE de la Generalitat de Catalunya to the Bipolar Disorders Group (2017 SGR 1365) and the project SLT006/17/00357, from PERIS 2016-2020 (Departament de Salut). CERCA Programme/Generalitat de Catalunya. TH was supported by the Canadian Institutes of Health Research (103703, 106469), German Research Foundation (DFG grants HA7070/2-2, HA7070/3, HA7070/4), Nova Scotia Health Research Foundation, Dalhousie Clinical Research Scholarship, Brain & Behavior Research Foundation (formerly NARSAD) 2007 Young Investigator and 2015 Independent Investigator Awards. ML was funded by the Swedish state under the ALF-agreement (ALF 20170019, ALFGBG-716801) and the Swedish Research Council (2018-02653). JR thanks the Miguel Servet contract by the Spanish Ministerio de Ciencia, Innovacion y Universidades. JS was supported by the National Institute of General Medical Sciences (P20GM121312) and the National Institute of Mental Health (R21MH113871). MHS was supported by the funding agencies CAPES, Brazil. DJS was supported by the SAMRC. GMT’s work was supported by the National Institutes of Health, Grant T35 AG026757/AG/NIA and the University of California San Diego, Stein Institute for Research on Aging. EV thanks the support of the Spanish Ministry of Science, Innovation and Universities (PI15/00283) integrated into the Plan Nacional de I+D+I y cofinanciado por el ISCIII-Subdirección General de Evaluación y el Fondo Europeo de Desarrollo Regional (FEDER); CIBERSAM; and the Comissionat per a Universitats i Recerca del DIUE de la Generalitat de Catalunya to the Bipolar Disorders Group (2017 SGR 1365) and the project SLT006/17/00357, from PERIS 2016-2020 (Departament de Salut). CERCA Programme/Generalitat de Catalunya. MVZ was supported by FAPESP, Brazil (grant no. 2013/03905-4). Tim Hahn: was supported by the German Research Foundation (DFG grants HA7070/2-2, HA7070/3, HA7070/4). RK was supported by the National Institute of General Medical Sciences (P20GM121312). CRKC was supported by NIA T32AG058507; NIH/NIMH 5T32MH073526; NIH grant U54EB020403 from the Big Data to Knowledge (BD2K) Program.

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LA, MA, AA, BTB, KB, IB, GBF, AC, CRKC, JHC, CGC, BC-D, KC, UD, CGD, DD, RD, FLSD, VE, LTE, EF, SF, TF, CHYF, BRG, IHG, NAG, DG, OG, TH, GBH, LKMH, BJH, SNH, MH, TCH, NH, NJ, AJ, CK, TK, BK-D, BK, AK, JL, RL, FPM, GM, AFM, AM, KLM, SEM, PBM, BAM, BM, EO, MJP, EP, LR, JR, PGPR, MDS, PGS, LS, AS, ES, JS, DJS, OS, LTS, SIT, M-JvT, IMV, RRJMV, HW, NJAvdW, SJAvdW, HW, NRW, KW, MJW, M-JW, DJV, HV, TTY, VZ, GIdZ, GBZ-S, CA, MA, OAA, EB, CMB, EJC-R, DC, XC, TMC-A, PF, SFF, JMF, JMG, BCMH, TH, CH, JH, FMH, MI, RK, BL, RM-V, UFM, CM, PBM, LN, MCGO, BJO, MP, EP-C, JR, MMR, GR, HGR, RS, SS, TDS, JS, AHS, PRS, MHS, KS, MGS-d-S, ANS, HST, GMT, AU, DHW, MVZ: these authors received the following funding; however, all unrelated to the current manuscript: BRG has received a (nonrelated) travel grant from Janssen UK. HJG has received travel grants and speakers’ honoraria from Servier, Fresenius Medical Care and Janssen Cilag. He has received research funding from the German Research Foundation (DFG), the German Ministry of Education and Research (BMBF), the DAMP Foundation, Fresenius Medical Care, the EU “Joint Programme Neurodegenerative Disorders (JPND) and the European Social Fund (ESF)”. IBH was an inaugural Commissioner on Australia’s National Mental Health Commission (2012-2018). He is the Co-Director, Health and Policy at the Brain and Mind Centre (BMC) University of Sydney. The BMC operates an early-intervention youth services at Camperdown under contract to headspace. IBH has previously led community-based and pharmaceutical industry-supported (Wyeth, Eli Lily, Servier, Pfizer, AstraZeneca) projects focused on the identification and better management of anxiety and depression. He was a member of the Medical Advisory Panel for Medibank Private until October 2017, a Board Member of Psychosis Australia Trust and a member of Veterans Mental Health Clinical Reference group. He is the Chief Scientific Advisor to, and an equity shareholder in, Innowell. Innowell has been formed by the University of Sydney and PwC to deliver the $30 million Australian Government-funded “Project Synergy.” Project Synergy is a 3-year program for the transformation of mental health services through the use of innovative technologies. BWJHP has received (nonrelated) research funding from Boehringer Ingelheim and Jansen Research. KS has consulted for Roche Pharmaceuticals and Servier Pharmaceuticals. JCS has received research support from BMS, Forest, Merck, Elan, Johnson & Johnson and COMPASS in the form of grants and clinical trials. He is a member of the speakers’ bureaus for Pfizer, Abbott and Sonify and he is a consultant for Astellas. TE has served as a speaker for Lundbeck. ML declares that, over the past 36 months, he has received lecture honoraria from Lundbeck pharmaceutical. No other equity ownership, profit-sharing agreements, royalties, or patent. PMT has received (nonrelated) research funding from Biogen, Inc. (Boston). EV has received grants and served as consultant, advisor or CME speaker for the following entities: AB-Biotics, Abbott, Allergan, Angelini, AstraZeneca, Bristol-Myers Squibb, Dainippon Sumitomo Pharma, Farmindustria, Ferrer, Forest Research Institute, Gedeon Richter, Glaxo-Smith-Kline, Janssen, Lundbeck, Otsuka, Pfizer, Roche, SAGE, Sanofi-Aventis, Servier, Shire, Sunovion, and Takeda. Supplementary information is available at MP’s website. CRKC has received (nonrelated) research funding from Biogen, Inc. (Boston).

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Han, L.K.M., Dinga, R., Hahn, T. et al. Brain aging in major depressive disorder: results from the ENIGMA major depressive disorder working group. Mol Psychiatry (2020).

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