Abstract
Stresses such as hypoxia, nutrient deprivation and acidification disturb protein folding in the endoplasmic reticulum (ER) and activate the Unfolded Protein Response (UPR) to trigger adaptive responses through the effectors, PERK, IRE1 and ATF6. Most of these responses relate to ER homoeostasis; however, here we show that the PERK branch of the UPR also controls DNA replication. Treatment of cells with the non-genotoxic UPR agonist thapsigargin led to a rapid inhibition of DNA synthesis that was attributable to a combination of DNA replication fork slowing and reduced replication origin firing. DNA synthesis inhibition was dependent on the UPR effector PERK and was associated with phosphorylation of the checkpoint adaptor protein Claspin and activation of the Chk1 effector kinase, both of which occurred in the absence of detectable DNA damage. Remarkably, thapsigargin did not inhibit bulk DNA synthesis or activate Chk1 in cells depleted of Claspin, or when Chk1 was depleted or subject to chemical inhibition. In each case thapsigargin-resistant DNA synthesis was due to an increase in replication origin firing that compensated for reduced fork progression. Taken together, our results unveil a new aspect of PERK function and previously unknown roles for Claspin and Chk1 as negative regulators of DNA replication in the absence of genotoxic stress. Because tumour cells proliferate in suboptimal environments, and frequently show evidence of UPR activation, this pathway could modulate the response to DNA replication-targeted chemotherapies.
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References
Hanahan D, Weinberg RA . Hallmarks of cancer: the next generation. Cell 2011; 144: 646–674.
Malhotra JD, Kaufman RJ . The endoplasmic reticulum and the unfolded protein response. Semin Cell Dev Biol 2007; 18: 716–731.
Wang S, Kaufman RJ . The impact of the unfolded protein response on human disease. J Cell Biol 2012; 197: 857–867.
Pytel D, Majsterek I, Diehl JA . Tumor progression and the different faces of the PERK kinase. Oncogene 2015; 35: 1207–1215.
Wang M, Kaufman RJ . The impact of the endoplasmic reticulum protein-folding environment on cancer development. Nat Rev Cancer 2014; 14: 581–597.
Maly DJ, Papa FR . Druggable sensors of the unfolded protein response. Nat Chem Biol 2014; 10: 892–901.
Smith J, Tho LM, Xu N, Gillespie DA . The ATM-Chk2 and ATR-Chk1 pathways in DNA damage signaling and cancer. Adv Cancer Res 2010; 108: 73–112.
Smits VA, Gillespie DA . DNA damage control: regulation and functions of checkpoint kinase 1. FEBS J 2015; 282: 3681–3692.
Garrett MD, Collins I . Anticancer therapy with checkpoint inhibitors: what, where and when? Trends Pharmacol Sci 2011; 32: 308–316.
Petermann E, Maya-Mendoza A, Zachos G, Gillespie DA, Jackson DA, Caldecott KW . Chk1 requirement for high global rates of replication fork progression during normal vertebrate S phase. Mol Cell Biol 2006; 26: 3319–3326.
Petermann E, Helleday T, Caldecott KW . Claspin promotes normal replication fork rates in human cells. Mol Biol Cell 2008; 19: 2373–2378.
Maya-Mendoza A, Petermann E, Gillespie DA, Caldecott KW, Jackson DA . Chk1 regulates the density of active replication origins during the vertebrate S phase. EMBO J 2007; 26: 2719–2731.
Scorah J, McGowan CH . Claspin and Chk1 regulate replication fork stability by different mechanisms. Cell Cycle 2009; 8: 1036–1043.
Harding HP, Novoa I, Zhang Y, Zeng H, Wek R, Schapira M et al. Regulated translation initiation controls stress-induced gene expression in mammalian cells. Mol Cell 2000; 6: 1099–1108.
Kaufman RJ . Stress signaling from the lumen of the endoplasmic reticulum: coordination of gene transcriptional and translational controls. Genes Dev 1999; 13: 1211–1233.
Harding HP, Zhang Y, Bertolotti A, Zeng H, Ron D . Perk is essential for translational regulation and cell survival during the unfolded protein response. Mol Cell 2000; 5: 897–904.
Brewer JW, Diehl JA . PERK mediates cell-cycle exit during the mammalian unfolded protein response. Proc Natl Acad Sci USA 2000; 97: 12625–12630.
Techer H, Koundrioukoff S, Azar D, Wilhelm T, Carignon S, Brison O et al. Replication dynamics: biases and robustness of DNA fiber analysis. J Mol Biol 2013; 425: 4845–4855.
Kumagai A, Dunphy WG . Claspin, a novel protein required for the activation of Chk1 during a DNA replication checkpoint response in Xenopus egg extracts. Mol Cell 2000; 6: 839–849.
Wu S, Hu Y, Wang JL, Chatterjee M, Shi Y, Kaufman RJ . Ultraviolet light inhibits translation through activation of the unfolded protein response kinase PERK in the lumen of the endoplasmic reticulum. J Biol Chem 2002; 277: 18077–18083.
Sidrauski C, Tsai JC, Kampmann M, Hearn BR, Vedantham P, Jaishankar P et al. Pharmacological dimerization and activation of the exchange factor eIF2B antagonizes the integrated stress response. eLife 2015; 4: e07314.
Hetz C . The unfolded protein response: controlling cell fate decisions under ER stress and beyond. Nat Rev Mol Cell Biol 2012; 13: 89–102.
Malzer E, Daly ML, Moloney A, Sendall TJ, Thomas SE, Ryder E et al. Impaired tissue growth is mediated by checkpoint kinase 1 (CHK1) in the integrated stress response. J Cell Sci 2010; 123: 2892–2900.
Mejlvang J, Feng Y, Alabert C, Neelsen KJ, Jasencakova Z, Zhao X et al. New histone supply regulates replication fork speed and PCNA unloading. J Cell Biol 2014; 204: 29–43.
Mann MJ, Pereira ER, Liao N, Hendershot LM . UPR-induced resistance to etoposide is downstream of PERK and independent of changes in topoisomerase IIalpha levels. PLoS One 2012; 7: e47931.
Palam LR, Gore J, Craven KE, Wilson JL, Korc M . Integrated stress response is critical for gemcitabine resistance in pancreatic ductal adenocarcinoma. Cell Death Dis 2015; 6: e1913.
Martin Y, Cabrera E, Amoedo H, Hernandez-Perez S, Dominguez-Kelly R, Freire R . USP29 controls the stability of checkpoint adaptor Claspin by deubiquitination. Oncogene 2015; 34: 1058–1063.
Semple JI, Smits VA, Fernaud JR, Mamely I, Freire R . Cleavage and degradation of Claspin during apoptosis by caspases and the proteasome. Cell Death Differ 2007; 14: 1433–1442.
Anglana M, Apiou F, Bensimon A, Debatisse M . Dynamics of DNA replication in mammalian somatic cells: nucleotide pool modulates origin choice and interorigin spacing. Cell 2003; 114: 385–394.
Bianco JN, Poli J, Saksouk J, Bacal J, Silva MJ, Yoshida K et al. Analysis of DNA replication profiles in budding yeast and mammalian cells using DNA combing. Methods 2012; 57: 149–157.
Labit H, Goldar A, Guilbaud G, Douarche C, Hyrien O, Marheineke K . A simple and optimized method of producing silanized surfaces for FISH and replication mapping on combed DNA fibres. BioTechniques 2008; 45: 649–652, 654, 656-648.
Acknowledgements
This work was supported by grants from the Spanish Ministry of Economy and Competitiveness (SAF2013-49149-R, BFU2014-51672-REDC to RF) and Fundacion CajaCanarias (AP2015/008 to RF), the IMBRAIN Project (FP7-REGPOT-2012-CT2012-31637-IMBRAIN to DAG) funded by EU FP7 and Gobierno de Canarias, and World Wide Cancer Research (WWCR; Project grant no. 12-0149 to DAG).
Author contributions
EC, SH, SK, MD, DK and MS performed experiments and data analysis. EC, SH, RF and DAG designed experiments and prepared the manuscript.
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Cabrera, E., Hernández-Pérez, S., Koundrioukoff, S. et al. PERK inhibits DNA replication during the Unfolded Protein Response via Claspin and Chk1. Oncogene 36, 678–686 (2017). https://doi.org/10.1038/onc.2016.239
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DOI: https://doi.org/10.1038/onc.2016.239
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