Skip to main content

Thank you for visiting nature.com. You are using a browser version with limited support for CSS. To obtain the best experience, we recommend you use a more up to date browser (or turn off compatibility mode in Internet Explorer). In the meantime, to ensure continued support, we are displaying the site without styles and JavaScript.

  • Original Article
  • Published:

Pdcd4 directly binds the coding region of c-myb mRNA and suppresses its translation

Abstract

Pdcd4 is a novel tumor suppressor protein that functions in the nucleus and the cytoplasm, and appears to be involved in the regulation of transcription and translation. In the cytoplasm, Pdcd4 has been implicated in the suppression of translation of mRNAs containing structured 5′-untranslated regions; however, the mechanisms that recruit Pdcd4 to specific target mRNAs and the identities of these mRNAs are mostly unknown. In this study, we have identified c-myb mRNA as the first natural translational target mRNA of Pdcd4. We have found that translational suppression of c-myb mRNA by Pdcd4 is dependent on sequences located within the c-myb-coding region. Furthermore, we have found that the N-terminal domain of Pdcd4 has an important role in targeting Pdcd4 to c-myb RNA by mediating preferential RNA binding to the Pdcd4-responsive region of c-myb mRNA. Overall, our work demonstrates for the first time that Pdcd4 is directly involved in translational suppression of a natural mRNA and provides the first evidence for a key role of the RNA-binding domain in targeting Pdcd4 to a specific mRNA.

This is a preview of subscription content, access via your institution

Access options

Buy this article

Prices may be subject to local taxes which are calculated during checkout

Figure 1
Figure 2
Figure 3
Figure 4
Figure 5
Figure 6

Similar content being viewed by others

References

  • Afonja O, Juste D, Das S, Matsuhashi S, Samuels HH . (2004). Induction of PDCD4 tumor suppressor gene expression by RAR agonists, antiestrogen and HER-2/neu antagonist in breast cancer cells. Evidence for a role in apoptosis. Oncogene 23: 8135–8145.

    Article  CAS  Google Scholar 

  • Asangani IA, Rasheed SA, Nikolova DA, Leupold JH, Colburn NH, Post S et al. (2008). MicroRNA-21 (miR-21) post-transcriptionally downregulates tumor suppressor Pdcd4 and stimulates invasion, intravasation and metastasis in colorectal cancer. Oncogene 27: 2128–2136.

    Article  CAS  Google Scholar 

  • Appl H, Klempnauer K-H . (2002). Targeted disruption of c-myb in the chicken pre B-cell line DT40. Oncogene 21: 3076–3081.

    Article  CAS  Google Scholar 

  • Bitomsky N, Böhm M, Klempnauer K-H . (2004). Transformation suppressor protein Pdcd4 interferes with JNK-mediated phosphorylation of c-Jun and recruitment of the coactivator p300 by c-Jun. Oncogene 23: 7484–7493.

    Article  CAS  Google Scholar 

  • Bitomsky N, Wethkamp N, Marikkannu R, Klempnauer K-H . (2008). siRNA-mediated knock-down of Pdcd4 expression causes up-regulation of p21(Waf1/Cip1) expression. Oncogene 27: 4820–4829.

    Article  CAS  Google Scholar 

  • Böhm M, Sawicka K, Siebrasse JP, Brehmer-Fastnacht A, Peters R, Klempnauer K-H . (2003). The transformation suppressor protein Pdcd4 shuttles between nucleus and cytoplasm and binds RNA. Oncogene 22: 4905–4910.

    Article  Google Scholar 

  • Chang JH, Cho YH, Sohn SY, Choi JM, Kim A, Kim YC et al. (2009). Crystal structure of the eIF4A-PDCD4 complex. Proc Natl Acad Sci USA 106: 3148–3153.

    Article  CAS  Google Scholar 

  • Chen Y, Knosel T, Kristiansen G, Pietas A, Garber ME, Matsuhashi S et al. (2003). Loss of PDCD4 expression in human lung cancer correlates with tumour progression and prognosis. J Pathol 200: 640–646.

    Article  CAS  Google Scholar 

  • Cmarik JL, Min H, Hegamyer G, Zhan S, Kulesz-Martin M, Yoshinaga H et al. (1999). Differentially expressed protein Pdcd4 inhibits tumor promoter-induced neoplastic transformation. Proc Natl Acad Sci USA 96: 14037–14042.

    Article  CAS  Google Scholar 

  • Dorello NV, Peschiamoli A, Guardavaccaro D, Colburn NH, Sherman NE, Pagano M . (2006). S6K1- and betaTRCP-mediated degradation of PDCD4 promotes protein translation and cell growth. Science 314: 467–471.

    Article  Google Scholar 

  • Ercikan-Abali EA, Banerjee D, Waltham MC, Skacel N, Scotto KW, Bertino JR . (1997). Dihydrofolate reductase protein inhibits its own translation by binding to dihydrofolate reductase mRNA sequences within the coding region. Biochemistry 36: 12317–12322.

    Article  CAS  Google Scholar 

  • Evan GI, Lewis GK, Bishop JM . (1984). Isolation of monoclonal antibodies specic for products of avian oncogene myb. Mol Cell Biol 4: 2843–2850.

    Article  CAS  Google Scholar 

  • Foos G, Grimm S, Klempnauer K-H . (1992). Functional antagonism between members of the myb family: B-myb inhibits v-myb induced gene activation. EMBO J 11: 4619–4629.

    Article  CAS  Google Scholar 

  • Hafner M, Landthaler M, Burger L, Khorshid M, Hausser J, Berninger P et al. (2010). Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP. Cell 141: 129–141.

    Article  CAS  Google Scholar 

  • Hogan DJ, Riordan DP, Gerber AP, Herschlag D, Brown PO . (2008). Diverse RNA-binding proteins interact with functionally related sets of RNAs, suggesting an extensive regulatory system. PLos Biol 6: e255.

    Article  Google Scholar 

  • Lancaster AM, Jan E, Sarnow P . (2006). Initiation factor-independent translation mediated by the hepatitis C virus internal ribosomal entry site. RNA 12: 894–902.

    Article  CAS  Google Scholar 

  • Lankat-Buttgereit B, Göke R . (2009). The tumor suppressor Pdcd4: recent advances in the elucidation of function and regulation. Biol Cell 101: 309–317.

    Article  CAS  Google Scholar 

  • LaRonde-LeBlanc N, Santhanam AN, Baker AR, Wlodawer A, Colburn NH . (2007). Structural basis for inhibition of translation by the tumor suppressor Pdcd4. Mol Cell Biol 27: 147–156.

    Article  CAS  Google Scholar 

  • Leupold JH, Yang HS, Colburn NH, Asangani I, Post S, Allgayer H . (2007). Tumor suppressor Pdcd4 inhibits invasion/intravasation and regulates urokinase receptor (u-PAR) gene expression via Sp-transcription factors. Oncogene 26: 4550–4562.

    Article  CAS  Google Scholar 

  • Lin X, Parsels LA, Voeller DM, Allegra CJ, Maley GF, Maley F et al. (2000). Characterization of a cis-acting regulatory element in the protein coding region of thymidylate synthase mRNA. Nucleic Acids Res 28: 1381–1389.

    Article  CAS  Google Scholar 

  • Loh PG, Yang HS, Walsh MA, Wang Q, Wang X, Cheng Z et al. (2009). Structural basis for translational inhibition by the tumour suppressor Pdcd4. EMBO J 28: 274–285.

    Article  CAS  Google Scholar 

  • Lu Z, Liu M, Stribinskis V, Klinge CM, Ramos KS, Colburn NH . (2008). MicroRNA-21 promotes cell transformation by targeting the programmed cell death 4 gene. Oncogene 27: 4373–4379.

    Article  CAS  Google Scholar 

  • Mink S, Kerber U, Klempnauer K-H . (1996). Interaction of C/EBPβ and v-Myb is required for synergistic activation of the mim-1 gene. Mol Cell Biol 16: 1316–1325.

    Article  CAS  Google Scholar 

  • Mudduluru G, Medved F, Grobholz R, Jost C, Gruber A, Leupold JH et al. (2007). Loss of programmed cell death 4 expression marks adenoma-carcinoma transition, correlates inversely with phosphorylated protein kinase B, and is an independent prognostic factor in resected colorectal cancer. Cancer 110: 1697–1707.

    Article  CAS  Google Scholar 

  • Nottrott S, Simard MJ, Richter JD . (2006). Human let-7a miRNA blocks protein production on actively translating polyribosomes. Nat Struct Mol Biol 13: 1108–1114.

    Article  CAS  Google Scholar 

  • Petersen CP, Bordeleau M-E, Pelletier J, Sharp PA . (2006). Short RNAs repress translation after initiation in mammalian cells. Mol Cell 21: 533–542.

    Article  CAS  Google Scholar 

  • Plachetka A, Chayka O, Wilczek C, Melnik S, Bonifer C, Klempnauer K-H . (2008). C/EBPβ induces chromatin opening at a cell-type-specific enhancer. Mol Cell Biol 28: 2102–2112.

    Article  CAS  Google Scholar 

  • Prechtel AT, Chemnitz J, Schirmer S, Ehlers C, Langbein-Detsch I, Stülke J et al. (2006). Expression of CD83 is regulated by HuR via a novel cis-active coding region element. J Biol Chem 281: 10912–10925.

    Article  CAS  Google Scholar 

  • Ramsay RG, Gonda TJ . (2008). Myb function in normal and cancer cells. Nat Rev Cancer 8: 523–534.

    Article  CAS  Google Scholar 

  • Schlichter U, Burk O, Worpenberg S, Klempnauer K-H . (2001a). The chicken Pdcd4 gene is regulated by v-Myb. Oncogene 20: 231–239.

    Article  CAS  Google Scholar 

  • Schlichter U, Kattmann D, Appl H, Miethe J, Brehmer-Fastnacht A, Klempnauer K-H . (2001b). Identification of the myb-inducible promoter of the chicken Pdcd4 gene. Biochim Biophys Acta 1520: 99–104.

    Article  CAS  Google Scholar 

  • Shibahara K, Asano M, Ishida Y, Aoki T, Koike T, Honjo T. . (1995). Isolation of a novel mouse gene MA-3 that is induced upon programmed cell death. Gene 166: 297–301.

    Article  CAS  Google Scholar 

  • Singh P, Marikkannu R, Bitomsky N, Klempnauer K-H . (2009). Disruption of the Pdcd4 tumor suppressor gene in chicken DT40 cells reveals its role in the DNA-damage response. Oncogene 28: 3758–3764.

    Article  CAS  Google Scholar 

  • Sleeman JP . (1993). Xenopus A-myb is expressed during early spermatogenesis. Oncogene 8: 1931–1941.

    CAS  PubMed  Google Scholar 

  • Suzuki C, Garces RG, Edmonds KA, Hiller S, Hyberts SG, Marintchev A et al. (2008). PDCD4 inhibits translation initiation by binding to eIF4A using both its MA3 domains. Proc Natl Acad Sci USA 105: 3274–3279.

    Article  CAS  Google Scholar 

  • Waters LC, Strong SL, Ferlemann E, Oka O, Muskett FW, Veverka V et al. (2011). Structure of the tandem MA-3 region of Pdcd4 and characterization of its interactions with eIF4A and eIF4G: molecular mechanisms of a tumour suppressor. J Biol Chem 285: 17270–17280.

    Article  Google Scholar 

  • Waters LC, Veverka V, Böhm M, Schmedt T, Choong PT, Muskett FW et al. (2007). Structure of the C-terminal MA-3 domain of the tumour suppressor protein Pdcd4 and characterization of its interaction with eIF4A. Oncogene 26: 4941–4950.

    Article  CAS  Google Scholar 

  • Wedeken L, Ohnheiser J, Hirschi B, Wethkamp N, Klempnauer K-H . (2010). Association of tumor suppressor protein Pdcd4 with ribosomes is mediated by protein-protein and protein-RNA interactions. Genes Cancer 1: 293–301.

    Article  CAS  Google Scholar 

  • Yang HS, Cho MH, Zacowicz H, Hegamyer G, Sonenberg N, Colburn N . (2004). A novel function of the MA-3 domains in transformation and translation suppressor Pdcd4 is essential for its binding to eukaryotic translation initiation factor 4A. Mol Cell Biol 24: 3894–3906.

    Article  CAS  Google Scholar 

  • Yang HS, Jansen AP, Komar AA, Zheng X, Merrick WC, Costes S et al. (2003a). The transformation suppressor Pdcd4 is a novel eukaryotic translation initiation factor 4A binding protein that inhibits translation. Mol Cell Biol 23: 26–37.

    Article  Google Scholar 

  • Yang HS, Knies JL, Stark C, Colburn NH . (2003b). Pdcd4 suppresses tumor phenotype in JB6 cells by inhibiting AP-1 transactivation. Oncogene 22: 3712–3720.

    Article  CAS  Google Scholar 

  • Zhang H, Ozaki I, Mizuta T, Hamajima H, Yasutake T, Eguchi Y et al. (2006). Involvement of programmed cell death 4 in transforming growth factor-beta1-induced apoptosis in human hepatocellular carcinoma. Oncogene 25: 6101–6112.

    Article  CAS  Google Scholar 

  • Zhang Y, Yang S, Liu M, Song C, Wu N, Ling P et al. (2010). Interaction between thymidylate synthase and its cognate mRNA in zebrafish embryos. PLos One 5: e10618.

    Article  Google Scholar 

Download references

Acknowledgements

We thank M Hentze and D Ostareck for providing plasmids. This work was supported by the Deutsche Krebshilfe (10–1716), the Wilhelm-Sander-Stiftung (2004.088.1) and the Wellcome Trust. PS and LW were supported by the Graduate School of Chemistry (GSC-MS) at the University of Münster.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to K-H Klempnauer.

Ethics declarations

Competing interests

The authors declare no conflict of interest.

Additional information

Supplementary Information accompanies the paper on the Oncogene website

Supplementary information

Rights and permissions

Reprints and permissions

About this article

Cite this article

Singh, P., Wedeken, L., Waters, L. et al. Pdcd4 directly binds the coding region of c-myb mRNA and suppresses its translation. Oncogene 30, 4864–4873 (2011). https://doi.org/10.1038/onc.2011.202

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1038/onc.2011.202

Keywords

This article is cited by

Search

Quick links