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How RNA closes a Diel

The first structure of a ribozyme that catalyzes the stereospecific carbon-carbon bond formation between two small molecules shows how an RNA active site can perform the synthetically important Diels-Alder reaction. Surprisingly, the ribozyme active site shares structural features with proteins that catalyze the same reaction.

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Figure 1: The Diels-Alder reaction is a [4+2] cycloaddition of an unsaturated dienophile to a diene.
Figure 2: A view of the active site cleft of the Seelig-Jäschke Diels-Alderase ribozyme showing how the cycloaddition product (van der Waals spheres) buries one of its faces into the catalyst.
Figure 3: Comparison of the active sites of protein and RNA Diels-Alderases.

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Acknowledgements

J.N.P. is supported by the US National Aeronautics and Space Administration Office of Space Science Graduate Student Research Program. A.R.F. is a W.M. Keck Foundation distinguished young scholar in medical research.

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Pitt, J., Ferré-D'Amaré, A. How RNA closes a Diel. Nat Struct Mol Biol 12, 206–208 (2005). https://doi.org/10.1038/nsmb0305-206

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