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Privateer: software for the conformational validation of carbohydrate structures

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Figure 1: N-glycan D-pyranosides in high-energy conformations, as deposited in the PDB (left), and their corrected counterparts (right).

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References

  1. Agirre, J. et al. Nat. Chem. Biol. 11, 303 (2015).

    CAS  Article  Google Scholar 

  2. Lütteke, T. et al. Carbohydr. Res. 339, 1015–1020 (2004).

    Article  Google Scholar 

  3. Lütteke, T. & von der Lieth, C.W. BMC Bioinformatics 5, 69 (2004).

    Article  Google Scholar 

  4. Cremer, D. & Pople, J.A. J. Am. Chem. Soc. 97, 1354–1358 (1975).

    CAS  Article  Google Scholar 

  5. Iglesias-Fernandez, J. et al. Chem. Sci. 6, 1167–1177 (2015).

    CAS  Article  Google Scholar 

  6. Emsley, P. et al. Acta Crystallogr. D Biol. Crystallogr. 66, 486–501 (2010).

    CAS  Article  Google Scholar 

  7. Murshudov, G.N. et al. Acta Crystallogr. D Biol. Crystallogr. 67, 355–367 (2011).

    CAS  Article  Google Scholar 

  8. Joosten, R.P. et al. Bioinformatics 27, 3392–3398 (2011).

    CAS  Article  Google Scholar 

  9. Winn, M.D. et al. Acta Crystallogr. D Biol. Crystallogr. 67, 235–242 (2011).

    CAS  Article  Google Scholar 

  10. Brunger, A.T. Nat. Protoc. 2, 2728–2733 (2007).

    CAS  Article  Google Scholar 

Download references

Acknowledgements

This work was supported by the Biotechnology and Biological Sciences Research Council grant BB/K008153/1 (to K.S.W. and K.D.C.), Ministerio de Economía y Competitividad (MINECO) grant CTQ2014-55174-P (to C.R.) and Agència de Gestió d'Ajuts Universitaris i de Recerca (AGAUR) grant 2014SGR-987 (to C.R.). The authors thank E. Krissinel (CCP4) for valuable assistance in using CCP4SRS and the Barcelona Supercomputing Center (BSC) for providing computing support.

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Correspondence to Jon Agirre or Kevin D Cowtan.

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Agirre, J., Iglesias-Fernández, J., Rovira, C. et al. Privateer: software for the conformational validation of carbohydrate structures. Nat Struct Mol Biol 22, 833–834 (2015). https://doi.org/10.1038/nsmb.3115

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