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Protein dynamics from NMR

Abstract

This review surveys recent investigations of conformational fluctuations of proteins in solution using NMR techniques. Advances in experimental methods have provided more accurate means of characterizing fast and slow internal motions as well as overall diffusion. The information obtained from NMR dynamics experiments provides insights into specific structural changes or configurational energetics associated with function. A variety of applications illustrate that studies of protein dynamics provide insights into protein–protein interactions, target recognition, ligand binding, and enzyme function.

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Figure 1: Relationship between internal motion and model-free parameters.

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References

  1. Kay, L.E. Nature Struct. Biol. 5 Suppl, 513–517 (1998).

    Article  CAS  Google Scholar 

  2. Lipari, G. & Szabo, A. J. Am. Chem. Soc. 104, 4546–4559 (1982).

    Article  CAS  Google Scholar 

  3. Lipari, G. & Szabo, A. J. Am. Chem. Soc. 104, 4559–4570 (1982).

    Article  CAS  Google Scholar 

  4. Hiyama, Y., Niu, C.-H., Silverton, J.V., Bavoso, A. & Torchia, D.A. J. Am. Chem. Soc. 110, 2378–2383 (1988).

    Article  CAS  Google Scholar 

  5. Roberts, J.E., Harbison, G.S., Munowitz, M.G., Herzfeld, J. & Griffin, R.G. J. Am. Chem. Soc. 109, 4163–4169 (1987).

    Article  CAS  Google Scholar 

  6. Case, D.A. J. Biomol. NMR 15, 95–102 (1999).

    Article  CAS  Google Scholar 

  7. Tjandra, N., Szabo, A. & Bax, A. J. Am. Chem. Soc. 119, 6986–6991 (1996).

    Article  Google Scholar 

  8. Lee, A.L. & Wand, A.J. J. Biomol. NMR 13, 101–112 (1999).

    Article  CAS  Google Scholar 

  9. Kroenke, C.D., Rance, M. & Palmer, A.G. J. Am. Chem. Soc. 121, 10119–10125 (1999).

    Article  CAS  Google Scholar 

  10. Boyd, J. & Redfield, C. J. Am. Chem. Soc. 121, 7441–7442 (1999).

    Article  CAS  Google Scholar 

  11. Cornilescu, G. & Bax, A. J. Am. Chem. Soc. in the press (2000).

  12. Fushman, D., Tjandra, N. & Cowburn, D. J. Am. Chem. Soc. 120, 10947–10952 (1998).

    Article  CAS  Google Scholar 

  13. Fischer, M.W., Zeng, L., Majumdar, A. & Zuiderweg, E.R. Proc. Natl. Acad. Sci. USA 95, 8016–8019 (1998).

    Article  CAS  Google Scholar 

  14. Lienin, S.F., Bremi, T., Brutscher, B., Bruschweiler, R. & Ernst, R.R. J. Am. Chem. Soc. 120, 9870–9879 (1998).

    Article  CAS  Google Scholar 

  15. Mittermaier, A. & Kay, L.E. J. Am. Chem. Soc. 121, 10608–10613 (1999).

    Article  CAS  Google Scholar 

  16. Fushman, D., Tjandra, N. & Cowburn, D. J. Am. Chem. Soc. 121, 8577–8582 (1999).

    Article  CAS  Google Scholar 

  17. Schurr, J.M., Babcock, H.P. & Fujimoto, B.S. J. Magn. Reson. B 105, 211–224 (1994).

    Article  CAS  Google Scholar 

  18. Tjandra, N., Wingfield, P., Stahl, S. & Bax, A. J. Biomol. NMR 8, 273–284 (1996).

    Article  CAS  Google Scholar 

  19. Blackledge, M., Cordier, F., Dosset, P. & Marion, D. J. Am. Chem. Soc. 120, 4538–4539 (1998).

    Article  CAS  Google Scholar 

  20. Daragan, V.A. & Mayo, K.H. J. Phys. Chem. B 103, 6829–6834 (1999).

    Article  CAS  Google Scholar 

  21. Campos-Olivas, R., Newman, J.L. & Summers, M.F. J. Mol. Biol. 296, 633–649 (2000).

    Article  CAS  Google Scholar 

  22. Kroenke, C.D., Loria, J.P., Lee, L.K., Rance, M. & Palmer, A.G. J. Am. Chem. Soc. 120, 7905–7915 (1998).

    Article  CAS  Google Scholar 

  23. Ghose, R., Huang, K. & Prestegard, J.H. J. Magn. Reson. 135, 487–499 (1998).

    Article  CAS  Google Scholar 

  24. Engelke, J. & Ruterjans, H. J. Biomol. NMR 11, 165–183 (1998).

    Article  CAS  Google Scholar 

  25. Chiarparin, E., Pelupessy, P., Ghose, R. & Bodenhausen, G. J. Am. Chem. Soc. 121, 6876–6883 (1999).

    Article  CAS  Google Scholar 

  26. Yang, D.W., Mok, Y.K., Muhandiram, D.R., Forman-Kay, J.D. & Kay, L.E. J. Am. Chem. Soc. 121, 3555–3556 (1999).

    Article  CAS  Google Scholar 

  27. Pellecchia, M. et al. J. Am. Chem. Soc. 121, 9165–9170 (1999).

    Article  CAS  Google Scholar 

  28. McMahon, M.T. & Oldfield, E. J. Biomol. NMR 13, 133–137 (1999).

    Article  CAS  Google Scholar 

  29. Andrec, M., Montelione, G.T. & Levy, R.M. J. Magn. Reson. 139, 408–421 (1999).

    Article  CAS  Google Scholar 

  30. Ishima, R., Wingfield, P.T., Stahl, S.J., Kaufman, J.D. & Torchia, D.A. J. Am. Chem. Soc. 120, 10534–10542 (1998).

    Article  CAS  Google Scholar 

  31. Loria, J.P., Rance, M. & Palmer, A.G. J. Am. Chem. Soc. 121, 2331–2332 (1999).

    Article  CAS  Google Scholar 

  32. Loria, J.P., Rance, M. & Palmer, A.G. J. Biomol. NMR 15, 151–155 (1999).

    Article  CAS  Google Scholar 

  33. Mulder, F.A.A., van Tilborg, P.J.A., Kaptein, R. & Boelens, R. J Biomol. NMR 13, 275–288 (1999).

    Article  CAS  Google Scholar 

  34. Ishima, R. & Torchia, D.A. J. Biomol. NMR 14, 369–372 (1999).

    Article  CAS  Google Scholar 

  35. Millet, O., Loria, J.P., Kroenke, C.D., Pons, M. & Palmer, A.G. J. Am. Chem. Soc. 122, 2867–2877 (2000).

    Article  CAS  Google Scholar 

  36. LeMaster, D.M. & Kushlan, D.M. J. Am. Chem. Soc. 118, 9255–9264 (1996).

    Article  Google Scholar 

  37. Ishima, R., Louis, J.M. & Torchia, D.A. J. Am. Chem. Soc. 121, 11589–11590 (1999).

    Article  CAS  Google Scholar 

  38. McGuire, A.M., Matsuo, H. & Wagner, G. J. Biomol. NMR 12, 73–88 (1998).

    Article  CAS  Google Scholar 

  39. Feng, W.Q., Tejero, R., Zimmerman, D.E., Inouye, M. & Montelione, G.T. Biochemistry 37, 10881–10896 (1998).

    Article  CAS  Google Scholar 

  40. Kontaxis, G., Konrat, R., Krautler, B., Weiskirchen, R. & Bister, K. Biochemistry 37, 7127–7134 (1998).

    Article  CAS  Google Scholar 

  41. Wikstrom, A., Berglund, H., Hambraeus, C., van den Berg, S. & Hard, T. J. Mol. Biol. 289, 963–979 (1999).

    Article  CAS  Google Scholar 

  42. Huang, K., Ghose, R., Flanagan, J.M. & Prestegard, J.H. Biochemistry 38, 10567–10577 (1999).

    Article  CAS  Google Scholar 

  43. Duggan, B.M., Dyson, H.J. & Wright, P.E. Eur. J. Biochem. 265, 539–548 (1999).

    Article  CAS  Google Scholar 

  44. Crump, M.P. et al. Protein Sci. 8, 2041–2054 (1999).

    Article  CAS  Google Scholar 

  45. Cavanagh, J. & Akke, M. Nature Struc. Biol. 7, 11–13 (2000).

    Article  CAS  Google Scholar 

  46. Forman-Kay, J.D. Nature Struct. Biol. 6, 1086–1087 (1999).

    Article  CAS  Google Scholar 

  47. Akke, M., Bruschweiler, R. & Palmer, A.G. J. Am. Chem. Soc. 115, 9832–9833 (1993).

    Article  CAS  Google Scholar 

  48. Li, Z., Raychaudhuri, S. & Wand, A.J. Protein Sci. 12, 2647–2650 (1996).

    Article  Google Scholar 

  49. Yang, D. & Kay, L.E. J. Mol. Biol. 263, 369–382 (1996).

    Article  CAS  Google Scholar 

  50. Zidek, L., Novotny, M.V. & Stone, M.J. Nature Struct. Biol. 6, 1118–1121 (1999).

    Article  CAS  Google Scholar 

  51. Lee, A.L., Kinnear, S.A. & Wand, A.J. Nature Struct. Biol. 7, 72–77 (2000).

    Article  CAS  Google Scholar 

  52. Bracken, C., Carr, P.A., Cavanagh, J. & Palmer, A.G. J. Mol. Biol. 285, 2133–2146 (1999).

    Article  CAS  Google Scholar 

  53. Wrabl, J.O., Shortle, D. & Woolf, T.B. Proteins 38, 123–133 (2000).

    Article  CAS  Google Scholar 

  54. LeMaster, D.M. J. Am. Chem. Soc. 121, 1726–1742 (1999).

    Article  CAS  Google Scholar 

  55. Denisov, V.P., Venu, K., Peters, J., Horlein, H.D. & Halle, B. J. Phys. Chem. B 101, 9380–9389 (1997).

    Article  CAS  Google Scholar 

  56. Beeser, S.A., Oas, T.G. & Goldenberg, D.P. J. Mol. Biol. 284, 1581–1596 (1998).

    Article  CAS  Google Scholar 

  57. Arnesano, F., Banci, L., Bertini, I., Felli, I.C. & Koulougliotis, D. Eur. J. Biochem. 260, 347–354 (1999).

    Article  CAS  Google Scholar 

  58. Matsuo, H. et al. J. Am. Chem. Soc. 121, 9903–9904 (1999).

    Article  CAS  Google Scholar 

  59. Pfuhl, M., Chen, H.A., Kristensen, S.M. & Driscoll, P.C. J. Biomol. NMR 14, 307–320 (1999).

    Article  CAS  Google Scholar 

  60. Evenas, J., Forsen, S., Malmendal, A. & Akke, M. J. Mol. Biol. 289, 603–617 (1999).

    Article  CAS  Google Scholar 

  61. Malmendal, A., Evenas, J., Forsen, S. & Akke, M. J. Mol. Biol. 293, 883–899 (1999).

    Article  CAS  Google Scholar 

  62. Ishima, R., Freedberg, D.I., Wang, Y.X., Louis, J.M. & Torchia, D.A. Structure 7, 1047–1055 (1999).

    Article  CAS  Google Scholar 

  63. Katoh, E. et al. J. Am. Chem. Soc. 121, 2607–2608 (1999).

    Article  CAS  Google Scholar 

  64. Legge, G.B. et al. J. Mol. Biol. 295, 1251–1264 (2000).

    Article  CAS  Google Scholar 

  65. Hernandez, G., Jenney, F.E.J., Adams, M.W. & LeMaster, D.M. Proc. Natl. Acad. Sci. USA 97, 3166–3170 (2000).

    Article  CAS  Google Scholar 

  66. Bertini, I., Luchinat, C., Niikura, Y. & Presenti, C. Protein Science in the press (2000).

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Correspondence to Rieko Ishima or Dennis A. Torchia.

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Ishima, R., Torchia, D. Protein dynamics from NMR. Nat Struct Mol Biol 7, 740–743 (2000). https://doi.org/10.1038/78963

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