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Extending molecular systematics to the third dimension

Nature Structural Biology volume 3, pages 575–578 (1996)Cite this article

Groups from around the world involved in protein tertiary structure classification and structure comparision met in Paris to discuss and compare, for the first time, existing classification schemes.

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References

  1. Bernstein, F.C. et al. J. Mol. Biol. 112, 535–542 (1977).

    Article  CAS  Google Scholar 

  2. Rossmann, M.G., Liljas, A., Brändén, C.-I. & Banaszak, L.J. The Enzymes 11, 61–102 (1975).

    Article  Google Scholar 

  3. Levitt, M. & Chothia, C. Nature 261, 552–558 (1976).

    Article  CAS  Google Scholar 

  4. Chothia, C., Levitt, M. & Richardson, D. Proc. Nat. Acad. Sci. USA 74, 4130–4134 (1977).

    Article  CAS  Google Scholar 

  5. Richardson, J.S. Proc. Nat. Acad. Sci. USA 73, 2619–2623 (1976).

    Article  CAS  Google Scholar 

  6. Richardson, J.S. Nature 268, 495–500 (1977).

    Article  CAS  Google Scholar 

  7. Sternberg, M.J.E. & Thornton, J.M. J. Mol. Biol. 105, 367–382 (1976).

    Article  CAS  Google Scholar 

  8. Richardson, J.S. Advan. Protein Chem. 34, 167–339 (1981).

    Article  CAS  Google Scholar 

  9. Chothia, C. Ann. Rev. Biochem. 53, 537–572 (1984).

    Article  CAS  Google Scholar 

  10. Finkelstein, A.V. & Ptitsyn, O.B. Prog. Biophys. Mol. Biol. 50, 171–190 (1987).

    Article  CAS  Google Scholar 

  11. Murzin, A.G., Brenner, S.E., Hubbard, T. & Chothia, C. SCOP J. Mol. Biol. 247, 536–540 (1995).

    CAS  Google Scholar 

  12. url address: http://scop.mrc-lmb.cam.ac.uk/scop (mirror at the Brookhaven Protein Databank: http://www.pdb.bnl.gov/).

  13. McLachlan, A.D. J. Mol. Biol. 128, 49–79, (1979).

    Article  CAS  Google Scholar 

  14. Lasters, I., Wodak, S.J., Alard, P. & Van Cutsem, E. Proc. Natl. Acad. Sci. USA 85, 3338–3342, (1988).

    Article  CAS  Google Scholar 

  15. Lesk, A.M., Brändén, C.-I. & Chothia, C. Proteins Struct. Funct. and Genet. 5, 139–148 (1989).

    Article  CAS  Google Scholar 

  16. Orengo, C.A., Flores, T.P., Taylor, W.R. & Thornton, J.M. Prot. Engng. 6, 485–500 (1993).

    Article  CAS  Google Scholar 

  17. url address: http://www.ucl.ac.uk/bsm/cath.

  18. Taylor, W.R., Orengo, C.A. J. Mol. Biol. 208, 1–22 (1989).

    Article  CAS  Google Scholar 

  19. Holm, L. & Sander, S. Nucl. Ac. Res. 22, 3600–3609 (1994).

    CAS  Google Scholar 

  20. url address: http://www.embl-heidelberg.de/dali/fsss

  21. Lemer, C.M.-R., Rooman, M.J. & Wodak, S.J. Proteins: Struct., Funct., Genet. 23(3), 337–355 (1995).

    Article  CAS  Google Scholar 

  22. Orengo C. Classification of protein folds. Curr. Op. in Struct. Biol. 4, 29–440 (1994).

    Article  Google Scholar 

  23. url address: http://www.embl-heidelberg.de/dali/dali.html.

  24. Holm, L., Sander, S. Proceedings 3rd International Conference Intelligent System in Molecular Biology. (Eds. Rawlings C., Clack D., Altman R., Lengauer T. & Wodak, S.J.) 179–187 (1995).

  25. Holm, L. & Sander, S. J. Mol. Biol. 233, 123–138 (1993).

    Article  CAS  Google Scholar 

  26. Nussinov, R. & Wolfson, C. Proc. Nat. Acad. Sci., USA 88, 10495–10499 (1991).

    Article  CAS  Google Scholar 

  27. Diederich, K. Proteins 23, 187–195 (1995).

    Article  Google Scholar 

  28. Grindley, H.M., Artymiuk, P.J., Rice, D.W. & Willett, P. J. Mol. Biol. 229, 707–721 (1993).

    Article  CAS  Google Scholar 

  29. url address: http://www.ncbi.nih.gov/structure.

  30. Mizuguchi, K. & Go, N. Prot. Engng. 8(4), 353–362, 1995

    Article  CAS  Google Scholar 

  31. Gibrat, J.-F., Madej, T. & Bryant, S.H. Curr. Op. in Struct. Biol. in the press.

  32. Efimov, A.V. FEBS Letters 355, 213–219 (1994).

    Article  CAS  Google Scholar 

  33. Efimov, A.V. J. Mol. Biol. 245, 402–415 (1995).

    Article  CAS  Google Scholar 

  34. Wintjens, R.T., Rooman, M.J. & Wodak, S.J. Isr. J. Chem. 34(2), 257–269 (1994).

    Article  CAS  Google Scholar 

  35. Wintjens, R.T., Rooman, M.J. & Wodak, S.J. J. Mol. Biol. 255(1), 235–253 (1996).

    Article  CAS  Google Scholar 

  36. Bairoch, A. & Boeckmann, B. Nucleic Acids Res. 22, 3578–3580 (1994).

    Article  CAS  Google Scholar 

  37. url address: http://www.pbd.bnl.gov.

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Authors and Affiliations

  1. the Université Libre de Bruxelles, Untié de Conformation de Macromolécules Biologiques, CP 160/16, 50 av. ED. Roosevelt, B-1050, Bruxelles, Belgium

    Shoshana J. Wodak

  2. The European Bioinformatics, Institute of the European Molecular Biology, Laboratory, Hinxton Hall, Hiwcton, Cambridge, CB10 1RQ, UK

    Shoshana J. Wodak

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  1. Shoshana J. Wodak
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Wodak, S. Extending molecular systematics to the third dimension. Nat Struct Mol Biol 3, 575–578 (1996). https://doi.org/10.1038/nsb0796-575

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